Os05g0443500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ferredoxin VI, chloroplast precursor (Fd VI).
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Os05g0443500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ferredoxin VI, chloroplast precursor (Fd VI).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48.73 | 0.328 | 10.4 | -1.06 | 0.913 | 1.22 | -0.599 | -2.08 | -0.0691 | 8.4 | 25.61 | 1323 | -- | -- |
| 50.09 | 0.33 | 10.4 | -0.543 | 0.937 | 1.11 | -0.493 | -- | -0.0485 | 8.58 | 23.51 | 1231 | -- | -- |
| 49.44 | 0.327 | 10.4 | -1.06 | 0.929 | 1.25 | -- | -2.09 | -0.0578 | 8.58 | 25.74 | 1266 | -- | -- |
| 50.43 | 0.331 | 10.3 | -0.529 | 0.957 | 1.07 | -- | -- | 0.0703 | 8.65 | 25.8 | 1212 | -- | -- |
| 95.33 | 0.455 | 10.4 | -0.954 | -- | 1.09 | -- | -1.43 | -0.0595 | -- | 24.82 | 1386 | -- | -- |
| 91.61 | 0.449 | 10.3 | -0.179 | 0.898 | -- | -0.662 | -- | 0.149 | 7.81 | -- | -- | -- | -- |
| 92.87 | 0.451 | 10.3 | -0.196 | 0.897 | -- | -- | -- | 0.15 | 7.85 | -- | -- | -- | -- |
| 95.71 | 0.456 | 10.4 | -0.573 | -- | 1.06 | -- | -- | -0.0953 | -- | 22.93 | 1399 | -- | -- |
| 57.02 | 0.352 | 10.3 | -- | 0.969 | 0.965 | -- | -- | 0.16 | 8.57 | 26.35 | 1184 | -- | -- |
| 136.56 | 0.546 | 10.3 | -0.186 | -- | -- | -- | -- | 0.162 | -- | -- | -- | -- | -- |
| 93.88 | 0.453 | 10.3 | -- | 0.896 | -- | -- | -- | 0.171 | 7.87 | -- | -- | -- | -- |
| 102.8 | 0.472 | 10.3 | -- | -- | 0.837 | -- | -- | 0.171 | -- | 26.3 | 1376 | -- | -- |
| 137.47 | 0.547 | 10.3 | -- | -- | -- | -- | -- | 0.182 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 48.61 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 2 | 48.69 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 8 |
| 29 | 49.22 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 13 |
| 30 | 49.23 | temperature | 25 | 1440 | > th | dose dependent | sin | 20 | NA |
| 81 | 49.47 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 22 |
| 198 | 49.98 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 261 | 50.26 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 263 | 50.28 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 2 |
| 265 | 50.28 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 589 | 52.03 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 3 |
| 645 | 52.23 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 7 |
| 650 | 52.24 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 22 |
| 676 | 52.32 | temperature | 30 | 1440 | < th | dose independent | rect. | 1 | 15 |
| 679 | 52.32 | temperature | 30 | 1440 | < th | dose independent | rect. | 21 | 19 |
| 686 | 52.33 | temperature | 30 | 1440 | < th | dose independent | rect. | 3 | 13 |
| 718 | 52.44 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 22 |
| 736 | 52.47 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 3 |
| 818 | 52.70 | temperature | 30 | 1440 | > th | dose independent | rect. | 15 | 1 |
| 843 | 52.80 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 7 |
| 940 | 53.06 | wind | 5 | 43200 | > th | dose independent | rect. | 4 | 13 |
| 945 | 53.08 | wind | 5 | 43200 | < th | dose independent | rect. | 3 | 14 |
| 946 | 53.08 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 951 | 53.10 | temperature | 30 | 1440 | < th | dose independent | sin | 0 | NA |
| 980 | 53.13 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 11 |