Os08g0104600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ferredoxin I, chloroplast precursor (Anti-disease protein 1).
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Os08g0104600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ferredoxin I, chloroplast precursor (Anti-disease protein 1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50.44 | 0.334 | 16.5 | -0.807 | 0.978 | 0.649 | 1.47 | 0.483 | -0.676 | 5.2 | 20.2 | 10 | -- | -- |
| 50.69 | 0.334 | 16.5 | -0.884 | 0.974 | 0.66 | 1.36 | -- | -0.697 | 5.22 | 20.27 | 18 | -- | -- |
| 55.14 | 0.349 | 16.5 | -0.933 | 0.978 | 0.672 | -- | -0.307 | -0.716 | 5.07 | 20.2 | 10 | -- | -- |
| 55.23 | 0.346 | 16.5 | -0.882 | 0.979 | 0.649 | -- | -- | -0.702 | 5.09 | 20.2 | 7 | -- | -- |
| 91.78 | 0.446 | 16.5 | -0.772 | -- | -0.356 | -- | -0.91 | -0.549 | -- | 15.26 | 381 | -- | -- |
| 57.25 | 0.355 | 16.5 | -0.757 | 0.802 | -- | 1.32 | -- | -0.586 | 5.95 | -- | -- | -- | -- |
| 61.5 | 0.367 | 16.5 | -0.747 | 0.81 | -- | -- | -- | -0.592 | 5.82 | -- | -- | -- | -- |
| 90.33 | 0.443 | 16.5 | -0.894 | -- | 0.55 | -- | -- | -0.673 | -- | 13.43 | 1324 | -- | -- |
| 74.23 | 0.403 | 16.5 | -- | 0.884 | 0.346 | -- | -- | -0.559 | 5.43 | 20.77 | 36 | -- | -- |
| 95.5 | 0.457 | 16.5 | -0.722 | -- | -- | -- | -- | -0.573 | -- | -- | -- | -- | -- |
| 76.2 | 0.408 | 16.5 | -- | 0.798 | -- | -- | -- | -0.509 | 5.87 | -- | -- | -- | -- |
| 101.12 | 0.468 | 16.5 | -- | -- | -0.528 | -- | -- | -0.389 | -- | 24.4 | 360 | -- | -- |
| 109.26 | 0.488 | 16.5 | -- | -- | -- | -- | -- | -0.493 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 41.59 | humidity | 60 | 270 | > th | dose independent | rect. | 12 | 5 |
| 2 | 41.95 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 14 | 4 |
| 5 | 42.20 | humidity | 60 | 270 | > th | dose independent | rect. | 12 | 18 |
| 6 | 42.30 | temperature | 30 | 30 | < th | dose independent | rect. | 14 | 4 |
| 7 | 42.39 | temperature | 30 | 270 | < th | dose independent | rect. | 12 | 5 |
| 11 | 42.74 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 14 | 4 |
| 13 | 42.79 | temperature | 30 | 30 | < th | dose independent | rect. | 14 | 18 |
| 15 | 42.84 | temperature | 30 | 270 | < th | dose independent | rect. | 12 | 18 |
| 25 | 43.45 | humidity | 60 | 270 | > th | dose independent | rect. | 13 | 2 |
| 46 | 43.97 | temperature | 30 | 270 | < th | dose independent | rect. | 14 | 1 |
| 48 | 44.07 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 12 | 5 |
| 71 | 44.69 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 13 | 2 |
| 76 | 44.79 | humidity | 60 | 10 | > th | dose independent | rect. | 14 | 4 |
| 77 | 44.81 | humidity | 50 | 270 | > th | dose dependent | rect. | 12 | 5 |
| 82 | 44.88 | humidity | 50 | 10 | > th | dose dependent | rect. | 14 | 18 |
| 94 | 45.00 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 16 |
| 97 | 45.05 | humidity | 50 | 10 | > th | dose dependent | rect. | 14 | 4 |
| 144 | 45.79 | temperature | 30 | 270 | < th | dose independent | rect. | 1 | 16 |
| 173 | 46.06 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 17 |
| 179 | 46.11 | temperature | 15 | 30 | > th | dose dependent | rect. | 17 | 21 |
| 248 | 46.68 | temperature | 30 | 270 | < th | dose independent | rect. | 23 | 19 |
| 251 | 46.69 | humidity | 50 | 10 | > th | dose dependent | rect. | 12 | 22 |
| 259 | 46.74 | temperature | 10 | 270 | > th | dose dependent | rect. | 15 | 21 |
| 303 | 46.98 | temperature | 30 | 10 | < th | dose dependent | rect. | 14 | 4 |
| 316 | 47.05 | temperature | 30 | 10 | < th | dose dependent | rect. | 14 | 18 |
| 361 | 47.28 | temperature | 30 | 10 | < th | dose dependent | rect. | 14 | 6 |
| 369 | 47.33 | temperature | 30 | 90 | < th | dose dependent | rect. | 14 | 5 |
| 458 | 47.71 | temperature | 10 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 507 | 47.85 | radiation | 10 | 43200 | < th | dose dependent | rect. | 19 | 9 |
| 576 | 48.07 | temperature | 10 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 579 | 48.08 | radiation | 1 | 270 | > th | dose independent | rect. | 16 | 21 |
| 581 | 48.09 | radiation | 1 | 270 | > th | dose independent | rect. | 17 | 19 |
| 637 | 48.27 | humidity | 60 | 270 | > th | dose independent | rect. | 1 | 16 |
| 742 | 48.53 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 9 |
| 792 | 48.63 | radiation | 10 | 270 | < th | dose dependent | rect. | 21 | 21 |
| 828 | 48.74 | temperature | 25 | 270 | > th | dose dependent | sin | 11 | NA |
| 843 | 48.77 | humidity | 60 | 270 | > th | dose independent | rect. | 23 | 19 |