Os05g0178400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Protein phosphatase 2A B'kappa subunit.
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Os05g0178400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Protein phosphatase 2A B'kappa subunit.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 14.31 | 0.178 | 12 | 0.247 | 0.436 | 0.428 | -0.272 | -1.24 | 0.0925 | 19.9 | 21.64 | 1358 | -- | -- |
| 15.38 | 0.183 | 12 | 0.588 | 0.394 | 0.422 | -0.31 | -- | 0.186 | 20.2 | 17.78 | 1990 | -- | -- |
| 14.5 | 0.177 | 12 | 0.246 | 0.431 | 0.446 | -- | -1.34 | 0.0902 | 19.9 | 21.96 | 1283 | -- | -- |
| 15.66 | 0.184 | 12 | 0.602 | 0.398 | 0.416 | -- | -- | 0.188 | 20.3 | 18 | 1907 | -- | -- |
| 17.57 | 0.195 | 12 | 0.17 | -- | 0.762 | -- | -2 | 0.049 | -- | 21.93 | 673 | -- | -- |
| 19.38 | 0.206 | 11.9 | 0.745 | 0.437 | -- | -0.274 | -- | 0.277 | 20.3 | -- | -- | -- | -- |
| 19.61 | 0.207 | 11.9 | 0.753 | 0.437 | -- | -- | -- | 0.276 | 20.3 | -- | -- | -- | -- |
| 19.73 | 0.207 | 12 | 0.571 | -- | 0.674 | -- | -- | 0.153 | -- | 18.8 | 653 | -- | -- |
| 18.54 | 0.201 | 12 | -- | 0.431 | 0.658 | -- | -- | 0.0108 | 20.2 | 8.285 | 24778 | -- | -- |
| 30.19 | 0.257 | 11.9 | 0.75 | -- | -- | -- | -- | 0.272 | -- | -- | -- | -- | -- |
| 34.56 | 0.275 | 12 | -- | 0.434 | -- | -- | -- | 0.193 | 20.4 | -- | -- | -- | -- |
| 27.42 | 0.244 | 12 | -- | -- | 0.977 | -- | -- | 0.0639 | -- | 15.46 | 675 | -- | -- |
| 45.05 | 0.313 | 12 | -- | -- | -- | -- | -- | 0.188 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 13.34 | radiation | 40 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 2 | 13.36 | radiation | 40 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 5 | 13.41 | radiation | 30 | 43200 | > th | dose dependent | rect. | 9 | 2 |
| 6 | 13.43 | radiation | 20 | 43200 | < th | dose independent | rect. | 6 | 4 |
| 20 | 13.44 | radiation | 40 | 43200 | > th | dose independent | rect. | 7 | 4 |
| 49 | 13.44 | radiation | 10 | 43200 | > th | dose dependent | rect. | 6 | 2 |
| 65 | 13.46 | radiation | 20 | 43200 | > th | dose independent | rect. | 6 | 3 |
| 82 | 13.47 | radiation | 20 | 43200 | < th | dose independent | sin | 9 | NA |
| 273 | 13.52 | radiation | 30 | 43200 | < th | dose dependent | rect. | 6 | 2 |
| 321 | 13.53 | radiation | 10 | 43200 | > th | dose dependent | sin | 10 | NA |
| 428 | 13.55 | temperature | 20 | 270 | > th | dose dependent | rect. | 14 | 19 |
| 481 | 13.56 | temperature | 20 | 270 | > th | dose dependent | rect. | 13 | 21 |
| 483 | 13.57 | radiation | 40 | 43200 | > th | dose independent | sin | 10 | NA |
| 734 | 13.61 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 968 | 13.66 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 1 |