Os07g0274800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Protein phosphatase 2A B' regulatory subunit.
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Os07g0274800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Protein phosphatase 2A B' regulatory subunit.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.2 | 0.302 | 10.5 | 0.527 | 0.264 | 1.31 | -0.508 | 0.255 | 0.126 | 5.71 | 9.983 | 619 | -- | -- |
| 41.25 | 0.299 | 10.5 | 0.487 | 0.274 | 1.32 | -0.539 | -- | 0.113 | 5.65 | 8.867 | 604 | -- | -- |
| 41.68 | 0.301 | 10.5 | 0.572 | 0.285 | 1.32 | -- | 0.537 | 0.14 | 5.21 | 10.2 | 584 | -- | -- |
| 41.9 | 0.301 | 10.5 | 0.481 | 0.291 | 1.34 | -- | -- | 0.115 | 5.14 | 8.991 | 572 | -- | -- |
| 43.61 | 0.308 | 10.5 | 0.578 | -- | 1.15 | -- | 0.438 | 0.158 | -- | 5.514 | 825 | -- | -- |
| 62.35 | 0.37 | 10.5 | 0.818 | 0.177 | -- | 0.501 | -- | 0.319 | 21.4 | -- | -- | -- | -- |
| 62.96 | 0.372 | 10.5 | 0.797 | 0.184 | -- | -- | -- | 0.316 | 23 | -- | -- | -- | -- |
| 43.77 | 0.308 | 10.5 | 0.492 | -- | 1.16 | -- | -- | 0.136 | -- | 10.37 | 828 | -- | -- |
| 47.31 | 0.32 | 10.5 | -- | 0.336 | 1.56 | -- | -- | 0.0299 | 5.54 | 8.459 | 588 | -- | -- |
| 65.06 | 0.377 | 10.5 | 0.801 | -- | -- | -- | -- | 0.318 | -- | -- | -- | -- | -- |
| 79.69 | 0.418 | 10.5 | -- | 0.191 | -- | -- | -- | 0.228 | 23.3 | -- | -- | -- | -- |
| 48.02 | 0.323 | 10.5 | -- | -- | 1.21 | -- | -- | 0.0354 | -- | 10.74 | 2276 | -- | -- |
| 81.98 | 0.423 | 10.5 | -- | -- | -- | -- | -- | 0.229 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.57 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 2 | 40.73 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 8 | 41.16 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 16 | 41.40 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 23 |
| 19 | 41.41 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 21 | 41.44 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 25 | 41.47 | temperature | 15 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 48 | 41.76 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 19 |
| 54 | 41.83 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 19 |
| 99 | 42.11 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 107 | 42.16 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 16 |
| 138 | 42.27 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 146 | 42.29 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 165 | 42.34 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 8 |
| 172 | 42.35 | temperature | 10 | 1440 | > th | dose dependent | sin | 10 | NA |
| 188 | 42.37 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 8 |
| 245 | 42.45 | temperature | 30 | 1440 | < th | dose dependent | sin | 11 | NA |
| 270 | 42.48 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 6 |
| 299 | 42.51 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 17 |
| 478 | 42.76 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 503 | 42.80 | temperature | 10 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 532 | 42.83 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 1 |
| 726 | 42.99 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 990 | 43.19 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 1 |