BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0541500 Os05g0541500|AK101190
(313 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0541500 Cyclin-like F-box domain containing protein 465 e-131
Os05g0540400 186 1e-47
Os05g0540600 Cyclin-like F-box domain containing protein 186 2e-47
Os05g0541600 151 6e-37
Os05g0536800 Cyclin-like F-box domain containing protein 145 5e-35
Os04g0376800 92 4e-19
Os04g0376200 Conserved hypothetical protein 74 2e-13
Os09g0543300 67 1e-11
Os04g0377100 65 5e-11
>Os05g0541500 Cyclin-like F-box domain containing protein
Length = 313
Score = 465 bits (1196), Expect = e-131, Method: Compositional matrix adjust.
Identities = 237/313 (75%), Positives = 237/313 (75%)
Query: 1 MLSSRGRGDAIAISGHQMRAPNPTPPRDSAMAXXXXXXXXXXXXXXXXXAPAACGDNXXX 60
MLSSRGRGDAIAISGHQMRAPNPTPPRDSAMA APAACGDN
Sbjct: 1 MLSSRGRGDAIAISGHQMRAPNPTPPRDSAMARRRKGSSYRRRRRRRRRAPAACGDNRID 60
Query: 61 XXXXXXXXXXXXXXXXXXXXXXXXXXXXWSGLARAGLEALDFMVGDILPPRYHRCIQLHE 120
WSGLARAGLEALDFMVGDILPPRYHRCIQLHE
Sbjct: 61 DLTDDLLLIILRRLDTRSALATAALSRRWSGLARAGLEALDFMVGDILPPRYHRCIQLHE 120
Query: 121 SASGVFDGADELRTIVASIRRHERLAMRNMVASINNFLXXXXXXXXXXXXXXXPRRRISR 180
SASGVFDGADELRTIVASIRRHERLAMRNMVASINNFL PRRRISR
Sbjct: 121 SASGVFDGADELRTIVASIRRHERLAMRNMVASINNFLDADDGFAHGDGGGGAPRRRISR 180
Query: 181 LRVEFIATHYHDCINRLVAKAVDTWGVEDLEVLGRTTYWRHHFQDAHIFRRHGLCNDPHR 240
LRVEFIATHYHDCINRLVAKAVDTWGVEDLEVLGRTTYWRHHFQDAHIFRRHGLCNDPHR
Sbjct: 181 LRVEFIATHYHDCINRLVAKAVDTWGVEDLEVLGRTTYWRHHFQDAHIFRRHGLCNDPHR 240
Query: 241 SRLRSLKLVDCVIPPLQGFQALTKLVLQDLRDSTPAAAYEAVCSAHAYSCKRCTXXXXXX 300
SRLRSLKLVDCVIPPLQGFQALTKLVLQDLRDSTPAAAYEAVCSAHAYSCKRCT
Sbjct: 241 SRLRSLKLVDCVIPPLQGFQALTKLVLQDLRDSTPAAAYEAVCSAHAYSCKRCTSSPAPA 300
Query: 301 XXXXXXXLMPPGQ 313
LMPPGQ
Sbjct: 301 SAAVVFSLMPPGQ 313
>Os05g0540400
Length = 543
Score = 186 bits (473), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 113/210 (53%), Positives = 142/210 (67%), Gaps = 16/210 (7%)
Query: 89 WSGLARAGLEALDFMVGDILPPRYHRCIQLHESASGVFDGADELRTIVASIRRHERLAMR 148
W+ L R L+ALDF+VGD+LPPRYHR +QLH++ + ++G + + +VA+I+R ERLAMR
Sbjct: 84 WAPLRRE-LDALDFVVGDVLPPRYHRSVQLHKTIA--YNG--DAKALVATIKRQERLAMR 138
Query: 149 NMVASINNFLXXXXXXXXXXXXXXXPRRRISRLRVEFIATHYHDCINRLVAKAVDTWGVE 208
NM ASI FL RRRI RLRVEF ATHY D +NRL+ KA+D WGVE
Sbjct: 139 NMAASIGCFLDADDSHDRAGRARRR-RRRIGRLRVEFFATHYTDLMNRLITKALDAWGVE 197
Query: 209 DLEVLGRTTYWRHHFQDAHIFRRHGLCNDPHRSRLRSLKLVDCVIPPLQGFQALTKLVLQ 268
DLEV ++ YW D H F HGLCN +SRLRSLKL C+IPPLQGFQALT+L LQ
Sbjct: 198 DLEVFAKSAYWSIP-PDVHRFPHHGLCN--QKSRLRSLKLGGCIIPPLQGFQALTELTLQ 254
Query: 269 DLRDSTPAAAYEAVCSA-------HAYSCK 291
DL++S P ++YEAV S+ H SC+
Sbjct: 255 DLQNSMPKSSYEAVISSCPQLQVLHLKSCR 284
>Os05g0540600 Cyclin-like F-box domain containing protein
Length = 562
Score = 186 bits (472), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 111/212 (52%), Positives = 135/212 (63%), Gaps = 15/212 (7%)
Query: 89 WSGLARAGLEALDFMVGDILPPRYHRCIQLHESASGVFDGADELRTIVASIRRHERLAMR 148
W+ L R L+ LDFMVG+ILPPRY RCIQLH++A G +++ +VASI+RHERLAMR
Sbjct: 99 WARLLR-WLDTLDFMVGEILPPRYRRCIQLHQAA-GFAAYPVDVKVLVASIKRHERLAMR 156
Query: 149 NMVASINNFLXXXXXXXXXXXXXXXPRRRISRLRVEFIATHYHDCINRLVAKAVDTWGVE 208
N+ ASIN+ L RRR LRVEF ATHY D +NRL+ KA+D W VE
Sbjct: 157 NIAASINSLLDADGSDECAGQA----RRRARVLRVEFFATHYTDLMNRLITKALDAWEVE 212
Query: 209 DLEVLGRTTYWRHHFQD--AHIFRRHGLCNDPHRSRLRSLKLVDCVIPPLQGFQALTKLV 266
DLEV + YW H F HGLC +PH+SRLRSLKL C+IPPLQGF ALTK+
Sbjct: 213 DLEVFAKPAYWSEWSLPPIVHRFPHHGLCIEPHKSRLRSLKLGGCIIPPLQGFHALTKMT 272
Query: 267 LQDLRDSTPAAAYEAVCSA-------HAYSCK 291
LQDLR+S A+YE V + H SC+
Sbjct: 273 LQDLRNSVAKASYEDVFKSCPQLQVLHLKSCR 304
>Os05g0541600
Length = 534
Score = 151 bits (382), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 93/201 (46%), Positives = 120/201 (59%), Gaps = 13/201 (6%)
Query: 89 WSGLARAGLEALDFMVGDILPPRYHRC---IQLHESASGVFDGADELRTIVASIRRHERL 145
W+ L R GL+ALDF+V D+LPPRYHRC + LH + AD+ + + R+ERL
Sbjct: 76 WASLCR-GLDALDFLVSDVLPPRYHRCRDHLLLHHPHATKGIDADDAKVVAG---RYERL 131
Query: 146 AMRNMVASINNFLXXXXXXXXXXXXXXXPRRRISRLRVEFIATHYHDCINRLVAKAVDTW 205
+MR MVASI++FL +RLR+EFI H+ D INRL+A A+D W
Sbjct: 132 SMRKMVASIDSFLDAAPDDDDPDRRRRI-----TRLRLEFIINHHSDSINRLIATAIDAW 186
Query: 206 GVEDLEVL-GRTTYWRHHFQDAHIFRRHGLCNDPHRSRLRSLKLVDCVIPPLQGFQALTK 264
GV+DLE+L G + HIF G+C+DP S L SL L +C IPPLQGFQAL
Sbjct: 187 GVKDLEILAGTPAHQLRPLDRLHIFPHQGICSDPRSSTLTSLTLANCTIPPLQGFQALRI 246
Query: 265 LVLQDLRDSTPAAAYEAVCSA 285
LVLQ L ST A YE+V ++
Sbjct: 247 LVLQHLPSSTRPADYESVFTS 267
>Os05g0536800 Cyclin-like F-box domain containing protein
Length = 522
Score = 145 bits (365), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 93/201 (46%), Positives = 117/201 (58%), Gaps = 18/201 (8%)
Query: 89 WSGLARAGLEALDFMVGDILPPRYHRCIQLHESASGVFDGADELRTIVASI----RRHER 144
W+ L L+ALDF V DILPPRYHRCI H GV + I S+ RRHER
Sbjct: 52 WTNLPHE-LDALDFRVSDILPPRYHRCILRHR---GVMNWIAYRHAIPNSLMPAIRRHER 107
Query: 145 LAMRNMVASINNFLXXXXXXXXXXXXXXXPRRRISRLRVEFIATHYHDCINRLVAKAVDT 204
A R +V S+ +F+ RR++SRLR+EF TH INRL++KA+D
Sbjct: 108 RAARALVRSVESFIDADDGRPS--------RRKVSRLRLEFFGTHNTAGINRLISKAIDD 159
Query: 205 WGVEDLEVLGRTTYWRHHFQDAHIFRRHGLCNDPHRSRLRSLKLVDCVIPPLQGFQALTK 264
WGVE+LE +G+ YWR H F HGLC DP SRLR+L L CV+PPL + +TK
Sbjct: 160 WGVEELEAVGKPMYWRQ--PPTHEFPSHGLCKDPRASRLRTLTLGGCVLPPLHEYGGVTK 217
Query: 265 LVLQDLRDSTPAAAYEAVCSA 285
LVL + STPA AYE V ++
Sbjct: 218 LVLHGMAASTPAEAYEGVFTS 238
>Os04g0376800
Length = 547
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 72/205 (35%), Positives = 99/205 (48%), Gaps = 22/205 (10%)
Query: 97 LEALDFMVGDILPPRYHRCIQLHESASGVFDGADELRTIVASIRRHERLAMRNMVASINN 156
+ AL F V D+LPPRYH C++ H A+ + R + A+I R ER A+R ++
Sbjct: 73 IPALVFSVRDVLPPRYHACVRAHGDAA-----GADARKLDAAIGRCERRAIRGFADCVSA 127
Query: 157 FLXXXXXXXXXXXXXXXPRRRISRLRVEFIATHYHDCINRLVAKAVDTWGVEDLEV-LGR 215
F+ RR LR+EF A + L+A AV WGVEDL++ + +
Sbjct: 128 FMEPRVAVAP---------RRARSLRLEFFAARSTGFVEDLIAMAVGAWGVEDLDITVVK 178
Query: 216 TTYWRHHFQDAHIFRRHGLCNDPHRSRLRSLKLVDCVIPP---LQGFQALTKLVLQDLRD 272
A F H L + RSR+RSL + +C +PP L+ + ALTKLVLQD
Sbjct: 179 PALVEQGPCYAFCFPDHRLSAESLRSRIRSLAVSNCFLPPPSELRHYAALTKLVLQDTHP 238
Query: 273 STPAAAYEAVCSA----HAYSCKRC 293
TP A Y V A A +RC
Sbjct: 239 RTPLAFYRQVLDACPRLRALHLRRC 263
>Os04g0376200 Conserved hypothetical protein
Length = 560
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 86/194 (44%), Gaps = 17/194 (8%)
Query: 102 FMVGDILPPRYHRCIQLHESASGVFDGADELRT--IVASIRRHERLAMRNMVASINNFLX 159
F V D+L PRY A E ++ I+R +R A R + + L
Sbjct: 103 FSVADVLSPRYFHSTDRLRRARARGAADAEDVEGRLLPYIKRLDRRATRAFLDGLAGVLD 162
Query: 160 XXXXXXXXXXXXXXPRRRISRLRVEFIATH-YHDCINRLVAKAVDTWGVEDLEVLGRTTY 218
L +EF T+ I+R++ AV WGVE L+V+ +
Sbjct: 163 APGARRRRA----------RSLYLEFFRTYDGAGTIDRMIDTAVGEWGVEHLDVVVLRSA 212
Query: 219 WRHHFQDAHIFRRHGLCNDPHRSRLRSLKLVDCVIPPLQGFQALTKLVLQDLRDSTPAAA 278
R + F H L ++ HRSRLRSL L C +PPL + AL +LVLQD STP +A
Sbjct: 213 PRDPPLPVYAFPDHLLDDERHRSRLRSLTLGHCALPPLHRYAALERLVLQDTAASTPMSA 272
Query: 279 YEAVCSAHAYSCKR 292
Y+AV C+R
Sbjct: 273 YDAVFGG----CRR 282
>Os09g0543300
Length = 487
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 97/222 (43%), Gaps = 39/222 (17%)
Query: 89 WSGLARAGLEALDFMVGDILPP--RYHRCIQLHESASGVFDGA--DELRTIVASIRRHER 144
W L+R L ALDF V D++P RYH ++ +A L + I R+ER
Sbjct: 66 WPHLSRH-LPALDFRVTDVIPEPDRYHWYLRRRRTAGDRRRPVRVSTLNKLDVIIGRYER 124
Query: 145 LAMRNMVASINNFLXXXXXXXXXXXXXXXPRRRISRLRVEFIATHYHDCINRLVAKAVDT 204
MR++ S+NNFL RR R+ +E TH +NRL+A A+
Sbjct: 125 HGMRSLANSVNNFLDADDDDGGNGEA----HRRYQRVSLEVFPTHNSGHMNRLIATAIAD 180
Query: 205 WGVEDLEVL--------GRTTY-WRHH-FQDAHIFRRHGLCNDPHRSRLRSLKLVDCVIP 254
W V+DLEV G Y + HH F D +F C+ L++LKL +C
Sbjct: 181 WSVQDLEVTILDTTSNHGSMGYSFPHHCFDDDAMFPAATGCS------LKTLKLTNCAPL 234
Query: 255 PLQG-----------FQALTKLVLQDLRDSTPAAAYEAVCSA 285
+ G F +LT LVLQ + ST YE V A
Sbjct: 235 AVAGGGGDLQHPPRVFGSLTVLVLQGMPMST---RYEGVVRA 273
>Os04g0377100
Length = 539
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 63/128 (49%), Gaps = 14/128 (10%)
Query: 89 WSGLARAGLEALDFMVGDILPPRYH-RCIQLHESASGVFDGADELRTIVASIRRHERLAM 147
W+ L R L ALDF V D P YH R + G D A R + AS+ R+ER +
Sbjct: 56 WARLPRE-LPALDFRVSDAHPRGYHQRAAEFLALLGGRGDDAAG-RKLEASLARYERRVI 113
Query: 148 RNMVASINNFLXXXXXXXXXXXXXXXPRRRISRLRVEFIAT---HYHDCINRLVAKAVDT 204
R + SI FL RR +SRL VEF AT H C++RL+ AV
Sbjct: 114 RGLAESITGFLDAGAASEE--------RRCVSRLTVEFFATNDAHRIGCVHRLINTAVGL 165
Query: 205 WGVEDLEV 212
WGVE+LEV
Sbjct: 166 WGVEELEV 173
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.137 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,013,779
Number of extensions: 298456
Number of successful extensions: 928
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 907
Number of HSP's successfully gapped: 9
Length of query: 313
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 212
Effective length of database: 11,762,187
Effective search space: 2493583644
Effective search space used: 2493583644
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 156 (64.7 bits)