Os08g0122000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Protein phosphatase 2A B' regulatory subunit.
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Os08g0122000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Protein phosphatase 2A B' regulatory subunit.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.64 | 0.224 | 12.4 | 0.682 | 0.458 | 0.588 | -0.359 | -0.3 | 0.349 | 23.9 | 24.36 | 36 | -- | -- |
| 22.79 | 0.222 | 12.4 | 0.687 | 0.447 | 0.603 | -0.603 | -- | 0.35 | 23.8 | 26.27 | 37 | -- | -- |
| 22.77 | 0.222 | 12.4 | 0.696 | 0.444 | 0.602 | -- | -0.582 | 0.356 | 23.8 | 23.47 | 37 | -- | -- |
| 24.46 | 0.23 | 12.4 | 0.703 | 0.48 | 0.574 | -- | -- | 0.35 | 23.8 | 25.16 | 37 | -- | -- |
| 25.09 | 0.233 | 12.4 | 0.702 | -- | 0.901 | -- | -0.589 | 0.37 | -- | 17.46 | 46 | -- | -- |
| 28.61 | 0.251 | 12.4 | 0.66 | 1.02 | -- | -0.582 | -- | 0.309 | 0.0604 | -- | -- | -- | -- |
| 30.08 | 0.257 | 12.4 | 0.683 | 1.02 | -- | -- | -- | 0.312 | 0.0452 | -- | -- | -- | -- |
| 27.12 | 0.243 | 12.4 | 0.706 | -- | 0.891 | -- | -- | 0.38 | -- | 17.17 | 42 | -- | -- |
| 37.46 | 0.285 | 12.4 | -- | 0.537 | 0.528 | -- | -- | 0.27 | 23.9 | 25.29 | 37 | -- | -- |
| 95.71 | 0.457 | 12.4 | 0.715 | -- | -- | -- | -- | 0.326 | -- | -- | -- | -- | -- |
| 42.39 | 0.305 | 12.4 | -- | 1.03 | -- | -- | -- | 0.236 | 0.0825 | -- | -- | -- | -- |
| 39.5 | 0.293 | 12.4 | -- | -- | 0.856 | -- | -- | 0.3 | -- | 11.2 | 26 | -- | -- |
| 109.21 | 0.488 | 12.4 | -- | -- | -- | -- | -- | 0.247 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.73 | radiation | 20 | 10 | < th | dose dependent | rect. | 16 | 23 |
| 3 | 22.79 | radiation | 20 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 4 | 22.80 | radiation | 20 | 30 | < th | dose dependent | no | NA | NA |
| 6 | 22.80 | radiation | 20 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 16 | 22.96 | radiation | 20 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 19 | 23.02 | radiation | 20 | 30 | < th | dose dependent | sin | 23 | NA |
| 30 | 23.11 | radiation | 30 | 30 | < th | dose dependent | rect. | 3 | 17 |
| 37 | 23.22 | radiation | 20 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 52 | 23.34 | radiation | 20 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 82 | 23.58 | radiation | 1 | 30 | > th | dose independent | sin | 23 | NA |
| 97 | 23.67 | radiation | 1 | 30 | < th | dose independent | sin | 23 | NA |
| 99 | 23.68 | radiation | 20 | 30 | < th | dose independent | rect. | 3 | 17 |
| 100 | 23.68 | radiation | 10 | 10 | > th | dose independent | rect. | 9 | 23 |
| 104 | 23.69 | radiation | 20 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 119 | 23.76 | radiation | 20 | 30 | < th | dose dependent | rect. | 7 | 13 |
| 141 | 23.86 | radiation | 1 | 90 | < th | dose independent | rect. | 5 | 14 |
| 154 | 23.91 | radiation | 1 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 172 | 23.95 | radiation | 10 | 30 | > th | dose independent | rect. | 17 | 23 |
| 176 | 23.95 | radiation | 20 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 208 | 24.04 | radiation | 10 | 30 | > th | dose independent | rect. | 6 | 10 |
| 239 | 24.07 | humidity | 70 | 10 | > th | dose independent | rect. | 3 | 17 |
| 241 | 24.07 | radiation | 20 | 10 | < th | dose dependent | rect. | 16 | 18 |
| 262 | 24.11 | wind | 1 | 90 | > th | dose independent | rect. | 3 | 17 |
| 269 | 24.15 | radiation | 30 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 270 | 24.16 | radiation | 30 | 30 | < th | dose dependent | rect. | 3 | 12 |
| 280 | 24.18 | radiation | 10 | 10 | > th | dose independent | rect. | 11 | 23 |
| 363 | 24.29 | radiation | 1 | 30 | > th | dose dependent | rect. | 17 | 23 |
| 364 | 24.30 | radiation | 10 | 10 | > th | dose independent | no | NA | NA |
| 446 | 24.30 | radiation | 1 | 30 | > th | dose dependent | rect. | 9 | 23 |
| 472 | 24.33 | radiation | 1 | 30 | > th | dose dependent | no | NA | NA |
| 476 | 24.33 | radiation | 1 | 30 | > th | dose dependent | rect. | 5 | 14 |
| 686 | 24.38 | humidity | 50 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 690 | 24.38 | radiation | 1 | 30 | > th | dose dependent | rect. | 11 | 23 |
| 702 | 24.41 | radiation | 1 | 30 | > th | dose dependent | rect. | 5 | 11 |
| 751 | 24.44 | radiation | 20 | 30 | < th | dose independent | rect. | 16 | 23 |
| 805 | 24.48 | radiation | 10 | 10 | < th | dose independent | rect. | 7 | 13 |
| 851 | 24.54 | radiation | 20 | 30 | < th | dose independent | rect. | 10 | 10 |
| 869 | 24.56 | radiation | 10 | 43200 | < th | dose dependent | rect. | 21 | 7 |
| 898 | 24.58 | radiation | 20 | 30 | < th | dose independent | rect. | 3 | 12 |