Os01g0178400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Protein phosphatase 2A B'kappa subunit.
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Os01g0178400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Protein phosphatase 2A B'kappa subunit.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 215.46 | 0.69 | 7.8 | -1.37 | 3.16 | 1.59 | -0.615 | 2.32 | 0.144 | 4.34 | -0.004371 | 5284 | -- | -- |
| 219.35 | 0.69 | 7.84 | -1.34 | 3.16 | 1.93 | -0.616 | -- | 0.158 | 4.35 | 0.2346 | 5227 | -- | -- |
| 216.49 | 0.685 | 7.8 | -1.36 | 3.15 | 1.58 | -- | 2.3 | 0.146 | 4.34 | -1.605e-05 | 5283 | -- | -- |
| 220.16 | 0.691 | 7.84 | -1.35 | 3.16 | 1.95 | -- | -- | 0.165 | 4.34 | 0.225 | 5340 | -- | -- |
| 749.54 | 1.28 | 7.8 | -1.27 | -- | 1.48 | -- | 3.27 | 0.22 | -- | 0.06255 | 5217 | -- | -- |
| 295.93 | 0.806 | 7.89 | -0.803 | 3.18 | -- | -0.231 | -- | -0.0514 | 4.34 | -- | -- | -- | -- |
| 296.08 | 0.806 | 7.89 | -0.801 | 3.18 | -- | -- | -- | -0.0502 | 4.34 | -- | -- | -- | -- |
| 755.94 | 1.28 | 7.86 | -1.3 | -- | 1.99 | -- | -- | 0.223 | -- | 0.3108 | 5224 | -- | -- |
| 262.6 | 0.755 | 7.82 | -- | 3.16 | 1.44 | -- | -- | 0.264 | 4.32 | 0.1253 | 5510 | -- | -- |
| 838.92 | 1.35 | 7.91 | -0.675 | -- | -- | -- | -- | 0.034 | -- | -- | -- | -- | -- |
| 312.99 | 0.828 | 7.87 | -- | 3.16 | -- | -- | -- | 0.039 | 4.34 | -- | -- | -- | -- |
| 793.98 | 1.31 | 7.84 | -- | -- | 1.6 | -- | -- | 0.339 | -- | 0.2048 | 5282 | -- | -- |
| 850.94 | 1.36 | 7.89 | -- | -- | -- | -- | -- | 0.109 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 208.89 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 5 |
| 2 | 208.90 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 5 |
| 3 | 208.90 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 5 |
| 7 | 210.20 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 8 | 210.33 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 9 |
| 9 | 210.56 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 9 |
| 10 | 210.56 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 9 |
| 11 | 210.66 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 9 |
| 47 | 211.82 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 8 | 10 |
| 48 | 211.83 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 8 | 10 |
| 49 | 211.83 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 6 | 12 |
| 50 | 211.83 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 8 | 10 |
| 64 | 212.13 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 10 | 16 |
| 128 | 212.98 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 13 | 5 |
| 129 | 212.98 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 13 | 5 |
| 136 | 213.16 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 17 | NA |
| 151 | 213.40 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 10 | 13 |
| 152 | 213.40 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 10 | 13 |
| 154 | 213.42 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 10 | 13 |
| 195 | 213.83 | wind | 1.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 236 | 214.41 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 21 | 21 |
| 252 | 214.53 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 289 | 214.90 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 18 | NA |
| 290 | 214.90 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 18 | NA |
| 291 | 214.91 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 18 | NA |
| 292 | 214.99 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 293 | 214.99 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 309 | 215.26 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 326 | 215.37 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 17 | 2 |
| 354 | 215.81 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 2 | 16 |
| 358 | 215.92 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 1 | 17 |
| 359 | 215.92 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 1 | 17 |
| 366 | 216.00 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 23 | 19 |
| 367 | 216.00 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 23 | 19 |
| 368 | 216.01 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 23 | 19 |
| 373 | 216.07 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 391 | 216.23 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 17 | 5 |
| 401 | 216.32 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 14 |
| 407 | 216.43 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 425 | 216.65 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 14 |
| 510 | 217.66 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 515 | 217.70 | precipitation | 0.1 | 4320 | > th | dose independent | sin | 22 | NA |
| 520 | 217.75 | precipitation | 0.1 | 4320 | < th | dose independent | sin | 22 | NA |
| 523 | 217.75 | precipitation | 0.1 | 4320 | < th | dose dependent | sin | 22 | NA |
| 567 | 218.01 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 576 | 218.06 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 596 | 218.23 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 667 | 218.77 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 1 | 22 |
| 737 | 219.35 | precipitation | 0.1 | 14400 | > th | dose dependent | no | NA | NA |
| 748 | 219.43 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 752 | 219.47 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 3 | 3 |
| 770 | 219.62 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 22 | 8 |
| 784 | 219.68 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 810 | 219.83 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 24 | 6 |
| 889 | 220.20 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 10 | 12 |
| 893 | 220.24 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 17 | 3 |