Os05g0541500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
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Os05g0541500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like F-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 141.62 | 0.559 | 4.98 | -0.378 | 0.28 | -1.18 | -0.131 | 0.641 | -0.253 | 1.72 | 29.67 | 11 | -- | -- |
| 142 | 0.555 | 4.97 | -0.267 | 0.289 | -1.19 | 0.0893 | -- | -0.23 | 1.64 | 29.5 | 11 | -- | -- |
| 141.67 | 0.554 | 4.98 | -0.368 | 0.284 | -1.18 | -- | 0.608 | -0.251 | 1.63 | 29.7 | 11 | -- | -- |
| 142.03 | 0.555 | 4.97 | -0.269 | 0.286 | -1.18 | -- | -- | -0.227 | 1.65 | 29.5 | 11 | -- | -- |
| 145.05 | 0.561 | 4.96 | -0.308 | -- | -1.08 | -- | 0.916 | -0.169 | -- | 34.9 | 6 | -- | -- |
| 160.98 | 0.595 | 4.91 | 0.0142 | 0.119 | -- | 0.318 | -- | 0.00986 | 16.6 | -- | -- | -- | -- |
| 161.17 | 0.595 | 4.91 | 0.0167 | 0.124 | -- | -- | -- | 0.0116 | 15.5 | -- | -- | -- | -- |
| 145.07 | 0.561 | 4.95 | -0.201 | -- | -0.923 | -- | -- | -0.186 | -- | 27.8 | 14 | -- | -- |
| 143.74 | 0.558 | 4.95 | -- | 0.242 | -1.07 | -- | -- | -0.177 | 1.54 | 29.5 | 11 | -- | -- |
| 162.03 | 0.595 | 4.91 | 0.0115 | -- | -- | -- | -- | 0.00833 | -- | -- | -- | -- | -- |
| 161.18 | 0.594 | 4.91 | -- | 0.124 | -- | -- | -- | 0.00976 | 15.5 | -- | -- | -- | -- |
| 146.03 | 0.563 | 4.94 | -- | -- | -0.875 | -- | -- | -0.157 | -- | 27.8 | 23 | -- | -- |
| 162.04 | 0.594 | 4.91 | -- | -- | -- | -- | -- | 0.00706 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 134.71 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 21 | 6 |
| 2 | 134.98 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 21 | 4 |
| 4 | 135.80 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 13 |
| 11 | 136.20 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 7 |
| 14 | 136.34 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 21 | 136.67 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 22 | 136.72 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 29 | 136.92 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 24 | 3 |
| 30 | 136.96 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 10 |
| 36 | 137.08 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 38 | 137.11 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 8 |
| 43 | 137.21 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 48 | 137.29 | wind | 7.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 49 | 137.32 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 3 |
| 86 | 137.75 | wind | 7.0 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 87 | 137.78 | wind | 7.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 97 | 137.97 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 102 | 138.05 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 8 |
| 105 | 138.06 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 8 |
| 115 | 138.20 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 5 |
| 119 | 138.24 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 5 |
| 121 | 138.25 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 159 | 138.61 | wind | 5.0 | 43200 | > th | dose independent | rect. | 17 | 9 |
| 166 | 138.71 | wind | 5.0 | 43200 | > th | dose independent | rect. | 18 | 7 |
| 174 | 138.78 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 176 | 138.79 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 23 | 21 |
| 180 | 138.84 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 182 | 138.84 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 183 | 138.85 | wind | 5.0 | 43200 | < th | dose independent | rect. | 17 | 9 |
| 186 | 138.87 | wind | 5.0 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 214 | 139.16 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 1 | 19 |
| 220 | 139.22 | wind | 5.0 | 43200 | > th | dose independent | rect. | 17 | 14 |
| 223 | 139.25 | wind | 5.0 | 43200 | > th | dose independent | rect. | 16 | 16 |
| 233 | 139.33 | wind | 5.0 | 43200 | > th | dose independent | sin | 13 | NA |
| 240 | 139.35 | wind | 5.0 | 43200 | < th | dose independent | rect. | 16 | 17 |
| 249 | 139.41 | wind | 5.0 | 43200 | < th | dose independent | rect. | 17 | 14 |
| 260 | 139.48 | wind | 5.0 | 43200 | < th | dose independent | sin | 13 | NA |
| 306 | 139.85 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 313 | 139.86 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 320 | 139.91 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 23 | 2 |
| 333 | 139.95 | wind | 5.0 | 43200 | > th | dose dependent | sin | 13 | NA |
| 345 | 140.00 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 20 | 5 |
| 346 | 140.01 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 14 | 2 |
| 347 | 140.01 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 22 | 3 |
| 350 | 140.02 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 369 | 140.07 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 3 | 23 |
| 383 | 140.12 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 11 | 5 |
| 398 | 140.16 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 12 | 3 |
| 399 | 140.16 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 9 | 7 |
| 409 | 140.19 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 6 | 10 |
| 536 | 140.45 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 650 | 140.63 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 660 | 140.63 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 667 | 140.64 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 7 | 18 |
| 738 | 140.74 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 7 | 19 |
| 743 | 140.75 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 771 | 140.78 | temperature | 25.0 | 4320 | < th | dose dependent | sin | 14 | NA |
| 783 | 140.79 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 830 | 140.84 | atmosphere | 1005.0 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 879 | 140.89 | temperature | 10.0 | 4320 | > th | dose dependent | sin | 12 | NA |
| 978 | 141.01 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 13 | 23 |