FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0375100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.16 (0.0144) R2 : 0.000419
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0132 (0.0303) R2dN8 : 0.00054 R2N8 : 0.000419
σ : 0.271
deviance : 33.62
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
30.59 0.26 3.18 0.155 0.13 -0.238 -0.0336 -0.896 -0.0442 7 39.64 5916 -- --
31.69 0.262 3.17 0.102 0.146 -0.259 0.0344 -- -0.0558 7.68 35.95 6650 -- --
30.59 0.258 3.17 0.155 0.131 -0.236 -- -0.899 -0.0429 7.06 37.03 5914 -- --
31.65 0.262 3.17 0.0811 0.166 -0.283 -- -- -0.0728 7.31 36 5007 -- --
31.46 0.261 3.18 0.155 -- -0.239 -- -0.887 -0.0424 -- 38 5841 -- --
32.64 0.268 3.16 0.0648 0.128 -- -0.0591 -- -0.00841 6.89 -- -- -- --
32.65 0.268 3.16 0.064 0.127 -- -- -- -0.00813 7.1 -- -- -- --
32.52 0.266 3.17 0.0982 -- -0.265 -- -- -0.0616 -- 33.73 7119 -- --
31.82 0.263 3.17 -- 0.165 -0.274 -- -- -0.0795 7.2 2.879 4993 -- --
33.5 0.27 3.16 0.0664 -- -- -- -- -0.00585 -- -- -- -- --
32.76 0.268 3.16 -- 0.128 -- -- -- -0.0153 7.07 -- -- -- --
32.74 0.267 3.18 -- -- -0.25 -- -- -0.0711 -- 13.93 5704 -- --
33.62 0.271 3.16 -- -- -- -- -- -0.0132 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 29.97 wind 1 30 < th dose dependent rect. 23 1
3 30.17 humidity 80 14400 < th dose dependent rect. 3 6
5 30.19 wind 1 30 < th dose dependent rect. 21 3
19 30.27 humidity 80 14400 < th dose dependent rect. 21 13
28 30.38 atmosphere 1000 720 > th dose independent rect. 21 14
34 30.48 humidity 70 14400 > th dose independent rect. 7 3
35 30.48 humidity 70 14400 > th dose independent rect. 4 6
48 30.50 humidity 70 14400 < th dose independent rect. 8 2
68 30.58 atmosphere 1000 720 > th dose independent rect. 23 10
71 30.60 wind 1 30 < th dose dependent rect. 11 13
91 30.71 wind 1 270 < th dose dependent rect. 21 2
95 30.73 atmosphere 995 720 > th dose independent rect. 23 16
97 30.74 humidity 90 1440 < th dose independent rect. 1 3
99 30.75 humidity 70 4320 > th dose independent rect. 10 1
101 30.76 humidity 90 1440 < th dose independent rect. 2 1
103 30.78 wind 1 270 < th dose independent rect. 21 2
104 30.78 humidity 90 30 < th dose independent rect. 3 2
105 30.78 humidity 80 14400 < th dose dependent sin 8 NA
107 30.78 humidity 70 4320 > th dose dependent rect. 5 7
131 30.81 atmosphere 1005 10 > th dose dependent rect. 2 3
137 30.81 humidity 50 4320 > th dose dependent rect. 23 16
140 30.82 humidity 70 4320 > th dose independent rect. 8 10
143 30.82 humidity 80 4320 > th dose dependent rect. 6 4
177 30.83 humidity 90 10 < th dose dependent rect. 3 2
187 30.84 humidity 70 4320 < th dose independent rect. 10 1
191 30.84 humidity 70 4320 > th dose independent rect. 8 7
216 30.85 humidity 50 4320 > th dose dependent sin 5 NA
217 30.85 humidity 50 14400 > th dose dependent rect. 8 1
233 30.86 humidity 70 4320 > th dose independent sin 1 NA
236 30.86 humidity 70 4320 > th dose independent rect. 16 1
237 30.86 wind 1 14400 < th dose independent rect. 4 3
260 30.86 wind 5 14400 < th dose dependent rect. 10 2
275 30.87 wind 7 14400 < th dose independent rect. 9 1
287 30.87 humidity 70 4320 < th dose independent rect. 8 9
320 30.87 humidity 90 4320 < th dose dependent rect. 23 17
325 30.88 wind 3 14400 > th dose independent rect. 10 2
345 30.88 atmosphere 1000 90 < th dose independent rect. 6 20
376 30.89 atmosphere 1000 720 > th dose independent rect. 3 8
417 30.89 humidity 50 4320 > th dose dependent rect. 11 2
463 30.90 humidity 70 4320 < th dose independent rect. 10 8
472 30.90 wind 1 14400 < th dose dependent rect. 6 1
481 30.90 humidity 90 4320 < th dose dependent rect. 5 11
540 30.92 humidity 70 4320 < th dose independent sin 2 NA
541 30.92 wind 1 14400 > th dose independent rect. 4 3
575 30.92 humidity 70 4320 > th dose dependent rect. 10 1
582 30.92 humidity 90 4320 < th dose dependent rect. 10 6
611 30.93 humidity 70 4320 > th dose independent no NA NA
615 30.93 humidity 70 4320 > th dose independent rect. 14 4
694 30.93 humidity 70 4320 > th dose independent rect. 10 23
695 30.93 humidity 70 4320 > th dose independent rect. 13 23
697 30.93 humidity 70 4320 > th dose independent rect. 16 23
702 30.93 atmosphere 1000 30 > th dose independent rect. 23 23
706 30.93 humidity 80 4320 < th dose dependent rect. 11 2
736 30.94 wind 5 14400 < th dose independent rect. 10 5
757 30.94 humidity 90 4320 < th dose dependent sin 3 NA
812 30.95 temperature 30 1440 > th dose independent rect. 15 20
813 30.95 temperature 30 1440 < th dose independent rect. 15 20
815 30.95 atmosphere 1000 90 > th dose independent rect. 3 23
852 30.96 humidity 70 4320 < th dose independent rect. 14 4
935 30.97 humidity 70 4320 < th dose independent rect. 16 1
966 30.97 wind 1 14400 < th dose dependent rect. 4 3