BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0104600 Os08g0104600|AK120393
         (139 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G60950.1  | chr1:22444565-22445011 FORWARD LENGTH=149          119   5e-28
AT1G10960.1  | chr1:3664445-3664891 FORWARD LENGTH=149            100   3e-22
AT2G27510.1  | chr2:11758281-11758748 REVERSE LENGTH=156           92   9e-20
AT5G10000.1  | chr5:3126709-3127155 FORWARD LENGTH=149             69   7e-13

>AT1G60950.1 | chr1:22444565-22445011 FORWARD LENGTH=149
          Length = 148

 Score =  119 bits (298), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 65/150 (43%), Positives = 84/150 (56%), Gaps = 13/150 (8%)

Query: 1   MAATALSSQVRLPMSLRVATAPAPARVSVLPASNK-----------LGDRLRMQATYNVK 49
           MA+TALSS +     +R   +PAP  +  LP++N             G R+   ATY VK
Sbjct: 1   MASTALSSAIVGTSFIR--RSPAPISLRSLPSANTQSLFGLKSGTARGGRVTAMATYKVK 58

Query: 50  LITPDGEVELQVPDDVYILDQAEEEGIDLPYXXXXXXXXXXXXKVVSGEIXXXXXXXXXX 109
            ITP+GE+E++  DDVY+LD AEE GIDLPY            KVVSG +          
Sbjct: 59  FITPEGELEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDD 118

Query: 110 XXVAAGWVLTCHAYPKSDVVIETHKEDDLI 139
             +  G+VLTC AYP SDV IETHKE+D++
Sbjct: 119 EQIGEGFVLTCAAYPTSDVTIETHKEEDIV 148



>AT1G10960.1 | chr1:3664445-3664891 FORWARD LENGTH=149
          Length = 148

 Score =  100 bits (249), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 63/148 (42%), Positives = 82/148 (55%), Gaps = 9/148 (6%)

Query: 1   MAATALSSQV---------RLPMSLRVATAPAPARVSVLPASNKLGDRLRMQATYNVKLI 51
           MA+TALSS +         + P+SLR         +  L +S   G R+   ATY VK I
Sbjct: 1   MASTALSSAIVSTSFLRRQQTPISLRSLPFANTQSLFGLKSSTARGGRVTAMATYKVKFI 60

Query: 52  TPDGEVELQVPDDVYILDQAEEEGIDLPYXXXXXXXXXXXXKVVSGEIXXXXXXXXXXXX 111
           TP+GE E++  +DVY+LD AEE G+DLPY            KVVSG I            
Sbjct: 61  TPEGEQEVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQ 120

Query: 112 VAAGWVLTCHAYPKSDVVIETHKEDDLI 139
           ++ G+VLTC AYP SDVVIETHKE+ ++
Sbjct: 121 MSEGYVLTCVAYPTSDVVIETHKEEAIM 148



>AT2G27510.1 | chr2:11758281-11758748 REVERSE LENGTH=156
          Length = 155

 Score = 92.0 bits (227), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 52/126 (41%), Positives = 65/126 (51%), Gaps = 2/126 (1%)

Query: 15  SLRVATAPAPARVSVLPASNKLGDRLRMQATYNVKLITPDG-EVELQVPDDVYILDQAEE 73
           +L V +    +R   L  S   G    M A Y VKL+ PDG E E +V DD YILD AEE
Sbjct: 31  NLSVGSTKRVSRSFGLKCSANSGG-ATMSAVYKVKLLGPDGQEDEFEVQDDQYILDAAEE 89

Query: 74  EGIDLPYXXXXXXXXXXXXKVVSGEIXXXXXXXXXXXXVAAGWVLTCHAYPKSDVVIETH 133
            G+DLPY            ++VSG +            +  G+VLTC AYP+SD VI TH
Sbjct: 90  AGVDLPYSCRAGACSTCAGQIVSGNVDQSDGSFLEDSHLEKGYVLTCVAYPQSDCVIHTH 149

Query: 134 KEDDLI 139
           KE +L 
Sbjct: 150 KETELF 155



>AT5G10000.1 | chr5:3126709-3127155 FORWARD LENGTH=149
          Length = 148

 Score = 69.3 bits (168), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 72/140 (51%), Gaps = 12/140 (8%)

Query: 10  VRLPMSLRVATAPAPARVSV---------LPASNKLGDRLRMQATYNVKLITPDGE-VEL 59
           +++P+  R++  P+ A+++          L +S     ++  + +  VKLI+P+GE  E+
Sbjct: 11  IKIPVISRIS--PSQAQLTTRLNNTTYFGLSSSRGNFGKVFAKESRKVKLISPEGEEQEI 68

Query: 60  QVPDDVYILDQAEEEGIDLPYXXXXXXXXXXXXKVVSGEIXXXXXXXXXXXXVAAGWVLT 119
           +  +D  IL+ AE  G++LPY            K+VSG++            +  G++LT
Sbjct: 69  EGNEDCCILESAENAGLELPYSCRSGTCGTCCGKLVSGKVDQSLGSFLEEEQIQKGYILT 128

Query: 120 CHAYPKSDVVIETHKEDDLI 139
           C A P  D V+ THK+ DLI
Sbjct: 129 CIALPLEDCVVYTHKQSDLI 148



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.132    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,258,206
Number of extensions: 66672
Number of successful extensions: 165
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 4
Length of query: 139
Length of database: 11,106,569
Length adjustment: 88
Effective length of query: 51
Effective length of database: 8,693,961
Effective search space: 443392011
Effective search space used: 443392011
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 106 (45.4 bits)