BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0555100 Os05g0555100|AK069462
(449 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0555100 Similar to Protein phosphatase 2A B\'kappa sub... 805 0.0
Os03g0844500 Similar to Protein phosphatase 2A B\' regulato... 440 e-123
Os04g0485100 Similar to Protein phosphatase 2A B\' regulato... 436 e-122
Os07g0274800 Similar to Protein phosphatase 2A B\' regulato... 418 e-117
Os05g0178400 Similar to Protein phosphatase 2A B\'kappa sub... 412 e-115
Os08g0122000 Similar to Protein phosphatase 2A B\' regulato... 401 e-112
AK110299 318 4e-87
AK107284 288 4e-78
Os01g0178400 Similar to Protein phosphatase 2A B\'kappa sub... 114 2e-25
>Os05g0555100 Similar to Protein phosphatase 2A B\'kappa subunit
Length = 449
Score = 805 bits (2080), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/449 (89%), Positives = 400/449 (89%)
Query: 1 LEAPAAIAGPCTRRPPCATAVAAGGKCSSXXXXXXXXXXXXXXXXXXXXXXXDLDSGQCS 60
LEAPAAIAGPCTRRPPCATAVAAGGKCSS DLDSGQCS
Sbjct: 1 LEAPAAIAGPCTRRPPCATAVAAGGKCSSPPPLCAHPLRLAPPAAAAAAAAADLDSGQCS 60
Query: 61 NGAGNGNPIQRTSSCGSIPSGRSTSTIKRMSSAIFPSSVVAGIEPLVSFKDVPNSEKQNL 120
NGAGNGNPIQRTSSCGSIPSGRSTSTIKRMSSAIFPSSVVAGIEPLVSFKDVPNSEKQNL
Sbjct: 61 NGAGNGNPIQRTSSCGSIPSGRSTSTIKRMSSAIFPSSVVAGIEPLVSFKDVPNSEKQNL 120
Query: 121 FVSKLNLCCAVFDFSDPNKSSAEKDIKRQTLLDLIDYVDSSSSRFSEAVIAASSRMFAVN 180
FVSKLNLCCAVFDFSDPNKSSAEKDIKRQTLLDLIDYVDSSSSRFSEAVIAASSRMFAVN
Sbjct: 121 FVSKLNLCCAVFDFSDPNKSSAEKDIKRQTLLDLIDYVDSSSSRFSEAVIAASSRMFAVN 180
Query: 181 LFRVFPPNYRXXXXXXXXXXXXXPMFEPAWCHLQLVYELLLKFIGSSSLDAKVGKKYFDH 240
LFRVFPPNYR PMFEPAWCHLQLVYELLLKFIGSSSLDAKVGKKYFDH
Sbjct: 181 LFRVFPPNYRSSSSGGGEGEEEEPMFEPAWCHLQLVYELLLKFIGSSSLDAKVGKKYFDH 240
Query: 241 SFIVKLLNLLDSEDPRERDCLKTILHRIYGKFMVHRPFIRKAVSNIFYHFVFETDRHNGI 300
SFIVKLLNLLDSEDPRERDCLKTILHRIYGKFMVHRPFIRKAVSNIFYHFVFETDRHNGI
Sbjct: 241 SFIVKLLNLLDSEDPRERDCLKTILHRIYGKFMVHRPFIRKAVSNIFYHFVFETDRHNGI 300
Query: 301 AELLEVFGSVISGFALPLKEEHKIFLWRVLVPLHKPKSVGVYLQQLTYCVTQFIEKDPKL 360
AELLEVFGSVISGFALPLKEEHKIFLWRVLVPLHKPKSVGVYLQQLTYCVTQFIEKDPKL
Sbjct: 301 AELLEVFGSVISGFALPLKEEHKIFLWRVLVPLHKPKSVGVYLQQLTYCVTQFIEKDPKL 360
Query: 361 ASSVIIGLLRYWPITNSQKEVMFXXXXXXXXXXXXXAEFQKCMVPLFRRIAQCIKSSHFQ 420
ASSVIIGLLRYWPITNSQKEVMF AEFQKCMVPLFRRIAQCIKSSHFQ
Sbjct: 361 ASSVIIGLLRYWPITNSQKEVMFLSEIEEILETISTAEFQKCMVPLFRRIAQCIKSSHFQ 420
Query: 421 VTCPNKYNLSMFIFCFCHYAFPSPKKNNI 449
VTCPNKYNLSMFIFCFCHYAFPSPKKNNI
Sbjct: 421 VTCPNKYNLSMFIFCFCHYAFPSPKKNNI 449
>Os03g0844500 Similar to Protein phosphatase 2A B\' regulatory subunit
Length = 517
Score = 440 bits (1132), Expect = e-123, Method: Compositional matrix adjust.
Identities = 203/331 (61%), Positives = 254/331 (76%)
Query: 91 SSAIFPSSVVAGIEPLVSFKDVPNSEKQNLFVSKLNLCCAVFDFSDPNKSSAEKDIKRQT 150
+S + +SV +E L SFKDVPN+EK NLFV KLNLCCA FDF+DP KS EK++KRQT
Sbjct: 69 NSRVNGNSVQPTVELLPSFKDVPNTEKNNLFVKKLNLCCATFDFTDPTKSVKEKEVKRQT 128
Query: 151 LLDLIDYVDSSSSRFSEAVIAASSRMFAVNLFRVFPPNYRXXXXXXXXXXXXXPMFEPAW 210
LL+L+DY+ S++ +F E ++ +RM +VNLFR R P+ +PAW
Sbjct: 129 LLELVDYIASANGKFPEIIMQEITRMVSVNLFRTLTTPPRENKIEAFDVDDEEPVMDPAW 188
Query: 211 CHLQLVYELLLKFIGSSSLDAKVGKKYFDHSFIVKLLNLLDSEDPRERDCLKTILHRIYG 270
HLQ+VYEL L+FI S DAK+ K+Y DHSF+++LL+L DSEDPRER+ LKTILHR+YG
Sbjct: 189 SHLQIVYELFLRFIQSPETDAKLAKRYIDHSFVLRLLDLFDSEDPREREYLKTILHRVYG 248
Query: 271 KFMVHRPFIRKAVSNIFYHFVFETDRHNGIAELLEVFGSVISGFALPLKEEHKIFLWRVL 330
KFMVHRPFIRKA++NIFY F++ET++HNGIAELLE+ GS+I+GFALPLKEEHK+FL R L
Sbjct: 249 KFMVHRPFIRKAINNIFYQFIYETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRAL 308
Query: 331 VPLHKPKSVGVYLQQLTYCVTQFIEKDPKLASSVIIGLLRYWPITNSQKEVMFXXXXXXX 390
+PLHKPK +G+Y QQL+YC+TQF+EKD KLA +VI GLL+YWPITNS KEV+F
Sbjct: 309 IPLHKPKCIGMYHQQLSYCITQFVEKDCKLADTVIRGLLKYWPITNSSKEVLFLGELEEI 368
Query: 391 XXXXXXAEFQKCMVPLFRRIAQCIKSSHFQV 421
AEFQKCMVPLFR+IA C+ SSHFQV
Sbjct: 369 LEATQPAEFQKCMVPLFRQIAHCLNSSHFQV 399
>Os04g0485100 Similar to Protein phosphatase 2A B\' regulatory subunit
Length = 509
Score = 436 bits (1122), Expect = e-122, Method: Compositional matrix adjust.
Identities = 213/378 (56%), Positives = 273/378 (72%), Gaps = 11/378 (2%)
Query: 56 SGQCSNGAG-NGN-PIQRTSSCGSIPSG--RSTSTIKRMSSAIFPSSVVAGI------EP 105
+G + AG NGN P S S+ G RS + + + + P+ ++ G EP
Sbjct: 16 AGDSRDAAGPNGNEPSNSYSVARSVEQGNKRSGNGDYVVPAGLTPNPMMNGTVVYHSNEP 75
Query: 106 LVSFKDVPNSEKQNLFVSKLNLCCAVFDFSDPNKSSAEKDIKRQTLLDLIDYVDSSSSRF 165
L +FKDVP SEKQNLFV K+NLCCAV+DF+DP K+ EK+ KRQTL++L+DYV S++ +F
Sbjct: 76 LPAFKDVPASEKQNLFVKKVNLCCAVYDFADPTKNLKEKETKRQTLMELVDYVTSANGKF 135
Query: 166 SEAVIAASSRMFAVNLFRVFPPNYRXXXXXX-XXXXXXXPMFEPAWCHLQLVYELLLKFI 224
SE V++ ++M ++NLFR P R P+ +PAW HLQ+VYE+ L+F+
Sbjct: 136 SEVVMSEITKMVSINLFRSSSPTPRENKAIEGVDLEEEEPLMDPAWSHLQIVYEVFLRFV 195
Query: 225 GSSSLDAKVGKKYFDHSFIVKLLNLLDSEDPRERDCLKTILHRIYGKFMVHRPFIRKAVS 284
S DAK+ K+Y DHSFI++LL+L DSEDPRERD LKTILHRIYGKFMVHRPFIRKA++
Sbjct: 196 ASQETDAKLAKRYIDHSFILRLLDLFDSEDPRERDYLKTILHRIYGKFMVHRPFIRKAIN 255
Query: 285 NIFYHFVFETDRHNGIAELLEVFGSVISGFALPLKEEHKIFLWRVLVPLHKPKSVGVYLQ 344
NIFY F+FET++HNG+AELLE+ GS+I+GFALPLKEEHK+FL R L+PLHKPK V +Y Q
Sbjct: 256 NIFYRFIFETEKHNGVAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVSMYHQ 315
Query: 345 QLTYCVTQFIEKDPKLASSVIIGLLRYWPITNSQKEVMFXXXXXXXXXXXXXAEFQKCMV 404
QL+YC+TQF+EKD KLA +VI GLL+YWP+TNS KEVMF AEFQ+CMV
Sbjct: 316 QLSYCITQFVEKDCKLADTVIRGLLKYWPVTNSSKEVMFLGELEEVLEATQPAEFQRCMV 375
Query: 405 PLFRRIAQCIKSSHFQVT 422
PLFR+IA + SSHFQV
Sbjct: 376 PLFRQIACSMNSSHFQVA 393
>Os07g0274800 Similar to Protein phosphatase 2A B\' regulatory subunit
Length = 517
Score = 418 bits (1074), Expect = e-117, Method: Compositional matrix adjust.
Identities = 203/368 (55%), Positives = 261/368 (70%), Gaps = 7/368 (1%)
Query: 56 SGQCSNGAGNGNPIQRTSSCGSIPSGRSTSTIKRMSSAIFPSSVVAGIEPLVSFKDVPNS 115
+ + ++ G+ PI ++ R + R + ++ SS +PL SFKDVPNS
Sbjct: 37 ADRATSNLGSQPPIISSTGLSYGSGNRVENPNTRTNGNLYSSS----FQPLPSFKDVPNS 92
Query: 116 EKQNLFVSKLNLCCAVFDFSDPNKSSAEKDIKRQTLLDLIDYVDSSSSRFSEAVIAASSR 175
EKQNL + KL LCC VFDF+DP K+ EK++K QTLL+++DYV S++ +F E V+ +R
Sbjct: 93 EKQNLLIRKLKLCCIVFDFTDPTKNIQEKEMKSQTLLEIVDYVVSATVKFPEIVMLEITR 152
Query: 176 MFAVNLFRVF--PPNYRXXXXXXXXXXXXXPMFEPAWCHLQLVYELLLKFIGSSSLDAKV 233
M + NLFR PP + M +PAW HLQ+VYELLLKFI S DAK+
Sbjct: 153 MISANLFRTLISPPREKKVLQAFDLEEDEAVM-DPAWSHLQIVYELLLKFIQSPETDAKL 211
Query: 234 GKKYFDHSFIVKLLNLLDSEDPRERDCLKTILHRIYGKFMVHRPFIRKAVSNIFYHFVFE 293
K+Y DHSFI++LL++ DSEDPRER+ LK LHRIYGKFMV+RPFIRKA++NIFY F++E
Sbjct: 212 AKRYIDHSFILRLLDIFDSEDPREREYLKMTLHRIYGKFMVYRPFIRKAINNIFYQFIYE 271
Query: 294 TDRHNGIAELLEVFGSVISGFALPLKEEHKIFLWRVLVPLHKPKSVGVYLQQLTYCVTQF 353
T++HNGIAELLE+ GS+I+GFALPLKEEHK+FL R L+PLHKPK + +Y QQL+Y +TQF
Sbjct: 272 TEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRTLIPLHKPKCIALYHQQLSYSITQF 331
Query: 354 IEKDPKLASSVIIGLLRYWPITNSQKEVMFXXXXXXXXXXXXXAEFQKCMVPLFRRIAQC 413
+EKD KLA +VI GL++YWPITNS KEVMF AEFQKCMVPLFR+IA C
Sbjct: 332 VEKDCKLADTVIRGLIKYWPITNSTKEVMFLGELEEILDATQPAEFQKCMVPLFRQIACC 391
Query: 414 IKSSHFQV 421
+ SSHFQV
Sbjct: 392 LNSSHFQV 399
>Os05g0178400 Similar to Protein phosphatase 2A B\'kappa subunit
Length = 491
Score = 412 bits (1060), Expect = e-115, Method: Compositional matrix adjust.
Identities = 195/314 (62%), Positives = 238/314 (75%), Gaps = 8/314 (2%)
Query: 117 KQNLFVSKLNLCCAVFDFS--------DPNKSSAEKDIKRQTLLDLIDYVDSSSSRFSEA 168
++++F+ KLN+CC VFDFS + + S E++ KRQ L+ L+D V ++ +EA
Sbjct: 58 REDVFLRKLNVCCVVFDFSSAAAAAAAERGRDSPERERKRQVLVSLVDCVGAAEEPLTEA 117
Query: 169 VIAASSRMFAVNLFRVFPPNYRXXXXXXXXXXXXXPMFEPAWCHLQLVYELLLKFIGSSS 228
+I+ RMFA+NLFRVFPP R P F+P+W HLQ VYELLL+F+ S
Sbjct: 118 MISGCVRMFAINLFRVFPPKVRSGAAGAAEADEDEPFFDPSWYHLQAVYELLLRFVMSPV 177
Query: 229 LDAKVGKKYFDHSFIVKLLNLLDSEDPRERDCLKTILHRIYGKFMVHRPFIRKAVSNIFY 288
+D K+ +KY D+SF+ +LL+L DS+DPRER+CLKT+LHRIYGKFM +RPFIRKAVSNIFY
Sbjct: 178 VDVKIARKYMDNSFVSRLLDLFDSDDPRERECLKTVLHRIYGKFMGNRPFIRKAVSNIFY 237
Query: 289 HFVFETDRHNGIAELLEVFGSVISGFALPLKEEHKIFLWRVLVPLHKPKSVGVYLQQLTY 348
FVFETDRHNGIAELLEVFGSVISGFA PLKEEHK+FLW+ LVPLHKPK+VGVYL QLTY
Sbjct: 238 RFVFETDRHNGIAELLEVFGSVISGFAKPLKEEHKLFLWKALVPLHKPKTVGVYLPQLTY 297
Query: 349 CVTQFIEKDPKLASSVIIGLLRYWPITNSQKEVMFXXXXXXXXXXXXXAEFQKCMVPLFR 408
C+ QFIEK+PKLA +VI GLL+YWP+TNSQKE+MF AEFQKCMVPLFR
Sbjct: 298 CIIQFIEKEPKLAGTVIRGLLKYWPVTNSQKEMMFLGELEEVLELTEMAEFQKCMVPLFR 357
Query: 409 RIAQCIKSSHFQVT 422
RIA C+ SSHFQV
Sbjct: 358 RIAHCLNSSHFQVA 371
>Os08g0122000 Similar to Protein phosphatase 2A B\' regulatory subunit
Length = 516
Score = 401 bits (1030), Expect = e-112, Method: Compositional matrix adjust.
Identities = 192/319 (60%), Positives = 236/319 (73%), Gaps = 1/319 (0%)
Query: 104 EPLVSFKDVPNSEKQNLFVSKLNLCCAVFDFSDPNKSSAEKDIKRQTLLDLIDYVDSSSS 163
E L S +D P EK +LF+ K+ +C VFDF+DP K EK+IKRQTLL+L+DYV S++
Sbjct: 85 EALPSLRDAPAPEKPSLFLRKVVMCYVVFDFTDPTKDVKEKEIKRQTLLELVDYVTSATG 144
Query: 164 RFSEAVIAASSRMFAVNLFRVFPPNYRXXXXXXX-XXXXXXPMFEPAWCHLQLVYELLLK 222
+F E + +M + NLFRV P R P+ +PAW HLQ+VYEL L+
Sbjct: 145 KFPEPAVQEVIKMVSTNLFRVPNPAPRENKPLESFDMEEEEPVMDPAWPHLQIVYELFLR 204
Query: 223 FIGSSSLDAKVGKKYFDHSFIVKLLNLLDSEDPRERDCLKTILHRIYGKFMVHRPFIRKA 282
F+ S DAK+ K+Y DH FI+KLL+L DSEDPRER+ LKTILHRIYGKFMVHRPFIRKA
Sbjct: 205 FVQSPETDAKLAKRYVDHGFIIKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKA 264
Query: 283 VSNIFYHFVFETDRHNGIAELLEVFGSVISGFALPLKEEHKIFLWRVLVPLHKPKSVGVY 342
++NIFY F+FET++HNGIAELLE+ GS+I+GFALPLKEEHK+FL R L+PLHKPK V +Y
Sbjct: 265 INNIFYRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVSMY 324
Query: 343 LQQLTYCVTQFIEKDPKLASSVIIGLLRYWPITNSQKEVMFXXXXXXXXXXXXXAEFQKC 402
QQL+YCVTQF+EKD KLA +VI GLL+YWPITNS KEVMF AEFQ+C
Sbjct: 325 HQQLSYCVTQFVEKDCKLADTVIRGLLKYWPITNSAKEVMFLGELEEVLEATQPAEFQRC 384
Query: 403 MVPLFRRIAQCIKSSHFQV 421
MV LF +IA+C+ SSHFQV
Sbjct: 385 MVSLFCQIARCLNSSHFQV 403
>AK110299
Length = 734
Score = 318 bits (816), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 157/334 (47%), Positives = 212/334 (63%), Gaps = 2/334 (0%)
Query: 103 IEPLVSFKDVPNSEKQNLFVSKLNLCCAVFDFSDPNKSSAEKDIKRQTLLDLIDYVDSSS 162
+E L F +VP ++++ LF+ K++ C +FDF+D + K+IKR L +L+DYV ++
Sbjct: 194 LEKLPGFHEVPPNKREELFMQKIDQCNIIFDFNDASGDMKSKEIKRLALHELLDYVANNR 253
Query: 163 SRFSEAVIAASSRMFAVNLFRVFPPNYRXXXXXXXXXXXXXPMFEPAWCHLQLVYELLLK 222
+E + MFA NLFR PP P+ E AW ++Q+VYE L+
Sbjct: 254 QVITEKMYPRVVEMFAKNLFRPIPPPMNPQGEAFDPEEDE-PVLEVAWPYIQVVYEFFLR 312
Query: 223 FIGSSSLDAKVGKKYFDHSFIVKLLNLLDSEDPRERDCLKTILHRIYGKFMVHRPFIRKA 282
FI S + + K Y DHSF++ LL L DSEDPRERD LKT LHRIYGKF+ R +IR++
Sbjct: 313 FIESQDFNTNIAKAYIDHSFVLNLLELFDSEDPRERDFLKTTLHRIYGKFLNLRSYIRRS 372
Query: 283 VSNIFYHFVFETDRHNGIAELLEVFGSVISGFALPLKEEHKIFLWRVLVPLHKPKSVGVY 342
++N+F+ F++ET+R NGIAELLE+ GS+I+GFALPLKEEHK+FL RVL+PLHK KS+ +Y
Sbjct: 373 INNVFFQFIYETERFNGIAELLEILGSIINGFALPLKEEHKLFLTRVLIPLHKVKSLSMY 432
Query: 343 LQQLTYCVTQFIEKDPKLASSVII-GLLRYWPITNSQKEVMFXXXXXXXXXXXXXAEFQK 401
QL YC+ QF+EKD L V++ GLLRYWP NS KEVMF AEF K
Sbjct: 433 HPQLAYCIVQFLEKDAALTEEVVVLGLLRYWPKVNSTKEVMFLNEVEDIFEVMDPAEFAK 492
Query: 402 CMVPLFRRIAQCIKSSHFQVTCPNKYNLSMFIFC 435
PLF ++A+ + S HFQV Y + FC
Sbjct: 493 VQEPLFNQLAKSVASPHFQVAERALYFWNNEYFC 526
>AK107284
Length = 485
Score = 288 bits (738), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 135/247 (54%), Positives = 170/247 (68%), Gaps = 1/247 (0%)
Query: 176 MFAVNLFRVFPPNYRXXXXXXXXXXXXXPMFEPAWCHLQLVYELLLKFIGSSSLDAKVGK 235
MF+ NLFR PP P+ E AW HLQ+VYE LL+F+ S + + K
Sbjct: 1 MFSANLFRSIPPQVNPVGEAFDPEEDE-PVLELAWPHLQIVYEFLLRFVESPDFNTNIAK 59
Query: 236 KYFDHSFIVKLLNLLDSEDPRERDCLKTILHRIYGKFMVHRPFIRKAVSNIFYHFVFETD 295
K+ DH F+++LL L DSEDPRERD LKT LHRIYGKF+ R FIR++++N+F+ F++ET+
Sbjct: 60 KFIDHHFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLNLRAFIRRSINNVFFQFIYETE 119
Query: 296 RHNGIAELLEVFGSVISGFALPLKEEHKIFLWRVLVPLHKPKSVGVYLQQLTYCVTQFIE 355
RHNGIAELLE+ GS+I+GFALPLKEEHK FL RVL+PLHK KS+ +Y QL YCV QF+E
Sbjct: 120 RHNGIAELLEILGSIINGFALPLKEEHKTFLTRVLIPLHKVKSLALYHPQLAYCVVQFLE 179
Query: 356 KDPKLASSVIIGLLRYWPITNSQKEVMFXXXXXXXXXXXXXAEFQKCMVPLFRRIAQCIK 415
KD L V++GLLRYWP NS KEVMF +EF K VPLF+++ +CI
Sbjct: 180 KDSALTEEVLLGLLRYWPKVNSPKEVMFLNEVEEILDVIEPSEFVKIEVPLFQQLQRCIN 239
Query: 416 SSHFQVT 422
S HFQV
Sbjct: 240 SQHFQVA 246
>Os01g0178400 Similar to Protein phosphatase 2A B\'kappa subunit
Length = 205
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 52/77 (67%), Positives = 59/77 (76%)
Query: 345 QLTYCVTQFIEKDPKLASSVIIGLLRYWPITNSQKEVMFXXXXXXXXXXXXXAEFQKCMV 404
QLTYC+TQFIEK+ KLA +VI GLL+YWP+TNSQKE+MF AEFQKCMV
Sbjct: 2 QLTYCITQFIEKETKLAGTVIRGLLKYWPVTNSQKEMMFLGELEEVLELTDMAEFQKCMV 61
Query: 405 PLFRRIAQCIKSSHFQV 421
PLFRRIA C+ SSHFQV
Sbjct: 62 PLFRRIASCLNSSHFQV 78
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.137 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,437,757
Number of extensions: 481709
Number of successful extensions: 1676
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 1667
Number of HSP's successfully gapped: 9
Length of query: 449
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 345
Effective length of database: 11,605,545
Effective search space: 4003913025
Effective search space used: 4003913025
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 158 (65.5 bits)