Os01g0653700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
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Os01g0653700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like F-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.69 | 0.214 | 11.2 | 0.981 | 0.851 | 0.482 | -0.446 | -1.27 | 0.265 | 21 | 19.98 | 1167 | -- | -- |
| 21.52 | 0.216 | 11.2 | 1.03 | 0.864 | 0.727 | -0.644 | -- | 0.278 | 20.9 | 18.66 | 2418 | -- | -- |
| 21.28 | 0.215 | 11.2 | 1 | 0.843 | 0.488 | -- | -1.34 | 0.267 | 21 | 19.9 | 1287 | -- | -- |
| 21.75 | 0.217 | 11.2 | 0.975 | 0.85 | 0.841 | -- | -- | 0.261 | 21 | 18 | 2517 | -- | -- |
| 61.18 | 0.364 | 11.2 | 1.02 | -- | 0.462 | -- | -1.71 | 0.263 | -- | 19.6 | 1499 | -- | -- |
| 26.42 | 0.241 | 11.2 | 0.744 | 0.844 | -- | -0.403 | -- | 0.184 | 20.9 | -- | -- | -- | -- |
| 26.97 | 0.243 | 11.2 | 0.757 | 0.845 | -- | -- | -- | 0.184 | 20.9 | -- | -- | -- | -- |
| 61.98 | 0.367 | 11.2 | 1 | -- | 0.952 | -- | -- | 0.252 | -- | 18.01 | 2944 | -- | -- |
| 32.93 | 0.267 | 11.3 | -- | 0.843 | -0.483 | -- | -- | -0.0461 | 20.9 | 29.07 | 47520 | -- | -- |
| 67.67 | 0.384 | 11.2 | 0.757 | -- | -- | -- | -- | 0.178 | -- | -- | -- | -- | -- |
| 42.09 | 0.303 | 11.2 | -- | 0.843 | -- | -- | -- | 0.0996 | 20.9 | -- | -- | -- | -- |
| 73.03 | 0.398 | 11.3 | -- | -- | -0.502 | -- | -- | -0.0563 | -- | 43.2 | 47520 | -- | -- |
| 82.79 | 0.425 | 11.2 | -- | -- | -- | -- | -- | 0.094 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.30 | temperature | 20 | 30 | > th | dose independent | rect. | 5 | 17 |
| 9 | 19.97 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 18 |
| 20 | 20.31 | humidity | 50 | 43200 | > th | dose independent | rect. | 24 | 4 |
| 26 | 20.36 | temperature | 30 | 90 | < th | dose dependent | rect. | 10 | 17 |
| 27 | 20.36 | temperature | 10 | 90 | > th | dose dependent | rect. | 4 | 18 |
| 32 | 20.44 | temperature | 10 | 10 | > th | dose dependent | rect. | 5 | 17 |
| 36 | 20.54 | temperature | 15 | 1440 | > th | dose independent | rect. | 24 | 4 |
| 42 | 20.59 | temperature | 10 | 43200 | > th | dose independent | rect. | 8 | 7 |
| 43 | 20.59 | temperature | 10 | 43200 | > th | dose independent | rect. | 8 | 9 |
| 46 | 20.62 | temperature | 20 | 270 | > th | dose independent | rect. | 11 | 10 |
| 47 | 20.62 | temperature | 20 | 720 | < th | dose dependent | rect. | 2 | 15 |
| 49 | 20.63 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 9 |
| 50 | 20.63 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 11 |
| 56 | 20.66 | temperature | 10 | 270 | > th | dose dependent | rect. | 2 | 18 |
| 58 | 20.67 | temperature | 20 | 720 | < th | dose dependent | sin | 2 | NA |
| 64 | 20.68 | temperature | 20 | 1440 | < th | dose dependent | rect. | 21 | 15 |
| 73 | 20.70 | temperature | 15 | 270 | > th | dose independent | rect. | 1 | 21 |
| 74 | 20.70 | temperature | 20 | 1440 | < th | dose dependent | rect. | 21 | 6 |
| 91 | 20.73 | temperature | 20 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 101 | 20.74 | temperature | 30 | 10 | < th | dose dependent | rect. | 10 | 19 |
| 102 | 20.75 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 9 |
| 110 | 20.76 | temperature | 20 | 30 | > th | dose independent | rect. | 5 | 13 |
| 149 | 20.81 | temperature | 20 | 1440 | < th | dose dependent | sin | 8 | NA |
| 167 | 20.83 | humidity | 60 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 194 | 20.86 | temperature | 15 | 4320 | > th | dose independent | rect. | 12 | 3 |
| 260 | 20.92 | temperature | 15 | 4320 | > th | dose independent | rect. | 8 | 5 |
| 291 | 20.95 | temperature | 10 | 43200 | > th | dose independent | rect. | 8 | 5 |
| 305 | 20.96 | temperature | 15 | 4320 | > th | dose independent | rect. | 8 | 7 |
| 345 | 20.99 | temperature | 15 | 270 | > th | dose independent | rect. | 24 | 23 |
| 352 | 21.00 | temperature | 15 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 369 | 21.02 | temperature | 15 | 14400 | < th | dose dependent | rect. | 8 | 2 |
| 378 | 21.03 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 11 | 10 |
| 467 | 21.10 | temperature | 20 | 1440 | < th | dose dependent | rect. | 5 | 23 |
| 472 | 21.11 | temperature | 20 | 1440 | < th | dose dependent | no | NA | NA |
| 482 | 21.12 | radiation | 1 | 10 | < th | dose dependent | sin | 11 | NA |
| 492 | 21.13 | wind | 9 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 493 | 21.13 | temperature | 15 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 498 | 21.13 | temperature | 10 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 499 | 21.13 | humidity | 60 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 532 | 21.13 | wind | 9 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 538 | 21.13 | temperature | 10 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 539 | 21.13 | humidity | 60 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 586 | 21.14 | atmosphere | 1010 | 90 | < th | dose independent | rect. | 4 | 18 |
| 591 | 21.14 | temperature | 20 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 619 | 21.17 | temperature | 10 | 43200 | < th | dose independent | rect. | 8 | 13 |
| 621 | 21.17 | temperature | 10 | 43200 | < th | dose dependent | rect. | 8 | 13 |
| 646 | 21.19 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 1 | 20 |
| 673 | 21.21 | temperature | 20 | 720 | < th | dose independent | sin | 2 | NA |
| 674 | 21.21 | temperature | 15 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 720 | 21.23 | wind | 9 | 270 | < th | dose independent | rect. | 7 | 18 |
| 774 | 21.27 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 2 | 18 |
| 791 | 21.28 | temperature | 20 | 30 | > th | dose independent | rect. | 12 | 11 |
| 805 | 21.29 | temperature | 15 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 818 | 21.29 | temperature | 30 | 10 | < th | dose dependent | rect. | 8 | 21 |
| 820 | 21.30 | humidity | 50 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 832 | 21.30 | temperature | 10 | 270 | > th | dose dependent | rect. | 12 | 9 |
| 859 | 21.32 | temperature | 20 | 720 | > th | dose independent | sin | 2 | NA |
| 924 | 21.34 | temperature | 25 | 1440 | < th | dose dependent | rect. | 7 | 4 |
| 937 | 21.35 | wind | 7 | 270 | < th | dose independent | rect. | 1 | 6 |
| 954 | 21.35 | temperature | 20 | 4320 | < th | dose dependent | rect. | 14 | 1 |
| 956 | 21.35 | temperature | 25 | 1440 | < th | dose dependent | rect. | 7 | 6 |
| 968 | 21.36 | temperature | 20 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 969 | 21.36 | humidity | 50 | 43200 | > th | dose independent | rect. | 19 | 1 |