Os05g0536800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
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Os05g0536800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like F-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.29 | 0.259 | 9.99 | 1.52 | 0.891 | -0.188 | -0.0909 | -1.53 | 0.377 | 21.5 | 19.9 | 1710 | -- | -- |
| 32.42 | 0.265 | 10 | 1.35 | 0.905 | 0.332 | -0.0174 | -- | 0.346 | 21.7 | 15.52 | 5538 | -- | -- |
| 30.32 | 0.256 | 9.98 | 1.52 | 0.892 | -0.186 | -- | -1.53 | 0.378 | 21.5 | 19.89 | 1707 | -- | -- |
| 31.8 | 0.263 | 10 | 1.53 | 0.895 | 0.422 | -- | -- | 0.373 | 21.5 | 16.4 | 12000 | -- | -- |
| 76.79 | 0.408 | 9.96 | 1.48 | -- | -0.31 | -- | -1.73 | 0.358 | -- | 19.8 | 2061 | -- | -- |
| 34.26 | 0.274 | 10 | 1.26 | 0.902 | -- | -0.0852 | -- | 0.318 | 21.5 | -- | -- | -- | -- |
| 34.29 | 0.274 | 10 | 1.27 | 0.902 | -- | -- | -- | 0.318 | 21.5 | -- | -- | -- | -- |
| 78.56 | 0.415 | 9.99 | 1.34 | -- | 0.294 | -- | -- | 0.363 | -- | 19.8 | 2061 | -- | -- |
| 47.01 | 0.319 | 10.1 | -- | 0.89 | -0.812 | -- | -- | -0.0885 | 21.4 | 21 | 47520 | -- | -- |
| 82.1 | 0.423 | 10 | 1.27 | -- | -- | -- | -- | 0.315 | -- | -- | -- | -- | -- |
| 76.65 | 0.41 | 10.1 | -- | 0.904 | -- | -- | -- | 0.177 | 21.6 | -- | -- | -- | -- |
| 93.63 | 0.451 | 10.1 | -- | -- | -0.819 | -- | -- | -0.108 | -- | 21.8 | 47520 | -- | -- |
| 124.88 | 0.522 | 10 | -- | -- | -- | -- | -- | 0.174 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.52 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 20 | 7 |
| 4 | 28.82 | temperature | 25.0 | 270 | > th | dose independent | rect. | 17 | 8 |
| 6 | 28.98 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 17 | 8 |
| 7 | 29.08 | temperature | 25.0 | 270 | > th | dose independent | rect. | 17 | 14 |
| 12 | 29.19 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 17 | 8 |
| 44 | 29.65 | radiation | 1.0 | 270 | > th | dose independent | rect. | 17 | 19 |
| 48 | 29.67 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 10 | 13 |
| 50 | 29.68 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 11 | 11 |
| 57 | 29.72 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 14 | 8 |
| 58 | 29.72 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 11 | 12 |
| 64 | 29.73 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 18 | 13 |
| 78 | 29.76 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 14 | 9 |
| 80 | 29.77 | temperature | 25.0 | 270 | > th | dose independent | sin | 12 | NA |
| 88 | 29.77 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 94 | 29.79 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 116 | 29.85 | wind | 7.0 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 122 | 29.86 | wind | 7.0 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 144 | 29.90 | temperature | 20.0 | 4320 | > th | dose independent | sin | 20 | NA |
| 154 | 29.92 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 20 | 16 |
| 164 | 29.96 | temperature | 20.0 | 4320 | < th | dose independent | sin | 20 | NA |
| 175 | 29.98 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 17 | 10 |
| 201 | 30.04 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 239 | 30.10 | temperature | 25.0 | 270 | > th | dose independent | rect. | 20 | 1 |
| 243 | 30.11 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 247 | 30.11 | humidity | 90.0 | 90 | < th | dose independent | rect. | 19 | 17 |
| 267 | 30.14 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 282 | 30.16 | wind | 3.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 283 | 30.16 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 289 | 30.16 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 298 | 30.18 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 300 | 30.18 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 17 | 19 |
| 306 | 30.20 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 315 | 30.21 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 23 | 6 |
| 325 | 30.23 | wind | 9.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 330 | 30.23 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 336 | 30.24 | temperature | 20.0 | 30 | > th | dose independent | rect. | 20 | 16 |
| 343 | 30.25 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 344 | 30.25 | radiation | 1.0 | 270 | > th | dose independent | rect. | 5 | 7 |
| 355 | 30.25 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 373 | 30.27 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 23 | 15 |
| 393 | 30.30 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 407 | 30.31 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 24 | 3 |
| 431 | 30.33 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 3 | 5 |
| 435 | 30.33 | temperature | 25.0 | 270 | < th | dose independent | rect. | 11 | 19 |
| 440 | 30.33 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 20 | 10 |
| 462 | 30.35 | temperature | 25.0 | 720 | > th | dose dependent | sin | 14 | NA |
| 504 | 30.38 | wind | 3.0 | 43200 | < th | dose dependent | sin | 10 | NA |
| 528 | 30.39 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 18 | 19 |
| 567 | 30.42 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 3 | 2 |
| 612 | 30.44 | wind | 3.0 | 43200 | < th | dose dependent | sin | 4 | NA |
| 631 | 30.45 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 15 | 16 |
| 686 | 30.48 | wind | 7.0 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 707 | 30.48 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 4 | 10 |
| 719 | 30.48 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 13 | 20 |
| 773 | 30.51 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 775 | 30.51 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 3 |
| 838 | 30.53 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 840 | 30.53 | wind | 9.0 | 43200 | < th | dose independent | rect. | 24 | 6 |
| 850 | 30.53 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 24 | 6 |
| 860 | 30.54 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 882 | 30.55 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 24 | 7 |
| 908 | 30.56 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 7 | 2 |
| 920 | 30.56 | humidity | 90.0 | 270 | < th | dose independent | rect. | 17 | 19 |
| 939 | 30.57 | wind | 3.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 967 | 30.57 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 8 | 23 |
| 971 | 30.58 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 974 | 30.58 | wind | 9.0 | 43200 | > th | dose independent | rect. | 24 | 5 |
| 984 | 30.58 | wind | 3.0 | 43200 | < th | dose dependent | no | NA | NA |
| 989 | 30.58 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 11 | 23 |
| 996 | 30.59 | temperature | 25.0 | 10 | > th | dose independent | rect. | 20 | 5 |
| 1000 | 30.59 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 20 | 10 |