Os07g0197100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Hexokinase 2 (EC 2.7.1.1).
FiT-DB / Search/ Help/ Sample detail
|
Os07g0197100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Hexokinase 2 (EC 2.7.1.1).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.5 | 0.246 | 9.91 | -0.436 | 0.563 | 0.368 | -0.0967 | 2.35 | -0.019 | 5.17 | 1.981 | 5616 | -- | -- |
| 29.99 | 0.255 | 9.85 | 0.074 | 0.572 | 0.357 | -0.00437 | -- | 0.122 | 4.95 | 23.6 | 1313 | -- | -- |
| 27.52 | 0.244 | 9.91 | -0.437 | 0.562 | 0.374 | -- | 2.36 | -0.0185 | 5.17 | 1.92 | 5617 | -- | -- |
| 29.66 | 0.254 | 9.84 | 0.0731 | 0.583 | 0.317 | -- | -- | 0.127 | 5.52 | 54.75 | 1434 | -- | -- |
| 34.81 | 0.275 | 9.87 | -0.121 | -- | 0.857 | -- | 1.79 | 0.115 | -- | 3.76 | 5063 | -- | -- |
| 33.55 | 0.272 | 9.86 | 0.0177 | 0.571 | -- | -0.00832 | -- | 0.0446 | 5.65 | -- | -- | -- | -- |
| 33.55 | 0.271 | 9.86 | 0.0177 | 0.571 | -- | -- | -- | 0.0447 | 5.66 | -- | -- | -- | -- |
| 30.62 | 0.258 | 9.85 | 0.0701 | -- | 0.745 | -- | -- | 0.126 | -- | 75.45 | 673 | -- | -- |
| 29.79 | 0.254 | 9.84 | -- | 0.586 | 0.316 | -- | -- | 0.119 | 5.53 | 55.12 | 1434 | -- | -- |
| 50.48 | 0.332 | 9.87 | 0.0359 | -- | -- | -- | -- | 0.0583 | -- | -- | -- | -- | -- |
| 33.55 | 0.271 | 9.86 | -- | 0.571 | -- | -- | -- | 0.0427 | 5.66 | -- | -- | -- | -- |
| 30.75 | 0.258 | 9.86 | -- | -- | 0.742 | -- | -- | 0.118 | -- | 272.6 | 673 | -- | -- |
| 50.52 | 0.332 | 9.87 | -- | -- | -- | -- | -- | 0.0544 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 25.61 | temperature | 10 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 2 | 25.62 | temperature | 30 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 123 | 25.93 | temperature | 10 | 14400 | > th | dose dependent | sin | 23 | NA |
| 188 | 25.97 | temperature | 30 | 14400 | < th | dose dependent | rect. | 7 | 13 |
| 275 | 26.02 | temperature | 30 | 14400 | < th | dose dependent | sin | 23 | NA |
| 316 | 26.04 | radiation | 10 | 1440 | > th | dose independent | rect. | 17 | 17 |
| 341 | 26.05 | radiation | 10 | 1440 | > th | dose independent | rect. | 5 | 5 |
| 355 | 26.05 | temperature | 10 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 545 | 26.13 | radiation | 20 | 4320 | > th | dose independent | rect. | 6 | 2 |
| 672 | 26.17 | temperature | 10 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 703 | 26.18 | temperature | 30 | 14400 | < th | dose dependent | rect. | 19 | 1 |
| 735 | 26.19 | temperature | 30 | 14400 | < th | dose dependent | rect. | 16 | 4 |
| 768 | 26.20 | temperature | 10 | 14400 | > th | dose dependent | no | NA | NA |
| 792 | 26.20 | temperature | 10 | 14400 | > th | dose dependent | rect. | 19 | 23 |
| 822 | 26.21 | temperature | 10 | 14400 | > th | dose dependent | rect. | 15 | 23 |
| 864 | 26.22 | temperature | 10 | 14400 | > th | dose dependent | rect. | 13 | 23 |
| 893 | 26.23 | temperature | 10 | 14400 | > th | dose dependent | rect. | 11 | 23 |
| 947 | 26.25 | humidity | 70 | 1440 | < th | dose independent | rect. | 10 | 2 |
| 948 | 26.25 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 3 |
| 964 | 26.25 | temperature | 30 | 14400 | < th | dose dependent | no | NA | NA |