Os01g0940100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Hexokinase.
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Os01g0940100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Hexokinase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 106.63 | 0.485 | 7.16 | 0.874 | 1.4 | 1.6 | -0.0278 | -15.9 | -0.43 | 7.73 | 29.9 | 4284 | -- | -- |
| 132.13 | 0.539 | 7.48 | -1.82 | 1.44 | -0.0671 | 0.0646 | -- | -0.591 | 7.54 | 29.9 | 4284 | -- | -- |
| 106.34 | 0.48 | 7.16 | 0.877 | 1.4 | 1.54 | -- | -15.4 | -0.373 | 7.72 | 29.8 | 4261 | -- | -- |
| 126.7 | 0.524 | 7.44 | -1.05 | 1.5 | 0.805 | -- | -- | -0.389 | 7.63 | 15.36 | 47520 | -- | -- |
| 207.92 | 0.672 | 7.15 | 1.48 | -- | 1.73 | -- | -16.8 | -0.103 | -- | 29.5 | 4108 | -- | -- |
| 132.28 | 0.539 | 7.49 | -1.81 | 1.44 | -- | 0.0346 | -- | -0.593 | 7.59 | -- | -- | -- | -- |
| 132.28 | 0.539 | 7.49 | -1.81 | 1.44 | -- | -- | -- | -0.593 | 7.59 | -- | -- | -- | -- |
| 236.32 | 0.716 | 7.48 | -1.16 | -- | 0.71 | -- | -- | -0.395 | -- | 14.53 | 47520 | -- | -- |
| 135 | 0.541 | 7.37 | -- | 1.43 | 1.55 | -- | -- | -0.101 | 7.56 | 16.49 | 47520 | -- | -- |
| 243.07 | 0.729 | 7.52 | -1.79 | -- | -- | -- | -- | -0.571 | -- | -- | -- | -- | -- |
| 218.26 | 0.691 | 7.44 | -- | 1.42 | -- | -- | -- | -0.392 | 7.68 | -- | -- | -- | -- |
| 245.16 | 0.729 | 7.41 | -- | -- | 1.53 | -- | -- | -0.0839 | -- | 16.45 | 47520 | -- | -- |
| 327.19 | 0.844 | 7.47 | -- | -- | -- | -- | -- | -0.373 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 105.79 | temperature | 30 | 4320 | < th | dose independent | rect. | 10 | 5 |
| 2 | 105.81 | temperature | 30 | 4320 | > th | dose independent | rect. | 11 | 3 |
| 3 | 105.89 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 3 |
| 4 | 105.90 | temperature | 30 | 4320 | > th | dose independent | rect. | 10 | 5 |
| 6 | 105.95 | temperature | 30 | 4320 | < th | dose independent | rect. | 5 | 10 |
| 17 | 106.06 | temperature | 30 | 4320 | < th | dose independent | rect. | 21 | 18 |
| 22 | 106.10 | temperature | 30 | 4320 | < th | dose independent | sin | 3 | NA |
| 49 | 106.47 | temperature | 30 | 4320 | < th | dose independent | rect. | 15 | 23 |
| 57 | 106.54 | temperature | 30 | 4320 | > th | dose independent | sin | 3 | NA |
| 106 | 106.68 | temperature | 30 | 4320 | < th | dose independent | rect. | 9 | 13 |
| 187 | 106.74 | temperature | 30 | 4320 | < th | dose independent | rect. | 9 | 21 |
| 236 | 106.79 | temperature | 30 | 4320 | < th | dose independent | no | NA | NA |
| 261 | 106.86 | temperature | 30 | 4320 | > th | dose independent | rect. | 15 | 23 |
| 360 | 107.12 | temperature | 30 | 4320 | > th | dose independent | no | NA | NA |
| 544 | 108.26 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 6 |
| 580 | 109.33 | temperature | 25 | 4320 | > th | dose dependent | rect. | 16 | 19 |
| 583 | 109.39 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 6 |
| 591 | 109.47 | temperature | 25 | 4320 | > th | dose dependent | sin | 8 | NA |
| 601 | 109.53 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 6 |
| 612 | 109.67 | temperature | 25 | 4320 | > th | dose dependent | rect. | 16 | 22 |
| 623 | 109.88 | temperature | 25 | 4320 | > th | dose dependent | rect. | 22 | 13 |
| 668 | 110.23 | temperature | 25 | 4320 | > th | dose dependent | rect. | 5 | 22 |
| 671 | 110.24 | temperature | 25 | 4320 | > th | dose dependent | no | NA | NA |
| 676 | 110.24 | temperature | 25 | 4320 | > th | dose dependent | rect. | 20 | 23 |
| 682 | 110.25 | temperature | 25 | 4320 | > th | dose dependent | rect. | 22 | 23 |
| 707 | 110.29 | temperature | 25 | 4320 | > th | dose dependent | rect. | 8 | 23 |
| 749 | 110.40 | temperature | 25 | 4320 | > th | dose dependent | rect. | 5 | 6 |
| 794 | 110.49 | wind | 1 | 43200 | < th | dose independent | rect. | 4 | 3 |
| 801 | 110.50 | temperature | 25 | 4320 | > th | dose dependent | rect. | 16 | 2 |
| 807 | 110.52 | temperature | 25 | 4320 | < th | dose independent | rect. | 5 | 3 |
| 827 | 110.57 | temperature | 25 | 4320 | > th | dose independent | rect. | 5 | 3 |
| 839 | 110.60 | temperature | 25 | 4320 | > th | dose dependent | rect. | 5 | 9 |
| 878 | 110.71 | temperature | 25 | 4320 | > th | dose dependent | rect. | 15 | 13 |
| 901 | 110.78 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 902 | 110.78 | wind | 1 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 928 | 110.81 | temperature | 25 | 4320 | > th | dose dependent | rect. | 13 | 14 |
| 937 | 110.83 | temperature | 25 | 4320 | > th | dose dependent | rect. | 8 | 3 |
| 949 | 110.88 | temperature | 25 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 969 | 110.95 | radiation | 20 | 14400 | > th | dose independent | rect. | 7 | 1 |