Os01g0742500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Hexokinase.
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Os01g0742500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Hexokinase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 85.63 | 0.435 | 9.73 | -1.56 | 2.01 | -0.766 | 0.729 | 0.268 | -0.786 | 9.06 | 27.19 | 1342 | -- | -- |
| 85.78 | 0.431 | 9.72 | -1.56 | 2.01 | -0.775 | 0.754 | -- | -0.781 | 9.07 | 27.17 | 1339 | -- | -- |
| 87.4 | 0.435 | 9.73 | -1.55 | 2.01 | -0.769 | -- | 0.396 | -0.791 | 9.07 | 27.17 | 1323 | -- | -- |
| 87.73 | 0.436 | 9.72 | -1.51 | 2 | -0.752 | -- | -- | -0.772 | 9.07 | 27.18 | 1337 | -- | -- |
| 303.27 | 0.816 | 9.74 | -1.42 | -- | -0.576 | -- | -0.398 | -0.608 | -- | 27.17 | 1323 | -- | -- |
| 106.64 | 0.484 | 9.69 | -1.41 | 1.94 | -- | 0.674 | -- | -0.621 | 8.88 | -- | -- | -- | -- |
| 108.18 | 0.487 | 9.69 | -1.39 | 1.94 | -- | -- | -- | -0.621 | 8.88 | -- | -- | -- | -- |
| 303 | 0.811 | 9.77 | -1.46 | -- | -0.705 | -- | -- | -0.731 | -- | 27.11 | 1584 | -- | -- |
| 127.32 | 0.526 | 9.71 | -- | 2.08 | -1.32 | -- | -- | -0.75 | 8.73 | 9.82 | 7786 | -- | -- |
| 323.51 | 0.84 | 9.74 | -1.39 | -- | -- | -- | -- | -0.607 | -- | -- | -- | -- | -- |
| 159 | 0.59 | 9.66 | -- | 1.94 | -- | -- | -- | -0.466 | 8.94 | -- | -- | -- | -- |
| 302.36 | 0.813 | 9.69 | -- | -- | -0.837 | -- | -- | -0.393 | -- | 9.82 | 7786 | -- | -- |
| 374.36 | 0.903 | 9.71 | -- | -- | -- | -- | -- | -0.453 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 84.28 | radiation | 1 | 1440 | > th | dose dependent | rect. | 12 | 2 |
| 2 | 84.55 | radiation | 40 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 3 | 84.56 | humidity | 50 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 4 | 84.64 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 7 | 84.79 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 5 |
| 12 | 84.95 | humidity | 90 | 1440 | < th | dose dependent | rect. | 12 | 2 |
| 45 | 85.82 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 17 |
| 48 | 85.82 | radiation | 30 | 1440 | < th | dose dependent | rect. | 8 | 8 |
| 60 | 85.87 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 11 |
| 65 | 85.89 | radiation | 40 | 1440 | < th | dose dependent | rect. | 11 | 17 |
| 80 | 85.95 | radiation | 40 | 1440 | < th | dose dependent | rect. | 11 | 11 |
| 98 | 85.99 | radiation | 20 | 1440 | > th | dose independent | rect. | 11 | 21 |
| 103 | 86.01 | humidity | 80 | 1440 | < th | dose dependent | rect. | 12 | 9 |
| 112 | 86.10 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 21 |
| 159 | 86.24 | radiation | 20 | 1440 | > th | dose independent | rect. | 11 | 5 |
| 165 | 86.25 | radiation | 20 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 170 | 86.25 | radiation | 30 | 1440 | < th | dose dependent | rect. | 8 | 20 |
| 188 | 86.29 | radiation | 30 | 1440 | < th | dose dependent | rect. | 8 | 14 |
| 196 | 86.31 | radiation | 40 | 1440 | < th | dose dependent | sin | 21 | NA |
| 197 | 86.31 | humidity | 70 | 1440 | < th | dose dependent | rect. | 15 | 1 |
| 203 | 86.33 | radiation | 20 | 1440 | < th | dose independent | rect. | 8 | 8 |
| 204 | 86.33 | temperature | 30 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 294 | 86.42 | radiation | 40 | 1440 | < th | dose independent | rect. | 12 | 3 |
| 380 | 86.56 | radiation | 20 | 1440 | < th | dose independent | sin | 21 | NA |
| 461 | 86.74 | radiation | 1 | 1440 | > th | dose dependent | sin | 19 | NA |
| 465 | 86.75 | humidity | 70 | 1440 | < th | dose independent | rect. | 12 | 8 |
| 496 | 86.77 | radiation | 20 | 1440 | < th | dose independent | rect. | 1 | 15 |
| 501 | 86.77 | radiation | 20 | 1440 | < th | dose independent | rect. | 21 | 19 |
| 522 | 86.79 | radiation | 20 | 1440 | < th | dose independent | rect. | 8 | 20 |
| 530 | 86.80 | radiation | 40 | 1440 | < th | dose independent | rect. | 12 | 17 |
| 547 | 86.82 | radiation | 20 | 1440 | < th | dose independent | rect. | 8 | 14 |
| 583 | 86.86 | radiation | 20 | 1440 | > th | dose independent | sin | 21 | NA |
| 596 | 86.88 | radiation | 40 | 1440 | > th | dose independent | rect. | 12 | 3 |
| 606 | 86.89 | radiation | 40 | 1440 | < th | dose independent | rect. | 12 | 10 |
| 609 | 86.89 | radiation | 40 | 1440 | < th | dose independent | rect. | 12 | 12 |
| 626 | 86.91 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 650 | 86.92 | radiation | 30 | 1440 | < th | dose dependent | rect. | 1 | 15 |
| 651 | 86.92 | radiation | 30 | 1440 | < th | dose dependent | rect. | 21 | 19 |
| 653 | 86.93 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 12 |
| 684 | 86.95 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 687 | 86.95 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 20 |
| 690 | 86.95 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 703 | 86.96 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 21 |
| 754 | 87.00 | radiation | 20 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 772 | 87.01 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 17 |
| 783 | 87.02 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 7 |
| 813 | 87.03 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 9 |
| 859 | 87.07 | humidity | 80 | 1440 | < th | dose dependent | sin | 18 | NA |
| 871 | 87.08 | temperature | 30 | 1440 | > th | dose independent | sin | 18 | NA |
| 903 | 87.10 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 6 |
| 904 | 87.10 | radiation | 20 | 1440 | > th | dose independent | rect. | 7 | 7 |