Os03g0835900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ferredoxin III, chloroplast precursor (Fd III).
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Os03g0835900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ferredoxin III, chloroplast precursor (Fd III).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.14 | 0.266 | 12.7 | 1.56 | 0.0153 | 0.284 | 1.08 | 0.317 | 0.41 | 16.2 | 999.5 | 21220 | -- | -- |
| 32.29 | 0.265 | 12.7 | 1.54 | 0.032 | 0.324 | 1.03 | -- | 0.396 | 16 | 999.7 | 26139 | -- | -- |
| 35.25 | 0.277 | 12.7 | 1.6 | 0.0217 | 0.275 | -- | 0.32 | 0.412 | 14.4 | 999.6 | 22061 | -- | -- |
| 35.01 | 0.276 | 12.6 | 1.55 | 0.0884 | 0.329 | -- | -- | 0.392 | 10.9 | 999.6 | 25681 | -- | -- |
| 35.36 | 0.277 | 12.7 | 1.57 | -- | 0.275 | -- | 0.33 | 0.414 | -- | 999.6 | 22455 | -- | -- |
| 37.39 | 0.287 | 12.6 | 1.49 | 0.00698 | -- | 1.07 | -- | 0.473 | 16.2 | -- | -- | -- | -- |
| 40.16 | 0.297 | 12.6 | 1.5 | 0.0826 | -- | -- | -- | 0.479 | 10.6 | -- | -- | -- | -- |
| 35.49 | 0.277 | 12.7 | 1.55 | -- | 0.329 | -- | -- | 0.39 | -- | 999.6 | 25680 | -- | -- |
| 52.24 | 0.337 | 12.7 | -- | 0.0676 | 0.942 | -- | -- | 0.0567 | 14 | 993.8 | 47520 | -- | -- |
| 40.58 | 0.298 | 12.6 | 1.5 | -- | -- | -- | -- | 0.479 | -- | -- | -- | -- | -- |
| 99.65 | 0.467 | 12.7 | -- | 0.0778 | -- | -- | -- | 0.312 | 9.16 | -- | -- | -- | -- |
| 50.04 | 0.329 | 12.7 | -- | -- | 0.983 | -- | -- | 0.0589 | -- | 993.7 | 45377 | -- | -- |
| 100 | 0.467 | 12.7 | -- | -- | -- | -- | -- | 0.312 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.93 | radiation | 20 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 6 | 31.16 | radiation | 30 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 8 | 31.18 | wind | 1 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 11 | 31.20 | wind | 1 | 43200 | < th | dose dependent | rect. | 8 | 4 |
| 29 | 31.32 | radiation | 20 | 43200 | < th | dose independent | rect. | 10 | 2 |
| 62 | 31.36 | radiation | 1 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 121 | 31.46 | humidity | 90 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 150 | 31.49 | radiation | 20 | 43200 | > th | dose independent | sin | 7 | NA |
| 211 | 31.51 | wind | 1 | 43200 | < th | dose dependent | rect. | 5 | 21 |
| 327 | 31.55 | radiation | 40 | 43200 | > th | dose independent | rect. | 13 | 23 |
| 334 | 31.56 | radiation | 30 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 407 | 31.58 | radiation | 40 | 43200 | > th | dose independent | sin | 23 | NA |
| 442 | 31.59 | radiation | 40 | 43200 | > th | dose independent | no | NA | NA |
| 820 | 31.63 | radiation | 30 | 43200 | < th | dose independent | rect. | 13 | 1 |