BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0540600 Os05g0540600|AK072324
(562 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0540600 Cyclin-like F-box domain containing protein 937 0.0
Os05g0540400 719 0.0
Os05g0541600 347 1e-95
Os05g0536800 Cyclin-like F-box domain containing protein 333 1e-91
Os04g0376800 215 8e-56
Os05g0541500 Cyclin-like F-box domain containing protein 209 5e-54
Os04g0376200 Conserved hypothetical protein 202 5e-52
Os09g0543300 172 5e-43
Os03g0156800 Cyclin-like F-box domain containing protein 148 1e-35
Os03g0146900 Conserved hypothetical protein 112 8e-25
Os04g0377100 110 3e-24
Os01g0653700 Cyclin-like F-box domain containing protein 107 2e-23
Os05g0540500 74 3e-13
Os05g0106800 69 6e-12
Os02g0826000 Conserved hypothetical protein 67 4e-11
Os02g0825100 Cyclin-like F-box domain containing protein 66 6e-11
>Os05g0540600 Cyclin-like F-box domain containing protein
Length = 562
Score = 937 bits (2422), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 468/503 (93%), Positives = 468/503 (93%)
Query: 60 QVAPRGGDRXXXXXXXXXXXXXXXXXXXXXXXXXMLSKRWARLLRWLDTLDFMVGEILPP 119
QVAPRGGDR MLSKRWARLLRWLDTLDFMVGEILPP
Sbjct: 60 QVAPRGGDRISALSDDVLLLILRRLATRAALATAMLSKRWARLLRWLDTLDFMVGEILPP 119
Query: 120 RYRRCIQLHQAAGFAAYPVDVKVLVASIKRHERLAMRNIAASINSLLDADGSDECAGQAR 179
RYRRCIQLHQAAGFAAYPVDVKVLVASIKRHERLAMRNIAASINSLLDADGSDECAGQAR
Sbjct: 120 RYRRCIQLHQAAGFAAYPVDVKVLVASIKRHERLAMRNIAASINSLLDADGSDECAGQAR 179
Query: 180 RRARVLRVEFFATHYTDLMNRLITKALDAWEVEDLEVFAKPAYWSEWSLPPIVHRFPHHG 239
RRARVLRVEFFATHYTDLMNRLITKALDAWEVEDLEVFAKPAYWSEWSLPPIVHRFPHHG
Sbjct: 180 RRARVLRVEFFATHYTDLMNRLITKALDAWEVEDLEVFAKPAYWSEWSLPPIVHRFPHHG 239
Query: 240 LCIEPHKSRLRSLKLGGCIIPPLQGFHALTKMTLQDLRNSVAKASYEDVFKSCPQLQVLH 299
LCIEPHKSRLRSLKLGGCIIPPLQGFHALTKMTLQDLRNSVAKASYEDVFKSCPQLQVLH
Sbjct: 240 LCIEPHKSRLRSLKLGGCIIPPLQGFHALTKMTLQDLRNSVAKASYEDVFKSCPQLQVLH 299
Query: 300 LKSCRWADRGILVIDFPKSGIKQLIVEFCSAIALHSLGMLESIAIRETWVRYKHCSFSHL 359
LKSCRWADRGILVIDFPKSGIKQLIVEFCSAIALHSLGMLESIAIRETWVRYKHCSFSHL
Sbjct: 300 LKSCRWADRGILVIDFPKSGIKQLIVEFCSAIALHSLGMLESIAIRETWVRYKHCSFSHL 359
Query: 360 MHMNLNLRHGYRNRLRDLCIGWDLNIQQFLGFTKNITNLVLRFTGYGRWFVPSCPSXXXX 419
MHMNLNLRHGYRNRLRDLCIGWDLNIQQFLGFTKNITNLVLRFTGYGRWFVPSCPS
Sbjct: 360 MHMNLNLRHGYRNRLRDLCIGWDLNIQQFLGFTKNITNLVLRFTGYGRWFVPSCPSLLLA 419
Query: 420 XXXXXXIADVPSSWDVSWPRLLLEAAPCLESLHIHIIPWDDDSFDEIIWQPSTLQHEELK 479
IADVPSSWDVSWPRLLLEAAPCLESLHIHIIPWDDDSFDEIIWQPSTLQHEELK
Sbjct: 420 NLRRLLIADVPSSWDVSWPRLLLEAAPCLESLHIHIIPWDDDSFDEIIWQPSTLQHEELK 479
Query: 480 ELVVIGFEGTERQIYFVNFVMEVSTTLQLVALFRYGHVQEMGRWDWKIVRQQHHWNDEEK 539
ELVVIGFEGTERQIYFVNFVMEVSTTLQLVALFRYGHVQEMGRWDWKIVRQQHHWNDEEK
Sbjct: 480 ELVVIGFEGTERQIYFVNFVMEVSTTLQLVALFRYGHVQEMGRWDWKIVRQQHHWNDEEK 539
Query: 540 AQILNQFADRDSCSITPVQVVVE 562
AQILNQFADRDSCSITPVQVVVE
Sbjct: 540 AQILNQFADRDSCSITPVQVVVE 562
>Os05g0540400
Length = 543
Score = 719 bits (1855), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/506 (73%), Positives = 405/506 (80%), Gaps = 12/506 (2%)
Query: 61 VAPRGGDRXXXXXXXXXXXXXXXXXXXXXXXXXMLSKRWARLLRWLDTLDFMVGEILPPR 120
AP GDR MLS RWA L R LD LDF+VG++LPPR
Sbjct: 46 AAPCDGDRISDLSDDVLLLILRRLDTRAALAAAMLSTRWAPLRRELDALDFVVGDVLPPR 105
Query: 121 YRRCIQLHQAAGFAAYPVDVKVLVASIKRHERLAMRNIAASINSLLDADGSDECAGQARR 180
Y R +QLH+ AY D K LVA+IKR ERLAMRN+AASI LDAD S + AG+ARR
Sbjct: 106 YHRSVQLHKTI---AYNGDAKALVATIKRQERLAMRNMAASIGCFLDADDSHDRAGRARR 162
Query: 181 RARVLR---VEFFATHYTDLMNRLITKALDAWEVEDLEVFAKPAYWSEWSLPPIVHRFPH 237
R R + VEFFATHYTDLMNRLITKALDAW VEDLEVFAK AYWS +PP VHRFPH
Sbjct: 163 RRRRIGRLRVEFFATHYTDLMNRLITKALDAWGVEDLEVFAKSAYWS---IPPDVHRFPH 219
Query: 238 HGLCIEPHKSRLRSLKLGGCIIPPLQGFHALTKMTLQDLRNSVAKASYEDVFKSCPQLQV 297
HGLC + KSRLRSLKLGGCIIPPLQGF ALT++TLQDL+NS+ K+SYE V SCPQLQV
Sbjct: 220 HGLCNQ--KSRLRSLKLGGCIIPPLQGFQALTELTLQDLQNSMPKSSYEAVISSCPQLQV 277
Query: 298 LHLKSCRWADRGILVIDFPKSGIKQLIVEFCSAIALHSLGMLESIAIRETWVRYKH-CSF 356
LHLKSCRW +GILVID P+SGIKQL VEFCS IALHSLGMLE IAIRETWV YKH SF
Sbjct: 278 LHLKSCRWVGQGILVIDAPRSGIKQLTVEFCSVIALHSLGMLERIAIRETWVSYKHHSSF 337
Query: 357 SHLMHMNLNLRHGYRNRLRDLCIGWDLNIQQFLGFTKNITNLVLRFTGYGRWFVPSCPSX 416
S +MH+NLNLRHGY NRLRDLCIGWDLNI++FLGFTKNITNLVLRFTGYGRWFVPSCPS
Sbjct: 338 SRVMHINLNLRHGYINRLRDLCIGWDLNIERFLGFTKNITNLVLRFTGYGRWFVPSCPSL 397
Query: 417 XXXXXXXXXIADVPSSWDVSWPRLLLEAAPCLESLHIHIIPWDDDSFDEIIWQPSTLQHE 476
IADVPSSWDVSWPRLLLEAAPCLESLHIHI PWDD+ DEIIW+PSTLQHE
Sbjct: 398 LLANLTRLLIADVPSSWDVSWPRLLLEAAPCLESLHIHITPWDDEHCDEIIWKPSTLQHE 457
Query: 477 ELKELVVIGFEGTERQIYFVNFVMEVSTTLQLVALFRYGHVQEMGRWDWKIVRQQHHWND 536
+LKELVV+GFEGTERQ+YFVNFVMEVST LQLVALFRYG V+EMGRWDWKIVR QHHW+D
Sbjct: 458 KLKELVVVGFEGTERQVYFVNFVMEVSTALQLVALFRYGRVEEMGRWDWKIVRLQHHWSD 517
Query: 537 EEKAQILNQFADRDSCSITPVQVVVE 562
EE++QILNQFA RDSCS T VQVV+E
Sbjct: 518 EERSQILNQFAHRDSCSTTSVQVVLE 543
>Os05g0541600
Length = 534
Score = 347 bits (891), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 214/478 (44%), Positives = 286/478 (59%), Gaps = 25/478 (5%)
Query: 95 LSKRWARLLRWLDTLDFMVGEILPPRYRRC---IQLHQAAGFAAYPVDVKVLVASIKRHE 151
LS+RWA L R LD LDF+V ++LPPRY RC + LH D +VA R+E
Sbjct: 72 LSRRWASLCRGLDALDFLVSDVLPPRYHRCRDHLLLHHPHATKGIDADDAKVVAG--RYE 129
Query: 152 RLAMRNIAASINSLLDADGSDECAGQARRRARVLRVEFFATHYTDLMNRLITKALDAWEV 211
RL+MR + ASI+S LDA D+ RRR LR+EF H++D +NRLI A+DAW V
Sbjct: 130 RLSMRKMVASIDSFLDAAPDDD-DPDRRRRITRLRLEFIINHHSDSINRLIATAIDAWGV 188
Query: 212 EDLEVFA-KPAYWSEWSLPPI--VHRFPHHGLCIEPHKSRLRSLKLGGCIIPPLQGFHAL 268
+DLE+ A PA+ L P+ +H FPH G+C +P S L SL L C IPPLQGF AL
Sbjct: 189 KDLEILAGTPAH----QLRPLDRLHIFPHQGICSDPRSSTLTSLTLANCTIPPLQGFQAL 244
Query: 269 TKMTLQDLRNSVAKASYEDVFKSCPQLQVLHLKSCRWADRGILVIDFPKSGIKQLIVEFC 328
+ LQ L +S A YE VF SC QL+VLHLKSC + G+L ++ P S I+QL+ + C
Sbjct: 245 RILVLQHLPSSTRPADYESVFTSCTQLRVLHLKSCMFD--GVLRVNAPCSSIEQLVFDHC 302
Query: 329 SA--IALHSLGMLESIAIRETWVRYKHCSFSHLMHMNLNLRHGYRNRLRDLCIGWDLNIQ 386
I L++L LE +A+ +T V ++ S L +NL R Y++ + W +N+
Sbjct: 303 GGGLIILYALPKLEEMAVVQTCVWFQRGSMPCLKRLNLIFR--YKHDHHSTSMPWGMNLM 360
Query: 387 QFLGFTKNITNLVLRFTGYGRWFVPSCPSXXXXXXXX--XXIADVPSSWDVSWPRLLLEA 444
Q +T IT L L FTG G + + PS + VPSSWDVSWPRLLLE
Sbjct: 361 QIAEYTPEITELFLEFTGRGAATMDAPPSSPLPSLPNLRKLVVVVPSSWDVSWPRLLLEV 420
Query: 445 APCLESLHIHIIPWDDDSFDEIIWQPSTLQHEELKELVVIGFEGTERQIYFVNFVMEVST 504
APCLE LH+H+ +D+ EI W+ +H +LKEL + GFEGT RQ+YFVNFVMEVS
Sbjct: 421 APCLEILHVHVAACEDEPRGEISWRRCESRHRKLKELGMSGFEGTGRQVYFVNFVMEVSL 480
Query: 505 TLQLVALFRYGHVQEMGRWDWKIVRQQHHWNDEEKAQILNQFADRDSCSITPVQVVVE 562
L+ V+L +Y V WD+ IVR+ W+ +++A +L Q +R SC+ PVQ+V E
Sbjct: 481 ALKSVSLCKYAGVY----WDYDIVREDRRWSSDDRADVLKQIGERVSCTDIPVQLVRE 534
>Os05g0536800 Cyclin-like F-box domain containing protein
Length = 522
Score = 333 bits (855), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 206/484 (42%), Positives = 281/484 (58%), Gaps = 25/484 (5%)
Query: 94 MLSKRWARLLRWLDTLDFMVGEILPPRYRRCIQLHQAA-GFAAYPVDV-KVLVASIKRHE 151
MLS+RW L LD LDF V +ILPPRY RCI H+ + AY + L+ +I+RHE
Sbjct: 47 MLSRRWTNLPHELDALDFRVSDILPPRYHRCILRHRGVMNWIAYRHAIPNSLMPAIRRHE 106
Query: 152 RLAMRNIAASINSLLDADGSDECAGQARRRARVLRVEFFATHYTDLMNRLITKALDAWEV 211
R A R + S+ S +DAD +RR+ LR+EFF TH T +NRLI+KA+D W V
Sbjct: 107 RRAARALVRSVESFIDADDGRP----SRRKVSRLRLEFFGTHNTAGINRLISKAIDDWGV 162
Query: 212 EDLEVFAKPAYWSEWSLPPIVHRFPHHGLCIEPHKSRLRSLKLGGCIIPPLQGFHALTKM 271
E+LE KP YW + P H FP HGLC +P SRLR+L LGGC++PPL + +TK+
Sbjct: 163 EELEAVGKPMYWRQ----PPTHEFPSHGLCKDPRASRLRTLTLGGCVLPPLHEYGGVTKL 218
Query: 272 TLQDLRNSVAKASYEDVFKSCPQLQVLHLKSCRWADRGILVIDFPKSGIKQLIVEFCSAI 331
L + S +YE VF SCPQLQVLHL+SC R LV+D P S I++L+V+ C I
Sbjct: 219 VLHGMAASTPAEAYEGVFTSCPQLQVLHLESCFLDRRKSLVVDAPISEIRELVVDACDII 278
Query: 332 A--LHSLGMLESIAIRETWV----RYKHCSFSHLMHMNLNLRHGYRNRLRDLCIGWDLNI 385
+ L SL L+++A T V R SF L +L +G + + DL +
Sbjct: 279 SVKLRSLPRLQNLASMGTQVLFDRRTSSSSFPCLRQWHLACLYGLARKFSRW-LEPDLTL 337
Query: 386 QQFLGFTKNITNLVLRFTGYGRWFV---PSCPSXXXXXXXXXXIADVPSSWDVSWPRLLL 442
+F +T +IT+L++RFTG RW V S +ADVPSSWD SWPR+LL
Sbjct: 338 DRFFHYTLDITDLIVRFTGPERWIVPSSCSPSPPLLRSLRRLLVADVPSSWDASWPRILL 397
Query: 443 EAAPCLESLHIHIIPWD--DDSFDEIIWQPST--LQHEELKELVVIGFEGTERQIYFVNF 498
+AAP L++LHIHI P D + E W T L + L+E + GF GT Q+YFV
Sbjct: 398 DAAPSLKTLHIHIAPRDAKKPTGGEFSWHHPTVPLHNYRLEEFAMAGFGGTVSQVYFVKL 457
Query: 499 VMEVSTTLQLVALFRYGHVQEMGRWDWKIVR-QQHHWNDEEKAQILNQFADRDSCSITPV 557
V+ T L+ V++F+ G ++ G WDW++ R Q++ WND+EK + Q D SCS +
Sbjct: 458 VVGACTALRHVSIFKGGDLKYKGNWDWEMPRLQENSWNDKEKETMEKQIMDAVSCSTDHL 517
Query: 558 QVVV 561
Q+V+
Sbjct: 518 QIVL 521
>Os04g0376800
Length = 547
Score = 215 bits (547), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 159/448 (35%), Positives = 228/448 (50%), Gaps = 35/448 (7%)
Query: 101 RLLRWLDTLDFMVGEILPPRYRRCIQLHQAAGFAAYPVDVKVLVASIKRHERLAMRNIAA 160
RL R + L F V ++LPPRY C++ H A A + L A+I R ER A+R A
Sbjct: 68 RLAREIPALVFSVRDVLPPRYHACVRAHGDAAGADA----RKLDAAIGRCERRAIRGFAD 123
Query: 161 SINSLLDADGSDECAGQARRRARVLRVEFFATHYTDLMNRLITKALDAWEVEDLEV-FAK 219
+++ ++ A RRAR LR+EFFA T + LI A+ AW VEDL++ K
Sbjct: 124 CVSAFMEPR-----VAVAPRRARSLRLEFFAARSTGFVEDLIAMAVGAWGVEDLDITVVK 178
Query: 220 PAYWSEWSLPPIVHRFPHHGLCIEPHKSRLRSLKLGGCIIPP---LQGFHALTKMTLQDL 276
PA + P FP H L E +SR+RSL + C +PP L+ + ALTK+ LQD
Sbjct: 179 PALVEQG--PCYAFCFPDHRLSAESLRSRIRSLAVSNCFLPPPSELRHYAALTKLVLQDT 236
Query: 277 RNSVAKASYEDVFKSCPQLQVLHLKSCRWADRGILVID-FPKSGIKQLIVEFCS--AIAL 333
A Y V +CP+L+ LHL+ C LV+D P+ +++L+V+ C + L
Sbjct: 237 HPRTPLAFYRQVLDACPRLRALHLRRCGAPWYAALVVDGMPE--LRELVVDGCGFHTVDL 294
Query: 334 HSLGMLESIAIRETWVRYKHCSFSHLMHMNLNLRHGYRNRLRDLCIGWDLNIQQFLGFTK 393
+ LE +A + V L ++L + +RL L W L+ LG
Sbjct: 295 RAAPALERVACVDGPVALAFGGAPRLARLSLT--YALDDRLV-LVRNWRLS--GLLGDAP 349
Query: 394 NITNLVLRFTGYGRWFVPSCPSXXXXXXXXXXIADVPSSWDVSWPRLLLEAAPCLESLHI 453
+ L++RFTG +W +AD+PS+WDVSWPR++LEAAPCLE LHI
Sbjct: 350 AMAELLVRFTGEPKWMTSGPLRSPLPGLRRLVVADMPSNWDVSWPRVILEAAPCLEVLHI 409
Query: 454 HIIPWDDD------SFDEIIWQPS-TLQHEELKELVVIGFEGTERQIYFVNFVME--VST 504
H+ +DD + EI W P+ + +HE L EL V+GF T Q+ FV V+E V+
Sbjct: 410 HVQEEEDDAGTTAAAAAEIPWPPAESARHERLAELAVVGFAETRGQVGFVRHVVEACVAL 469
Query: 505 TLQLVALFRYGHVQEMGR-WDWKIVRQQ 531
++ V GR WDWK+V +
Sbjct: 470 RRVVLVRRGRVVVGSEGRYWDWKLVAAE 497
>Os05g0541500 Cyclin-like F-box domain containing protein
Length = 313
Score = 209 bits (531), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 117/216 (54%), Positives = 142/216 (65%), Gaps = 15/216 (6%)
Query: 95 LSKRWARLLR-WLDTLDFMVGEILPPRYRRCIQLHQAA-GFAAYPVDVKVLVASIKRHER 152
LS+RW+ L R L+ LDFMVG+ILPPRY RCIQLH++A G +++ +VASI+RHER
Sbjct: 85 LSRRWSGLARAGLEALDFMVGDILPPRYHRCIQLHESASGVFDGADELRTIVASIRRHER 144
Query: 153 LAMRNIAASINSLLDADGSDECAGQA----RRRARVLRVEFFATHYTDLMNRLITKALDA 208
LAMRN+ ASIN+ LDAD RRR LRVEF ATHY D +NRL+ KA+D
Sbjct: 145 LAMRNMVASINNFLDADDGFAHGDGGGGAPRRRISRLRVEFIATHYHDCINRLVAKAVDT 204
Query: 209 WEVEDLEVFAKPAYWSEWSLPPIVHRFPHHGLCIEPHKSRLRSLKLGGCIIPPLQGFHAL 268
W VEDLEV + YW H F HGLC +PH+SRLRSLKL C+IPPLQGF AL
Sbjct: 205 WGVEDLEVLGRTTYWRHHFQD--AHIFRRHGLCNDPHRSRLRSLKLVDCVIPPLQGFQAL 262
Query: 269 TKMTLQDLRNSVAKASYEDVFKSCPQLQVLHLKSCR 304
TK+ LQDLR+S A+YE V + H SC+
Sbjct: 263 TKLVLQDLRDSTPAAAYEAVCSA-------HAYSCK 291
>Os04g0376200 Conserved hypothetical protein
Length = 560
Score = 202 bits (515), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 155/440 (35%), Positives = 221/440 (50%), Gaps = 39/440 (8%)
Query: 111 FMVGEILPPRYRRCIQLHQAAGFAAYPVDVKV---LVASIKRHERLAMRNIAASINSLLD 167
F V ++L PRY + A V L+ IKR +R A R + +LD
Sbjct: 103 FSVADVLSPRYFHSTDRLRRARARGAADAEDVEGRLLPYIKRLDRRATRAFLDGLAGVLD 162
Query: 168 ADGSDECAGQARRRARVLRVEFFATH-YTDLMNRLITKALDAWEVEDLEVFAKPAYWSEW 226
A G+ ++ L +EFF T+ ++R+I A+ W VE L+V + +
Sbjct: 163 APGARRRRARS------LYLEFFRTYDGAGTIDRMIDTAVGEWGVEHLDVVVLRSAPRDP 216
Query: 227 SLPPIVHRFPHHGLCIEPHKSRLRSLKLGGCIIPPLQGFHALTKMTLQDLRNSVAKASYE 286
LP V+ FP H L E H+SRLRSL LG C +PPL + AL ++ LQD S ++Y+
Sbjct: 217 PLP--VYAFPDHLLDDERHRSRLRSLTLGHCALPPLHRYAALERLVLQDTAASTPMSAYD 274
Query: 287 DVFKSCPQLQVLHLKSCRWADRGILVIDFPKSGIKQLIVEFCS--AIALHSLGMLESIA- 343
VF C +L+V+HL CR A LVID P+SG+++L+V+ CS A+ L L L +A
Sbjct: 275 AVFGGCRRLRVVHLLCCRGAGDA-LVIDAPRSGVEELVVDSCSFRAVELRGLPELRRLAC 333
Query: 344 IRETWVRYKHCSFS---HLMHMNLNLRHGY------RNRLRDLCIGWDLNIQQFLGFTKN 394
+ + V SF L H+NL +R+ D +G +
Sbjct: 334 LGDGTVPVVELSFGAVPRLTHVNLTFAAPTSPATPPHHRVLDSLLGG--------APPAS 385
Query: 395 ITNLVLRFTGYGRWFVPSCPSXXXXXXXXXXIADVPSSWDVSWPRLLLEAAPCLESLHIH 454
++ L +RFTG RW +P +ADVP +WDVSWPRLLLEAAP LESLHIH
Sbjct: 386 MSRLAVRFTGPKRWILPRPLGAALLGLRELLVADVPPTWDVSWPRLLLEAAPALESLHIH 445
Query: 455 I---IPWDDDSFDE-IIWQP-STLQHEELKELVVIGFEGT-ERQIYFVNFVMEVSTTLQL 508
+ P D+ I WQP +H L+E+ ++GF + R F+ +++ V TL+
Sbjct: 446 VSAPAPSPDEHLGRPIYWQPRRKFRHRRLREVRMVGFAASAPRHTRFLRYLVRVCATLER 505
Query: 509 VALFRYGHVQEMGRWDWKIV 528
V L R G V+E G W W V
Sbjct: 506 VVLVRDGRVEEDGLWGWNTV 525
>Os09g0543300
Length = 487
Score = 172 bits (437), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 148/466 (31%), Positives = 218/466 (46%), Gaps = 73/466 (15%)
Query: 95 LSKRWARLLRWLDTLDFMVGEILPP--RYRRCIQLHQAAGFAAYPVDVKVLV---ASIKR 149
LSKRW L R L LDF V +++P RY ++ + AG PV V L I R
Sbjct: 62 LSKRWPHLSRHLPALDFRVTDVIPEPDRYHWYLRRRRTAGDRRRPVRVSTLNKLDVIIGR 121
Query: 150 HERLAMRNIAASINSLLDADGSDECAGQARRRARVLRVEFFATHYTDLMNRLITKALDAW 209
+ER MR++A S+N+ LDAD D G+A RR + + +E F TH + MNRLI A+ W
Sbjct: 122 YERHGMRSLANSVNNFLDADDDDGGNGEAHRRYQRVSLEVFPTHNSGHMNRLIATAIADW 181
Query: 210 EVEDLEVFAKPAYWSEWSLPPIVHRFPHH-----GLCIEPHKSRLRSLKL---------- 254
V+DLEV + S+ + FPHH + L++LKL
Sbjct: 182 SVQDLEVTILDTTSNHGSMG---YSFPHHCFDDDAMFPAATGCSLKTLKLTNCAPLAVAG 238
Query: 255 -GGCIIPPLQGFHALTKMTLQDLRNSVAKASYEDVFKSCPQLQVLHLKSCRWADRGILVI 313
GG + P + F +LT + LQ + S YE V ++CP+L+VLHL+ R A G +
Sbjct: 239 GGGDLQHPPRVFGSLTVLVLQGMPMST---RYEGVVRACPRLEVLHLRLERLACVGGEPV 295
Query: 314 DFPKSGIKQLIVEFCSAIALHSLGMLESIAIRETWVRYKHCSFSHLMHMNLN----LRHG 369
+F + +L S H ++N L H
Sbjct: 296 EFSFGAVPRL------------------------------ARLSLSFHADVNATTWLLHT 325
Query: 370 YRNRLRDLCIGWDLNIQQFLGFTKNITNLVLRFTGYGRWFVPSC--PSXXXXXXXXXXIA 427
+ R+ + + FL ++ LVLRFTG RW P+ +A
Sbjct: 326 FAGMTRN-----EYPLFNFLNRLPDLDTLVLRFTGPERWVAPAMLHDDAPLRRLRRLLVA 380
Query: 428 DVPSSWDVSWPRLLLEAAPCLESLHIHIIPWDDDSFD---EIIWQPST-LQHEELKELVV 483
D+P SWD++W R LLEAA LE+LHIH+ + + W + +H L+ELV+
Sbjct: 381 DMPPSWDLTWTRYLLEAAAALETLHIHVDVAAGTAASPGRRVAWPTAAEFKHRALRELVI 440
Query: 484 IGFEGTERQ-IYFVNFVMEVSTTLQLVALFRYGHVQEMGRWDWKIV 528
+G+ +E Q FV+ +M L+ VAL +GHV+ G WDW+++
Sbjct: 441 VGYRPSEWQHEEFVSLMMSTCVALRDVALLEHGHVRAKGHWDWELM 486
>Os03g0156800 Cyclin-like F-box domain containing protein
Length = 723
Score = 148 bits (374), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 150/515 (29%), Positives = 228/515 (44%), Gaps = 73/515 (14%)
Query: 94 MLSKRWARLLRWLDT-LDFMVGEILPPRYRRCIQLHQAAGFAAYPVD------------- 139
+LSKRW L R T DF V ++LPPRY R +L A AAY +
Sbjct: 236 ILSKRWLNLPRRSHTCYDFAVDDLLPPRYHRLKRLWMEAK-AAYEAEKSPYVTTNRDAVN 294
Query: 140 -----------------VKVLVASIKRHERLAMRNIAASINS-LLDADGSDECAGQARRR 181
++ L A+++R+ER AMR+ +++ LL DG R
Sbjct: 295 LSDFYAMKDKMDQWTRRIRPLTAALERYERWAMRHYVKRVDAFLLPPDG-------VHRT 347
Query: 182 ARVLRVEFFATHYTDLMNRLITKALDAWEVEDLEVFAKPAYWSEWSLPPIVHRFPHHGLC 241
+ LR++ F + + R +T A+ W VED E+ + I + F C
Sbjct: 348 IQKLRLQTFGRKWNQFIQRWVTAAIARWGVEDFELNVEGRC--------IAYDFKILDGC 399
Query: 242 IEPHKSRLRSLKLGGCIIPPLQGFHALTKMTLQDLRNSVAKASY----EDVFKSCPQLQV 297
+L+ L L C PPL F++LT L L S+ K SY + C L
Sbjct: 400 ---QNLQLKRLVLFNC--PPLGSFNSLTFQRLTRL--SLCKTSYFGLANRILTHCVHLLD 452
Query: 298 LHLKSCRWADRGILVIDFPKSGIKQLIVEFC--SAIALHSLGMLESIAIRETW-VRYKHC 354
++ C G L I+ P S +K L+V+ C I LHSL LE+ A R + +
Sbjct: 453 FSIRYCPGYCAGGLRINVPTSRLKNLLVDNCKFGKIYLHSLPCLETFACRGLLPSKIYYG 512
Query: 355 SFSHLMHMNLN-LRHGYRNRLRDLCIGWDLNIQQFLGFTKNITNLVLRFTGYGRWFVPSC 413
L H+ L+ L+ +++ + +FL I +LVL+F G W P
Sbjct: 513 EVPGLRHVGLDYLKTEGDSKVDPSVSNRTYPLSKFLKRIPPIESLVLQFKGPEVWIEPIA 572
Query: 414 PSXXXXXXXXXXIADVPSSWDVSWPRLLLEAAPCLESLHIHIIPWDDDSFDEIIW---QP 470
IA+VP +WD+ W LL+AAP LES H+HI D+ S + W Q
Sbjct: 573 VPDPLLHLKKLFIANVPINWDIFWIVTLLDAAPVLESCHVHI---DNRSENMASWLDVQA 629
Query: 471 STLQHEELKELVVIGFEGTERQIYFVNFVMEVSTTLQLVALFRYGHV---QEMGRWDWKI 527
Q+ LKELVV+GF QI FV VM+ S ++ V L GHV +E ++
Sbjct: 630 QDRQYHCLKELVVVGFNAVGWQIGFVRHVMKASPRMRRVHLLD-GHVVEDKERVLEGLEV 688
Query: 528 VRQQHHWNDEEKAQILNQFADRDSCSITPVQVVVE 562
V W++ E++++L+ D + +++++E
Sbjct: 689 VPHTREWHEFERSEVLDDLWDGNGICSPQLEIILE 723
>Os03g0146900 Conserved hypothetical protein
Length = 893
Score = 112 bits (280), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 122/431 (28%), Positives = 192/431 (44%), Gaps = 54/431 (12%)
Query: 142 VLVASIKRHERLA----MRNIAASINSLLDADGSDECAGQARRRARVLRVEF--FATHYT 195
+L + ++R+ER A MR +++ L D RR R LR++ + ++
Sbjct: 426 LLESIMRRYERCAKRCAMRRYVKRVDAFLLPPPDD----GVRRTIRKLRLQTRSGSGRWS 481
Query: 196 DLMNRLITKALDAWEVEDLEVFAKPAYWSEWSLPPIVHRFPHHGLCIEPHKS-RLRSLKL 254
+ + R +T A+ W EDLE+ + HR + ++ +S RL+ L L
Sbjct: 482 ECIQRWVTAAIGRWGAEDLELDVEE------------HRVDYDFRVLDECQSMRLKRLVL 529
Query: 255 GGCIIPPLQGFHALTKMTLQDLRNSVAKASY----EDVFKSCPQLQVLHLKSCRWADRGI 310
C P+ F L L L + KASY + +C L ++ CR + + I
Sbjct: 530 INC--KPIGIFDCLMLRWLTKL--ELCKASYYGGASRILSNCVSLVDFSIRHCR-SSQPI 584
Query: 311 LVIDFPKSGIKQLIVEFCS--AIALHSLGMLESIAIR---ETWVRYKHCSFSHLMHMNLN 365
L P SG K+L+V+ C I L SL LE+ A R T V Y L H++L+
Sbjct: 585 LQFSVPDSGFKKLLVDNCEFVEIYLDSLPWLETFACRGVQPTEVYYGEVP--RLRHVSLD 642
Query: 366 LRHGYRNRLRDLCI-GWDLNIQQFLGFTKNITNLVLRFTGYGRWFVPSCPSXXXXXXXXX 424
+ ++ + + +F+ +I +LVL+F G W P
Sbjct: 643 Y---LKTKVEPSAVSNTTYRLSKFVMSMPSIESLVLQFKGPEVWIEPIALPSPLLHLKKL 699
Query: 425 XIADVPSSWDVSWPRLLLEAAPCLESLHIHIIPWDDDSFDEIIW---QPSTLQHEELKEL 481
IA+VP +WD+ W LLL+AAP LE H+HI D+ S W Q + LK+L
Sbjct: 700 FIANVPMNWDIFWIVLLLDAAPALEPCHVHI---DNGSVKMASWLEVQAQQHLYHRLKDL 756
Query: 482 VVIGFEGTERQIYFVNFVMEVSTTLQLVALFRYGHV----QEMGRWDWKIVRQQHHWNDE 537
++GF QI FV VM+ S L+ V L GHV E ++V Q W++
Sbjct: 757 TIVGFSAVGWQIGFVKHVMKASPRLRRVHLID-GHVVEDDDEQVIGGLEVVPHQREWHEF 815
Query: 538 EKAQILNQFAD 548
E++++L+ D
Sbjct: 816 ERSEVLDDLRD 826
>Os04g0377100
Length = 539
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 72/193 (37%), Positives = 98/193 (50%), Gaps = 38/193 (19%)
Query: 392 TKNITNLVLRFTGYGRWFVPSCPSXXXXXXXXXXIADVPSSWDVSWPRLLLEAAPCLESL 451
++ + +LV+RFTG RW +P S +ADVP +WDVSWPRLLL+AAP LESL
Sbjct: 331 SERMASLVVRFTGPERWILPWRVSTRLRSLRRLLVADVPPTWDVSWPRLLLQAAPSLESL 390
Query: 452 HIHIIPWDDDSFD-------EIIWQPSTLQHEELKELVVIGFEGTERQIYFV-------- 496
H+H+ DD EI+W P+ +H +L ELVV F T Q+ FV
Sbjct: 391 HVHVAATADDQPAAAAAPGREIMWPPAMFRHRKLGELVVACFGPTPGQVAFVSQKFLKLP 450
Query: 497 -NF---------------VMEVSTTLQLVALFRYGHVQEMGRWDWKIVRQQH-------H 533
NF V++V L+ V L R+G V+ G W+W++VRQQ H
Sbjct: 451 INFGHPGIKSNFEIENPEVVKVCKALRQVELLRHGEVRYDGLWEWEVVRQQEGGGGERRH 510
Query: 534 WNDEEKAQILNQF 546
W+ E+ I Q
Sbjct: 511 WSRMEEIGIKGQI 523
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 68/131 (51%), Gaps = 8/131 (6%)
Query: 95 LSKRWARLLRWLDTLDFMVGEILPPRY-RRCIQLHQAAGFAAYPVDVKVLVASIKRHERL 153
LS+RWARL R L LDF V + P Y +R + G + L AS+ R+ER
Sbjct: 52 LSRRWARLPRELPALDFRVSDAHPRGYHQRAAEFLALLGGRGDDAAGRKLEASLARYERR 111
Query: 154 AMRNIAASINSLLDADGSDECAGQARRRARVLRVEFFAT---HYTDLMNRLITKALDAWE 210
+R +A SI LDA + E RR L VEFFAT H ++RLI A+ W
Sbjct: 112 VIRGLAESITGFLDAGAASE----ERRCVSRLTVEFFATNDAHRIGCVHRLINTAVGLWG 167
Query: 211 VEDLEVFAKPA 221
VE+LEV KPA
Sbjct: 168 VEELEVAIKPA 178
>Os01g0653700 Cyclin-like F-box domain containing protein
Length = 549
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 139/502 (27%), Positives = 215/502 (42%), Gaps = 82/502 (16%)
Query: 94 MLSKRWARLLRWLDT-LDFMVGEILPPRYRRCIQLHQAAGFAAYPVD------------- 139
+LSKRW L R L T + V +ILPPRY R +L+ A AAY +
Sbjct: 70 ILSKRWRDLPRCLPTSYNLAVDDILPPRYHRLKRLNMEAK-AAYETEKIVHKLTDIYAIK 128
Query: 140 ---------VKVLVASIKRHERLAMRNIAASINSLLDADGSDECAGQARRR--ARVLRVE 188
++ L A ++R+ER AMR +N+ L A R+R + LR++
Sbjct: 129 ARHERWMTTIRPLTAILERYERRAMRRYVKQVNAFLLA------PKNVRQRWPVQKLRLQ 182
Query: 189 FFATHYTDLMNRLITKALDAWEVEDLEVFAKPAYWSEWSLPPIVHRFPHHGLCIEPHKSR 248
+ ++ + IT A+ W VED E+ G C+ +
Sbjct: 183 TLGRWHENI-DEWITTAIAKWGVEDFELVV-------------------DGFCLGYDLKQ 222
Query: 249 L---RSLKLGGCIIPPLQGFHALTKMTLQDLRN-SVAKASY----EDVFKSCPQLQVLHL 300
L RSL+L + + A +T++ L S+++ S+ D+ +C QL +
Sbjct: 223 LDTYRSLRLERLALSNCEAVCAWNCLTVKRLTKLSLSEGSFMGLLNDILANCVQLTDFRV 282
Query: 301 KSCRWADRGILVIDFPKSGIKQLIVEFCS--AIALHSLGMLESIAIRETWVRYKHCSFSH 358
+ R + I P S +K L V+ C+ I L L LE+ R + +
Sbjct: 283 AFSSYY-RAKVRIYAPSSKLKNLQVDRCNFGKIYLICLPCLETFVCRGRPTKLSYGEVPQ 341
Query: 359 LMHMNLNLRHGYRNRLRDLC-IGWDLNIQQFLGFTKNITNLVLRFTGYGRWFVPSCPSXX 417
L H+ L+ N + D +F + +LVL+F G W P
Sbjct: 342 LRHVRLDYIQTEDNDIDDESGTKRTYPPSKFFKKIPKLDSLVLQFKGTQMWIEPFVVLSE 401
Query: 418 XXXXXXXXIADVPSSWDVSWPRLLLEAAPCLESLHIHIIPWDDD--------SFDEIIWQ 469
IA+VP +WD+ W LLL+A P LESLH+HI +D S D + Q
Sbjct: 402 FSQLKKLFIANVPVNWDILWILLLLDATPALESLHVHIDNNSEDRTAGDLCASLDVGVQQ 461
Query: 470 PSTLQHEELKELVVIGFEGTERQIYFVNFVMEVSTTLQLVALFRYGHVQ----EMGRWDW 525
++ LKELVV GF+G Q FV +M+ S L+ V L G V+ E+G D
Sbjct: 462 D---RYRHLKELVVAGFDGLGWQAGFVRLIMKRSPLLRRVHLLD-GEVRDDEGELG--DL 515
Query: 526 KIVRQQHHWNDEEKAQILNQFA 547
+IV + W++ E+A++L+
Sbjct: 516 QIVPRHREWHECERAEVLDDLT 537
>Os05g0540500
Length = 126
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 61/119 (51%), Gaps = 10/119 (8%)
Query: 395 ITNLVLRFTGYGRWFVPSCPSXXXXXXXXXXIADVPSSWDVSWPRLLLEAAPCLESLHIH 454
+T+L+LR TG W P P + D+P WD +W L+E AP LE LH+H
Sbjct: 1 MTDLMLRLTGPQMWVTPESPFLEMPSLRKLLVVDMPPRWDATWICALVEEAPSLERLHVH 60
Query: 455 IIP--WDDDSFD-----EIIW--QPSTLQHEELKELVVIGFE-GTERQIYFVNFVMEVS 503
DDD EI+W +PS H L+ELVVIGF+ ER++ V +M V+
Sbjct: 61 FSQRCEDDDEMAVRRKLEIVWEQEPSRALHSHLEELVVIGFQIKKERKVQLVRHIMVVA 119
>Os05g0106800
Length = 462
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 120/289 (41%), Gaps = 27/289 (9%)
Query: 240 LCIEPHKSRLRSLKLGGCIIPPLQGFHALTKMTLQDLRNSVAKASYEDVFKSCPQLQVLH 299
LC E H +R + P F LT ++L LR + ++ SC QLQ L
Sbjct: 133 LCTEKHLARYGRRFMSFFQAYP-NAFRRLTSLSLWALR--FGDSDIPNLLASCLQLQHLT 189
Query: 300 LKSCRWADRGILVIDFPKSGIKQLIVEFCSAIALHSLGMLESIAIR-ETWVRYK-HCSFS 357
L+ C R +L ID P S + L + FCS I + + + + +TWV F
Sbjct: 190 LQDCDNGKRYVLRIDAPNSQLSTLTMAFCSYIKVELINAPKLKCVDCDTWVGANPPVCFG 249
Query: 358 HLMHMNLNLRHGYRNRLRDLCIGWDL--NIQQFLGFTKNITNLVLRFTGYGRWFVPSCPS 415
+ ++ R R C L + +L +T+L L F W +P P
Sbjct: 250 CVPMLD-------RIRFSSTCHKMQLPFKLSDWLSTVPTLTSLHLDFQDEMVWILPEEPK 302
Query: 416 XX---XXXXXXXXIADVPSSWDVSWPRLLLEAAPCLESLHIHII--PWDDDSFDE----- 465
+ + + W +LE AP LE H+ I D++ F +
Sbjct: 303 KLFPIFRNLRNVYLCSISLDCGLDWTLFVLEGAPFLERFHVKISLHICDENGFKDRADRS 362
Query: 466 -IIWQPS--TLQHEELKELVVIGFEGTERQIYFVNFVMEVSTTLQLVAL 511
++W+ S +++H+ L+ L + GFE TE I ++ V++ + LQ + L
Sbjct: 363 NVVWEASSESIKHKTLRLLDINGFETTENLIKYIRLVIQRAVGLQRIHL 411
>Os02g0826000 Conserved hypothetical protein
Length = 778
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 121/285 (42%), Gaps = 42/285 (14%)
Query: 254 LGGCIIPPLQGFHALTKMTLQDLRNSVAKASYEDVFKSCPQLQVLHLKSCRWADRGILVI 313
G C F LT++ L++LR +A+ ++ +C +L+ L L C+ D +L +
Sbjct: 399 FGACT----DAFAGLTRLHLRNLR--LAETDILNIIATCKRLEYLRLSMCQTED-SVLQM 451
Query: 314 DFPKSGIKQLIVEFCSA--IALHSLGMLESIAIRETWVRYKHCSFSHLMHMNLNLRHGYR 371
F + +L + + L SL L+ + + W +C L N+ L
Sbjct: 452 KFEHPRLVELNISSAGLELVELSSLPNLKRL-VFSLW----NCPQEPLSFGNVPLLSSLS 506
Query: 372 NRLRDLCIGWD--LNIQQFLGFTKNITNLVLRFTGYGRWFVPSCPSXXXXXXXXXXIADV 429
L D + W + + QFL +I +L L F W P CP + ++
Sbjct: 507 --LTDESMRWQKVIRLSQFLPNVLSIRDLHLNFLSEKIWVQPECPKLLAHVLRNLQVLNL 564
Query: 430 ---PSSWDVSWPRLLLEAAPCLESLHIHIIPWD------DDSFD----------EIIWQ- 469
P D++W R +EAAP L+ L I + WD DS + ++ W+
Sbjct: 565 DELPEGCDIAWTRFFIEAAPVLKELCITV--WDHWCEMETDSVEREAQGFCDKTDVEWES 622
Query: 470 --PSTLQHEELKELVVIGFEGTERQIYFVNFVMEVSTTLQLVALF 512
P +H L +L + GF+ + + ++ +ME + L+ V+L+
Sbjct: 623 SAPDGFRHYNLTKLTIYGFQPNDNFLGYIRHIMEAAVNLEDVSLY 667
>Os02g0825100 Cyclin-like F-box domain containing protein
Length = 946
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 70/307 (22%), Positives = 128/307 (41%), Gaps = 38/307 (12%)
Query: 245 HKSRLRSLKLGGCIIPPLQGFHALTKMTLQDLRNSVAKASYEDVFKSCPQLQVLHLKSCR 304
H +L G C F LT++ L++LR +A+A ++ +C +L+ L L +C+
Sbjct: 169 HNGKLLMTFFGACT----DAFAGLTRLHLRNLR--LAEADIPNIIATCKRLEYLKLSACQ 222
Query: 305 WADRGILVIDFPKSGIKQLIVEFCSA--IALHSLGMLESIAIRETWVRYKHCSFSHLMHM 362
D +L + + +L + + + L+SL L+ + WV C L
Sbjct: 223 IED-SVLQLQLEHPHLVELDISTANLDLVELNSLPNLKRLVF-SVWV----CPQEPLSFG 276
Query: 363 NLNLRHGYRNRLRDLCIGWD--LNIQQFLGFTKNITNLVLRFTGYGRWFVPSCP---SXX 417
N+ L L ++ + W + + QFL I +L L F W P CP +
Sbjct: 277 NVPLLSSLS--LTNVAMRWHKVIRLSQFLANITFIKDLHLNFLSEKIWVHPECPELLTPV 334
Query: 418 XXXXXXXXIADVPSSWDVSWPRLLLEAAPCLESLHIHI------IPWDDDSFDE------ 465
+ ++P D++W LEAAP L+ + I + I D +E
Sbjct: 335 LQNLQVLNLDELPEECDIAWTSFFLEAAPSLKEMCITVWDHWCEIETDKVEREEQGYCDK 394
Query: 466 --IIWQPST---LQHEELKELVVIGFEGTERQIYFVNFVMEVSTTLQLVALFRYGHVQEM 520
+ W+ S +H L + + GF+ E + ++ +ME + L+ ++L+ ++
Sbjct: 395 TNLEWRSSARDGFRHYNLTKFTIYGFQPNENFLGYIRHIMEAAVNLEDISLYDRKALECC 454
Query: 521 GRWDWKI 527
D KI
Sbjct: 455 EDLDPKI 461
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.326 0.139 0.451
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,836,475
Number of extensions: 656202
Number of successful extensions: 2174
Number of sequences better than 1.0e-10: 16
Number of HSP's gapped: 2119
Number of HSP's successfully gapped: 17
Length of query: 562
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 456
Effective length of database: 11,501,117
Effective search space: 5244509352
Effective search space used: 5244509352
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 159 (65.9 bits)