BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0532600 Os05g0532600|AK106711
(135 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0532600 Similar to Hexokinase 217 2e-57
Os01g0742500 Similar to Hexokinase 143 4e-35
Os05g0522500 Similar to Hexokinase 1 (EC 2.7.1.1) 137 2e-33
Os01g0190400 Similar to Hexokinase 114 1e-26
Os07g0446800 Similar to Hexokinase 108 2e-24
Os01g0940100 Similar to Hexokinase 91 2e-19
Os05g0375100 77 5e-15
Os07g0197100 Similar to Hexokinase 2 (EC 2.7.1.1) 68 2e-12
>Os05g0532600 Similar to Hexokinase
Length = 135
Score = 217 bits (553), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 115/135 (85%), Positives = 115/135 (85%)
Query: 1 MHCDRSPDLRTVGAKLKDILGVQNTSLKTRRLVVDVCDIVAKRXXXXXXXXXXXXXKKLG 60
MHCDRSPDLRTVGAKLKDILGVQNTSLKTRRLVVDVCDIVAKR KKLG
Sbjct: 1 MHCDRSPDLRTVGAKLKDILGVQNTSLKTRRLVVDVCDIVAKRAAHLAAAGIHGILKKLG 60
Query: 61 RDVPNTDKQRTVIAVDGGLYEHYTIFAECVESTLRDMLGEDVSSTIVIKLAKDGSGIGXX 120
RDVPNTDKQRTVIAVDGGLYEHYTIFAECVESTLRDMLGEDVSSTIVIKLAKDGSGIG
Sbjct: 61 RDVPNTDKQRTVIAVDGGLYEHYTIFAECVESTLRDMLGEDVSSTIVIKLAKDGSGIGAA 120
Query: 121 XXXXXHSQYREAEEL 135
HSQYREAEEL
Sbjct: 121 LLAAAHSQYREAEEL 135
>Os01g0742500 Similar to Hexokinase
Length = 506
Score = 143 bits (360), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 74/136 (54%), Positives = 93/136 (68%), Gaps = 3/136 (2%)
Query: 1 MHCDRSPDLRTVGAKLKDILGVQNTSLKTRRLVVDVCDIVAKRXXXXXXXXXXXXXKKLG 60
MH D S DL+ +GAKLKDILGV +TSL+ R + + VCD+VA+R KKLG
Sbjct: 371 MHHDTSHDLKHLGAKLKDILGVADTSLEARYITLHVCDLVAERGARLAAAGIYGILKKLG 430
Query: 61 RD-VPN--TDKQRTVIAVDGGLYEHYTIFAECVESTLRDMLGEDVSSTIVIKLAKDGSGI 117
RD VP+ + KQRTVIA+DGGLYEHY F C+E+TL D+LGE+ +S++V+KLA DGSGI
Sbjct: 431 RDRVPSDGSQKQRTVIALDGGLYEHYKKFRTCLEATLADLLGEEAASSVVVKLANDGSGI 490
Query: 118 GXXXXXXXHSQYREAE 133
G HSQY E
Sbjct: 491 GAALLAASHSQYASVE 506
>Os05g0522500 Similar to Hexokinase 1 (EC 2.7.1.1)
Length = 507
Score = 137 bits (345), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/134 (55%), Positives = 91/134 (67%), Gaps = 3/134 (2%)
Query: 1 MHCDRSPDLRTVGAKLKDILGVQNTSLKTRRLVVDVCDIVAKRXXXXXXXXXXXXXKKLG 60
MH D S DL+TVGAKLKDI+GV +TSL+ R + +CDIVA+R KKLG
Sbjct: 372 MHHDSSHDLKTVGAKLKDIVGVPDTSLEVRYITSHICDIVAERAARLAAAGIYGVLKKLG 431
Query: 61 RD-VP--NTDKQRTVIAVDGGLYEHYTIFAECVESTLRDMLGEDVSSTIVIKLAKDGSGI 117
RD +P + RTVIA+DGGLYEHY F+ C+ESTL D+LG+DVSS++V KLA DGSGI
Sbjct: 432 RDKMPKDGSKMPRTVIALDGGLYEHYKKFSSCLESTLTDLLGDDVSSSVVTKLANDGSGI 491
Query: 118 GXXXXXXXHSQYRE 131
G HSQY E
Sbjct: 492 GAALLAASHSQYAE 505
>Os01g0190400 Similar to Hexokinase
Length = 458
Score = 114 bits (286), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/128 (46%), Positives = 83/128 (64%), Gaps = 1/128 (0%)
Query: 1 MHCDRSPDLRTVGAKLKDILGVQNTSLKTRRLVVDVCDIVAKRXXXXXXXXXXXXXKKLG 60
MH D +PDL+ V KL IL + +TSL+ R++VV++CDIVA+R KLG
Sbjct: 332 MHHDETPDLKIVAEKLHQILEITHTSLEIRKMVVEICDIVARRAARLAAAGVAGILMKLG 391
Query: 61 RDVPNTDKQRTVIAVDGGLYEHYTIFAECVESTLRDMLGEDVSSTIVIKLAKDGSGIGXX 120
R+ + QR+VIA+DGGL+EHYT F EC+ESTL ++LGE+ S ++ +K A DGSGIG
Sbjct: 392 RN-GGINNQRSVIAIDGGLFEHYTKFRECLESTLGELLGEEASKSVAVKHANDGSGIGAA 450
Query: 121 XXXXXHSQ 128
S+
Sbjct: 451 LIAASQSR 458
>Os07g0446800 Similar to Hexokinase
Length = 498
Score = 108 bits (269), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/129 (47%), Positives = 82/129 (63%), Gaps = 1/129 (0%)
Query: 1 MHCDRSPDLRTVGAKLKDILGVQNTSLKTRRLVVDVCDIVAKRXXXXXXXXXXXXXKKLG 60
MH D +PDL VG KL+ LG++ TS + RR+VV+VCDIVA R KK+G
Sbjct: 368 MHHDETPDLSIVGEKLERTLGIRGTSPEARRMVVEVCDIVATRAARLAAAGIVGILKKIG 427
Query: 61 R-DVPNTDKQRTVIAVDGGLYEHYTIFAECVESTLRDMLGEDVSSTIVIKLAKDGSGIGX 119
R D ++R+V+AVDGGL+EHY F C+ES +R++LGE + +V+KLA DGSG+G
Sbjct: 428 RVDGGEGRRRRSVVAVDGGLFEHYGKFRRCMESAVRELLGEAAAERVVVKLASDGSGLGA 487
Query: 120 XXXXXXHSQ 128
HSQ
Sbjct: 488 ALVAAAHSQ 496
>Os01g0940100 Similar to Hexokinase
Length = 357
Score = 91.3 bits (225), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 77/138 (55%), Gaps = 8/138 (5%)
Query: 4 DRSPDLRTVGAKLKDILGVQNTSLKTRRLVVDVCDIVAKRXXXXXXXXXXXXXKKLGRDV 63
D SPDL V L++ L + + LKTRRLVV VCDIV +R KKLGRD
Sbjct: 216 DDSPDLSEVRRILREHLKIPDAPLKTRRLVVKVCDIVTRRAARLAAAGIVGILKKLGRDG 275
Query: 64 PNT--------DKQRTVIAVDGGLYEHYTIFAECVESTLRDMLGEDVSSTIVIKLAKDGS 115
+RTV+A++GGLY+ Y +F E ++ L ++LGE+V+ + +++ +DGS
Sbjct: 276 SGAASSGRGRGQPRRTVVAIEGGLYQGYPVFREYLDEALVEILGEEVARNVTLRVTEDGS 335
Query: 116 GIGXXXXXXXHSQYREAE 133
G+G HS R+ +
Sbjct: 336 GVGAALLAAVHSSNRQQQ 353
>Os05g0375100
Length = 511
Score = 76.6 bits (187), Expect = 5e-15, Method: Composition-based stats.
Identities = 43/125 (34%), Positives = 73/125 (58%), Gaps = 10/125 (8%)
Query: 4 DRSPDLRTVGAKLKDILGVQNTSLKTRRLVVDVCDIVAKRXXXXXXXXXXXXXKKLGRD- 62
D SPDLR VG L++ L + + LKTR+LV V DI+ +R +K+G D
Sbjct: 370 DDSPDLREVGKILEEHLKLPDVPLKTRKLVARVSDIITRRAARLAAAAIVAILQKIGCDG 429
Query: 63 ---------VPNTDKQRTVIAVDGGLYEHYTIFAECVESTLRDMLGEDVSSTIVIKLAKD 113
++RTV+A++GGL+E Y++F E + L ++LGE++++T+ +++ ++
Sbjct: 430 TLCGSTQVRTMRGVRRRTVVAIEGGLFEGYSVFREYLNEALVEILGEEIAATVSLRVMEE 489
Query: 114 GSGIG 118
GSG G
Sbjct: 490 GSGTG 494
>Os07g0197100 Similar to Hexokinase 2 (EC 2.7.1.1)
Length = 509
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 65/119 (54%), Gaps = 1/119 (0%)
Query: 1 MHCDRSPDLRTVGAKLKDILGVQNTSLKTRRLVVDVCDIVAKRXXXXXXXXXXXXXKKLG 60
M D S +L V + L D++GV SL RR+ V+V D + +R +K+
Sbjct: 372 MQQDTSDNLGEVESILSDVIGVSQASLLARRVTVEVSDCIIRRGGRLAGAGIVGILEKME 431
Query: 61 RDV-PNTDKQRTVIAVDGGLYEHYTIFAECVESTLRDMLGEDVSSTIVIKLAKDGSGIG 118
D + +RTV+A+DGGLYE Y + ++ + ++LG + S+ I I+ KDGSGIG
Sbjct: 432 NDSRGHIFGRRTVVAMDGGLYEKYPQYRRYMKEAVAELLGPERSNRIAIEHTKDGSGIG 490
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.136 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,484,648
Number of extensions: 105361
Number of successful extensions: 184
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 177
Number of HSP's successfully gapped: 8
Length of query: 135
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 45
Effective length of database: 12,336,541
Effective search space: 555144345
Effective search space used: 555144345
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 150 (62.4 bits)