BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0443500 Os05g0443500|AK103416
(148 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G27510.1 | chr2:11758281-11758748 REVERSE LENGTH=156 157 2e-39
AT1G60950.1 | chr1:22444565-22445011 FORWARD LENGTH=149 135 6e-33
AT5G10000.1 | chr5:3126709-3127155 FORWARD LENGTH=149 129 5e-31
AT1G10960.1 | chr1:3664445-3664891 FORWARD LENGTH=149 128 9e-31
AT4G14890.1 | chr4:8520887-8521351 FORWARD LENGTH=155 75 1e-14
AT1G32550.2 | chr1:11771969-11774117 REVERSE LENGTH=195 70 4e-13
>AT2G27510.1 | chr2:11758281-11758748 REVERSE LENGTH=156
Length = 155
Score = 157 bits (398), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 72/122 (59%), Positives = 97/122 (79%), Gaps = 1/122 (0%)
Query: 28 IGYAKQTLNMSGLRIS-NKFRVSATAVHKVKLIGPDGVEHEFEAPEDTYILEAAETAGVE 86
+G K+ GL+ S N + +AV+KVKL+GPDG E EFE +D YIL+AAE AGV+
Sbjct: 34 VGSTKRVSRSFGLKCSANSGGATMSAVYKVKLLGPDGQEDEFEVQDDQYILDAAEEAGVD 93
Query: 87 LPFSCRAGSCSTCAGKMSSGEVDQSEGSFLDENQMGEGYVLTCISYPKADCVIHTHKEEE 146
LP+SCRAG+CSTCAG++ SG VDQS+GSFL+++ + +GYVLTC++YP++DCVIHTHKE E
Sbjct: 94 LPYSCRAGACSTCAGQIVSGNVDQSDGSFLEDSHLEKGYVLTCVAYPQSDCVIHTHKETE 153
Query: 147 LY 148
L+
Sbjct: 154 LF 155
>AT1G60950.1 | chr1:22444565-22445011 FORWARD LENGTH=149
Length = 148
Score = 135 bits (341), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 62/101 (61%), Positives = 81/101 (80%), Gaps = 1/101 (0%)
Query: 47 RVSATAVHKVKLIGPDGVEHEFEAPEDTYILEAAETAGVELPFSCRAGSCSTCAGKMSSG 106
RV+A A +KVK I P+G E E E +D Y+L+AAE AG++LP+SCRAGSCS+CAGK+ SG
Sbjct: 48 RVTAMATYKVKFITPEG-ELEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSG 106
Query: 107 EVDQSEGSFLDENQMGEGYVLTCISYPKADCVIHTHKEEEL 147
VDQS+ SFLD+ Q+GEG+VLTC +YP +D I THKEE++
Sbjct: 107 SVDQSDQSFLDDEQIGEGFVLTCAAYPTSDVTIETHKEEDI 147
>AT5G10000.1 | chr5:3126709-3127155 FORWARD LENGTH=149
Length = 148
Score = 129 bits (325), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 60/104 (57%), Positives = 78/104 (75%)
Query: 44 NKFRVSATAVHKVKLIGPDGVEHEFEAPEDTYILEAAETAGVELPFSCRAGSCSTCAGKM 103
N +V A KVKLI P+G E E E ED ILE+AE AG+ELP+SCR+G+C TC GK+
Sbjct: 44 NFGKVFAKESRKVKLISPEGEEQEIEGNEDCCILESAENAGLELPYSCRSGTCGTCCGKL 103
Query: 104 SSGEVDQSEGSFLDENQMGEGYVLTCISYPKADCVIHTHKEEEL 147
SG+VDQS GSFL+E Q+ +GY+LTCI+ P DCV++THK+ +L
Sbjct: 104 VSGKVDQSLGSFLEEEQIQKGYILTCIALPLEDCVVYTHKQSDL 147
>AT1G10960.1 | chr1:3664445-3664891 FORWARD LENGTH=149
Length = 148
Score = 128 bits (322), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 69/144 (47%), Positives = 95/144 (65%), Gaps = 14/144 (9%)
Query: 17 AIAPATKSPSFIGYAKQTLNMSGLRISNKF-------------RVSATAVHKVKLIGPDG 63
A++ A S SF+ + +++ L +N RV+A A +KVK I P+G
Sbjct: 5 ALSSAIVSTSFLRRQQTPISLRSLPFANTQSLFGLKSSTARGGRVTAMATYKVKFITPEG 64
Query: 64 VEHEFEAPEDTYILEAAETAGVELPFSCRAGSCSTCAGKMSSGEVDQSEGSFLDENQMGE 123
+ E ED Y+L+AAE AG++LP+SCRAGSCS+CAGK+ SG +DQS+ SFLD+ QM E
Sbjct: 65 EQEV-ECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMSE 123
Query: 124 GYVLTCISYPKADCVIHTHKEEEL 147
GYVLTC++YP +D VI THKEE +
Sbjct: 124 GYVLTCVAYPTSDVVIETHKEEAI 147
>AT4G14890.1 | chr4:8520887-8521351 FORWARD LENGTH=155
Length = 154
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 66/137 (48%), Gaps = 18/137 (13%)
Query: 11 FPKPGAAIAPATKSPSFIGYAKQTLNMSGLRISNKFRVSATAVHKVKLIGPDGVEHEFEA 70
FP A ++ T +F+ +G I+ ++V ++ DG E E
Sbjct: 26 FPLRNATLSTTTNRRNFL--------TTGRIIARAYKV---------VVEHDGKTTELEV 68
Query: 71 PEDTYILEAAETAGVELPFSCRAGSCSTCAGKMSSGEVDQSEGSFLDENQMGEGYVLTCI 130
D IL A +G+++P+ C G C TC K+ +G VDQS G L ++ + GY L C
Sbjct: 69 EPDETILSKALDSGLDVPYDCNLGVCMTCPAKLVTGTVDQS-GGMLSDDVVERGYTLLCA 127
Query: 131 SYPKADCVIHTHKEEEL 147
SYP +DC I EEEL
Sbjct: 128 SYPTSDCHIKMIPEEEL 144
>AT1G32550.2 | chr1:11771969-11774117 REVERSE LENGTH=195
Length = 194
Score = 70.1 bits (170), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 56/102 (54%), Gaps = 19/102 (18%)
Query: 63 GVEHEFEAPEDTYILEAAETAGVELPFSCRAGSCSTCAGKMSSGEVDQSEG--------- 113
GV HEFE D YIL +AE+ + LPF+CR G C++CA ++ SGE+ Q +
Sbjct: 69 GVVHEFE---DQYILHSAESQNISLPFACRHGCCTSCAVRVKSGELRQPQALGISAELKS 125
Query: 114 ---SFLDENQMGE----GYVLTCISYPKADCVIHTHKEEELY 148
S LD Q + GY L C+ +P +D + T E+E+Y
Sbjct: 126 QRISSLDLIQCQKTYLTGYALLCVGFPTSDLEVETQDEDEVY 167
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.130 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,377,135
Number of extensions: 130394
Number of successful extensions: 304
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 300
Number of HSP's successfully gapped: 6
Length of query: 148
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 59
Effective length of database: 8,666,545
Effective search space: 511326155
Effective search space used: 511326155
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 107 (45.8 bits)