BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0443500 Os05g0443500|AK103416
(148 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0443500 Similar to Ferredoxin VI, chloroplast precurso... 306 3e-84
Os03g0835900 Similar to Ferredoxin III, chloroplast precurs... 184 2e-47
Os01g0860601 Similar to Ferredoxin, root R-B1 181 1e-46
D83660 171 1e-43
Os04g0412200 Similar to Ferredoxin I 158 1e-39
Os08g0104600 Ferredoxin I, chloroplast precursor (Anti-dise... 138 1e-33
AK119605 138 1e-33
Os03g0685000 Similar to Ferredoxin 84 5e-17
AK110576 77 4e-15
Os03g0659200 Similar to Ferredoxin 72 1e-13
>Os05g0443500 Similar to Ferredoxin VI, chloroplast precursor (Fd VI)
Length = 148
Score = 306 bits (785), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 148/148 (100%), Positives = 148/148 (100%)
Query: 1 MATATAPRLCFPKPGAAIAPATKSPSFIGYAKQTLNMSGLRISNKFRVSATAVHKVKLIG 60
MATATAPRLCFPKPGAAIAPATKSPSFIGYAKQTLNMSGLRISNKFRVSATAVHKVKLIG
Sbjct: 1 MATATAPRLCFPKPGAAIAPATKSPSFIGYAKQTLNMSGLRISNKFRVSATAVHKVKLIG 60
Query: 61 PDGVEHEFEAPEDTYILEAAETAGVELPFSCRAGSCSTCAGKMSSGEVDQSEGSFLDENQ 120
PDGVEHEFEAPEDTYILEAAETAGVELPFSCRAGSCSTCAGKMSSGEVDQSEGSFLDENQ
Sbjct: 61 PDGVEHEFEAPEDTYILEAAETAGVELPFSCRAGSCSTCAGKMSSGEVDQSEGSFLDENQ 120
Query: 121 MGEGYVLTCISYPKADCVIHTHKEEELY 148
MGEGYVLTCISYPKADCVIHTHKEEELY
Sbjct: 121 MGEGYVLTCISYPKADCVIHTHKEEELY 148
>Os03g0835900 Similar to Ferredoxin III, chloroplast precursor (Fd III)
Length = 153
Score = 184 bits (467), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 92/153 (60%), Positives = 113/153 (73%), Gaps = 5/153 (3%)
Query: 1 MATATAPRLCFP----KPGAAIAPATKSPSFIGYAKQTLNMSGLRISNK-FRVSATAVHK 55
MAT T C + A+ A KSP+ + + Q + L+ S+K VSA A +K
Sbjct: 1 MATCTLATSCVSLSNARTQASKVAAVKSPASLSFFSQGMQFPSLKASSKKLDVSAMATYK 60
Query: 56 VKLIGPDGVEHEFEAPEDTYILEAAETAGVELPFSCRAGSCSTCAGKMSSGEVDQSEGSF 115
VKLI P+G EHEFEAP+DTYIL+AAETAGVELP+SCRAG+CSTCAGK+ +G VDQS+GSF
Sbjct: 61 VKLITPEGQEHEFEAPDDTYILDAAETAGVELPYSCRAGACSTCAGKIEAGSVDQSDGSF 120
Query: 116 LDENQMGEGYVLTCISYPKADCVIHTHKEEELY 148
LD+ Q EGYVLTC+SYPK+DCVIHTHKE +LY
Sbjct: 121 LDDAQQEEGYVLTCVSYPKSDCVIHTHKEGDLY 153
>Os01g0860601 Similar to Ferredoxin, root R-B1
Length = 165
Score = 181 bits (460), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 83/114 (72%), Positives = 98/114 (85%)
Query: 35 LNMSGLRISNKFRVSATAVHKVKLIGPDGVEHEFEAPEDTYILEAAETAGVELPFSCRAG 94
L G R S +FR SA AVHKVKLIGPDG E E E PEDTY+L+AAE AG+ELP+SCRAG
Sbjct: 52 LTSGGARFSGRFRASAAAVHKVKLIGPDGAESELEVPEDTYVLDAAEEAGLELPYSCRAG 111
Query: 95 SCSTCAGKMSSGEVDQSEGSFLDENQMGEGYVLTCISYPKADCVIHTHKEEELY 148
SCSTCAGK++SGEVDQS+GSFL + Q+ +GYVLTCISYPK+DCVI+THKEEE++
Sbjct: 112 SCSTCAGKLASGEVDQSDGSFLADEQIEQGYVLTCISYPKSDCVIYTHKEEEVH 165
>D83660
Length = 87
Score = 171 bits (434), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 82/82 (100%), Positives = 82/82 (100%)
Query: 67 EFEAPEDTYILEAAETAGVELPFSCRAGSCSTCAGKMSSGEVDQSEGSFLDENQMGEGYV 126
EFEAPEDTYILEAAETAGVELPFSCRAGSCSTCAGKMSSGEVDQSEGSFLDENQMGEGYV
Sbjct: 6 EFEAPEDTYILEAAETAGVELPFSCRAGSCSTCAGKMSSGEVDQSEGSFLDENQMGEGYV 65
Query: 127 LTCISYPKADCVIHTHKEEELY 148
LTCISYPKADCVIHTHKEEELY
Sbjct: 66 LTCISYPKADCVIHTHKEEELY 87
>Os04g0412200 Similar to Ferredoxin I
Length = 152
Score = 158 bits (399), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 82/149 (55%), Positives = 104/149 (69%), Gaps = 4/149 (2%)
Query: 3 TATAPRLC--FPKPGAAIA-PATKSPSFIGYAKQTLNMSGLRISNKFRVSATAVHKVKLI 59
T T P LC KP + P T+SP+ G + TL++S R +A AV+ VKLI
Sbjct: 5 TVTTPILCNLSAKPRDTLRLPTTRSPND-GTRRTTLHLSSSRARGDLIRAAAAVYTVKLI 63
Query: 60 GPDGVEHEFEAPEDTYILEAAETAGVELPFSCRAGSCSTCAGKMSSGEVDQSEGSFLDEN 119
GP+G E + PEDTYIL+AAE AGV+LP+SCRAG+CSTCAGK+ G VDQS+ SFLD+
Sbjct: 64 GPEGQESVIKVPEDTYILDAAEEAGVDLPYSCRAGACSTCAGKVVEGGVDQSDQSFLDDA 123
Query: 120 QMGEGYVLTCISYPKADCVIHTHKEEELY 148
Q+G GYVLTC++YP A+ VI THKE +LY
Sbjct: 124 QVGAGYVLTCVAYPTANSVIQTHKEADLY 152
>Os08g0104600 Ferredoxin I, chloroplast precursor (Anti-disease protein 1)
Length = 139
Score = 138 bits (348), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 65/114 (57%), Positives = 86/114 (75%), Gaps = 3/114 (2%)
Query: 36 NMSGLRISNKF--RVSATAVHKVKLIGPDGVEHEFEAPEDTYILEAAETAGVELPFSCRA 93
+S L SNK R+ A + VKLI PDG E E + P+D YIL+ AE G++LP+SCRA
Sbjct: 26 RVSVLPASNKLGDRLRMQATYNVKLITPDG-EVELQVPDDVYILDQAEEEGIDLPYSCRA 84
Query: 94 GSCSTCAGKMSSGEVDQSEGSFLDENQMGEGYVLTCISYPKADCVIHTHKEEEL 147
GSCS+CAGK+ SGE+DQS+ SFLD++Q+ G+VLTC +YPK+D VI THKE++L
Sbjct: 85 GSCSSCAGKVVSGEIDQSDQSFLDDDQVAAGWVLTCHAYPKSDVVIETHKEDDL 138
>AK119605
Length = 139
Score = 138 bits (348), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 65/114 (57%), Positives = 86/114 (75%), Gaps = 3/114 (2%)
Query: 36 NMSGLRISNKF--RVSATAVHKVKLIGPDGVEHEFEAPEDTYILEAAETAGVELPFSCRA 93
+S L SNK R+ A + VKLI PDG E E + P+D YIL+ AE G++LP+SCRA
Sbjct: 26 RVSVLPASNKLGDRLRMQATYNVKLITPDG-EVELQVPDDVYILDQAEEEGIDLPYSCRA 84
Query: 94 GSCSTCAGKMSSGEVDQSEGSFLDENQMGEGYVLTCISYPKADCVIHTHKEEEL 147
GSCS+CAGK+ SGE+DQS+ SFLD++Q+ G+VLTC +YPK+D VI THKE++L
Sbjct: 85 GSCSSCAGKVVSGEIDQSDQSFLDDDQVAAGWVLTCHAYPKSDVVIETHKEDDL 138
>Os03g0685000 Similar to Ferredoxin
Length = 183
Score = 83.6 bits (205), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 52/86 (60%)
Query: 63 GVEHEFEAPEDTYILEAAETAGVELPFSCRAGSCSTCAGKMSSGEVDQSEGSFLDENQMG 122
GV HEF P+D YIL AE + LPF+CR G C++CA ++ SG++ Q E +
Sbjct: 71 GVVHEFVVPQDQYILHTAEAQDITLPFACRHGCCTSCAVRIKSGQIRQPEALGISAELKD 130
Query: 123 EGYVLTCISYPKADCVIHTHKEEELY 148
+GY L C+ +P +D + T E+E+Y
Sbjct: 131 KGYALLCVGFPTSDVEVETQDEDEVY 156
>AK110576
Length = 131
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 56/95 (58%), Gaps = 2/95 (2%)
Query: 54 HKVKLIGPDGVEHEFEAPEDTYILEAAETAGVELPFSCRAGSCSTCAGKMSSGEVDQSEG 113
HKV+ I G + + PE ILE A G++LP C+ G C TC K+ SGEVDQS G
Sbjct: 33 HKVE-IDHQGKTYVLDVPEGRSILEVALDKGIDLPHDCKLGVCMTCPAKLMSGEVDQS-G 90
Query: 114 SFLDENQMGEGYVLTCISYPKADCVIHTHKEEELY 148
S L ++ +GY L C++ P++D I T E+EL
Sbjct: 91 SMLSDDVAEKGYALLCMALPQSDVKIMTVSEDELL 125
>Os03g0659200 Similar to Ferredoxin
Length = 147
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 68 FEAPEDTYILEAAETAGVELPFSCRAGSCSTCAGKMSSGEVDQSEGSFLDENQMGEGYVL 127
E E IL A G+++P C+ G C TC ++ +GEVDQS+G L ++ + +GY L
Sbjct: 59 VEVEEGETILSRALDEGIDVPHDCKLGVCMTCPARLVAGEVDQSDG-MLSDDVVAQGYAL 117
Query: 128 TCISYPKADCVIHTHKEEELY 148
C SYP++DC I E+EL
Sbjct: 118 LCASYPRSDCTIRVIPEDELL 138
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.130 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,368,817
Number of extensions: 211745
Number of successful extensions: 611
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 607
Number of HSP's successfully gapped: 10
Length of query: 148
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 56
Effective length of database: 12,232,113
Effective search space: 684998328
Effective search space used: 684998328
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 151 (62.8 bits)