Os05g0532600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Hexokinase.
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Os05g0532600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Hexokinase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.8 | 0.304 | 8.77 | -0.619 | 0.672 | 0.694 | 0.229 | 2.47 | 0.0815 | 23.3 | 33.23 | 130 | -- | -- |
| 46.77 | 0.321 | 8.75 | -0.636 | 0.617 | 0.359 | -0.226 | -- | 0.114 | 23.3 | 33.23 | 130 | -- | -- |
| 41.95 | 0.302 | 8.77 | -0.624 | 0.669 | 0.705 | -- | 2.33 | 0.0816 | 23.4 | 34.15 | 129 | -- | -- |
| 46.29 | 0.317 | 8.75 | -0.647 | 0.696 | 0.396 | -- | -- | 0.105 | 23.6 | 13.48 | 127 | -- | -- |
| 63.23 | 0.37 | 8.77 | -0.676 | -- | 0.155 | -- | 2.92 | 0.0983 | -- | 57.76 | 396 | -- | -- |
| 48.6 | 0.327 | 8.75 | -0.642 | 0.546 | -- | -0.18 | -- | 0.108 | 23.1 | -- | -- | -- | -- |
| 48.73 | 0.327 | 8.75 | -0.634 | 0.548 | -- | -- | -- | 0.109 | 23 | -- | -- | -- | -- |
| 59.36 | 0.359 | 8.76 | -0.632 | -- | 0.506 | -- | -- | 0.0634 | -- | -3.518 | 1013 | -- | -- |
| 56.67 | 0.351 | 8.74 | -- | 0.654 | 0.46 | -- | -- | 0.161 | 23.3 | 28.93 | 128 | -- | -- |
| 67.41 | 0.384 | 8.74 | -0.621 | -- | -- | -- | -- | 0.113 | -- | -- | -- | -- | -- |
| 59.31 | 0.36 | 8.74 | -- | 0.543 | -- | -- | -- | 0.18 | 22.9 | -- | -- | -- | -- |
| 71.1 | 0.393 | 8.74 | -- | -- | 0.431 | -- | -- | 0.113 | -- | -7.778e-05 | 992 | -- | -- |
| 77.6 | 0.411 | 8.73 | -- | -- | -- | -- | -- | 0.182 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.07 | temperature | 10 | 90 | > th | dose dependent | rect. | 9 | 14 |
| 2 | 36.21 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 14 |
| 18 | 37.59 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 7 |
| 23 | 37.92 | temperature | 30 | 90 | < th | dose dependent | sin | 2 | NA |
| 38 | 38.44 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 14 |
| 39 | 38.45 | temperature | 25 | 720 | > th | dose independent | rect. | 9 | 3 |
| 41 | 38.48 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 6 |
| 44 | 38.51 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 20 |
| 85 | 39.00 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 12 |
| 112 | 39.23 | temperature | 10 | 10 | > th | dose dependent | sin | 23 | NA |
| 128 | 39.36 | temperature | 25 | 90 | > th | dose independent | rect. | 8 | 7 |
| 140 | 39.42 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 13 |
| 158 | 39.50 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 14 |
| 161 | 39.51 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 18 |
| 166 | 39.53 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 12 |
| 194 | 39.62 | wind | 7 | 270 | < th | dose independent | rect. | 8 | 13 |
| 210 | 39.66 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 20 |
| 214 | 39.67 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 21 |
| 223 | 39.71 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 21 |
| 233 | 39.75 | temperature | 25 | 10 | > th | dose independent | rect. | 9 | 14 |
| 241 | 39.78 | radiation | 40 | 90 | < th | dose independent | sin | 2 | NA |
| 246 | 39.81 | temperature | 25 | 270 | < th | dose independent | sin | 3 | NA |
| 302 | 39.96 | temperature | 25 | 10 | > th | dose independent | rect. | 9 | 6 |
| 320 | 40.02 | radiation | 40 | 270 | < th | dose independent | rect. | 3 | 14 |
| 403 | 40.21 | temperature | 25 | 270 | > th | dose independent | sin | 1 | NA |
| 420 | 40.25 | temperature | 25 | 90 | > th | dose dependent | sin | 4 | NA |
| 454 | 40.33 | temperature | 15 | 270 | > th | dose independent | rect. | 4 | 13 |
| 499 | 40.40 | wind | 7 | 270 | < th | dose independent | rect. | 17 | 11 |
| 543 | 40.48 | temperature | 15 | 270 | > th | dose independent | rect. | 17 | 11 |
| 557 | 40.50 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 9 |
| 587 | 40.58 | radiation | 40 | 270 | < th | dose independent | sin | 11 | NA |
| 598 | 40.60 | humidity | 70 | 90 | > th | dose independent | sin | 5 | NA |
| 688 | 40.74 | radiation | 40 | 270 | < th | dose dependent | rect. | 3 | 13 |
| 691 | 40.75 | radiation | 40 | 10 | < th | dose independent | sin | 3 | NA |
| 710 | 40.77 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 6 | 13 |
| 717 | 40.78 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 6 | 14 |
| 722 | 40.79 | temperature | 25 | 270 | < th | dose independent | rect. | 23 | 18 |
| 754 | 40.84 | radiation | 1 | 90 | < th | dose independent | rect. | 19 | 11 |
| 758 | 40.84 | radiation | 30 | 270 | < th | dose dependent | sin | 5 | NA |
| 761 | 40.84 | radiation | 40 | 270 | < th | dose dependent | rect. | 21 | 12 |
| 784 | 40.87 | radiation | 1 | 90 | < th | dose dependent | rect. | 19 | 11 |
| 799 | 40.89 | temperature | 25 | 270 | > th | dose dependent | sin | 7 | NA |
| 829 | 40.92 | humidity | 70 | 90 | > th | dose independent | rect. | 23 | 12 |
| 842 | 40.94 | radiation | 20 | 270 | < th | dose independent | rect. | 17 | 11 |
| 846 | 40.94 | atmosphere | 1015 | 270 | < th | dose independent | rect. | 4 | 13 |
| 869 | 40.97 | radiation | 20 | 270 | < th | dose independent | rect. | 21 | 11 |
| 905 | 41.02 | radiation | 40 | 270 | < th | dose dependent | rect. | 21 | 20 |
| 907 | 41.03 | radiation | 40 | 90 | < th | dose independent | sin | 9 | NA |
| 926 | 41.04 | radiation | 40 | 270 | < th | dose dependent | rect. | 17 | 11 |
| 971 | 41.10 | temperature | 15 | 90 | > th | dose independent | rect. | 19 | 10 |
| 984 | 41.12 | humidity | 50 | 270 | > th | dose independent | rect. | 17 | 11 |
| 986 | 41.12 | radiation | 40 | 90 | < th | dose independent | rect. | 21 | 23 |