Os03g0659200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ferredoxin.
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Os03g0659200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ferredoxin.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 165.62 | 0.605 | 11 | 0.867 | 2.52 | 2.17 | -1.76 | -1.61 | -0.56 | 23.1 | 23.05 | 406 | 23.7 | -- |
| 166.65 | 0.601 | 11 | 1.08 | 2.52 | 2.11 | -1.58 | -- | -0.498 | 23.1 | 23.11 | 401 | 23.8 | -- |
| 177.61 | 0.621 | 11 | 1.08 | 2.56 | 2.15 | -- | -0.203 | -0.548 | 23.1 | 22.89 | 389 | 23.6 | -- |
| 177.29 | 0.62 | 11 | 1.15 | 2.57 | 2.13 | -- | -- | -0.5 | 23.1 | 23.02 | 376 | 23.4 | -- |
| 421.2 | 0.961 | 10.8 | 2.13 | -- | -1.82 | -- | 3.68 | 0.204 | -- | 22.89 | 389 | 23.6 | -- |
| 225.49 | 0.704 | 10.9 | 1.43 | 2.03 | -- | -1.9 | -- | -0.188 | 22.3 | -- | -- | -- | -- |
| 240.04 | 0.726 | 10.9 | 1.5 | 2.04 | -- | -- | -- | -0.183 | 22.3 | -- | -- | -- | -- |
| 251.73 | 0.742 | 10.9 | 1.57 | -- | -2.14 | -- | -- | -0.138 | -- | -37.64 | 3 | 19.9 | -- |
| 210.77 | 0.676 | 11 | -- | 2.74 | 2.5 | -- | -- | -0.585 | 23.3 | 22.6 | 377 | 23.1 | -- |
| 492.89 | 1.04 | 10.9 | 1.54 | -- | -- | -- | -- | -0.177 | -- | -- | -- | -- | -- |
| 299.7 | 0.81 | 11 | -- | 2.05 | -- | -- | -- | -0.35 | 22.4 | -- | -- | -- | -- |
| 301.31 | 0.808 | 10.9 | -- | -- | -2.05 | -- | -- | -0.344 | -- | -1122 | 841 | 2.66 | -- |
| 555.13 | 1.1 | 10.9 | -- | -- | -- | -- | -- | -0.347 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 169.66 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 17 |
| 6 | 171.20 | temperature | 25 | 270 | > th | dose independent | rect. | 23 | 17 |
| 14 | 172.49 | temperature | 25 | 270 | > th | dose dependent | rect. | 8 | 7 |
| 16 | 172.54 | temperature | 25 | 270 | < th | dose independent | rect. | 5 | 6 |
| 20 | 172.91 | temperature | 25 | 270 | > th | dose dependent | sin | 4 | NA |
| 25 | 173.61 | temperature | 10 | 270 | > th | dose dependent | rect. | 23 | 17 |
| 45 | 174.76 | temperature | 30 | 90 | < th | dose independent | rect. | 6 | 17 |
| 91 | 177.56 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 8 |
| 101 | 178.06 | temperature | 25 | 90 | > th | dose dependent | sin | 23 | NA |
| 103 | 178.08 | temperature | 30 | 270 | < th | dose independent | rect. | 3 | 20 |
| 130 | 178.84 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 8 |
| 143 | 179.34 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 6 | 17 |
| 253 | 182.15 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 16 |
| 259 | 182.22 | temperature | 25 | 10 | > th | dose dependent | rect. | 10 | 20 |
| 264 | 182.29 | temperature | 25 | 90 | > th | dose dependent | rect. | 9 | 20 |
| 333 | 183.34 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 6 | 17 |
| 388 | 183.95 | temperature | 30 | 270 | < th | dose dependent | sin | 1 | NA |
| 468 | 184.84 | humidity | 80 | 43200 | > th | dose dependent | rect. | 21 | 2 |
| 469 | 184.85 | temperature | 30 | 10 | < th | dose independent | rect. | 6 | 8 |
| 471 | 184.86 | temperature | 25 | 270 | > th | dose independent | sin | 2 | NA |
| 479 | 184.97 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 495 | 185.14 | humidity | 80 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 502 | 185.21 | temperature | 25 | 270 | < th | dose independent | sin | 2 | NA |
| 551 | 185.80 | humidity | 80 | 43200 | > th | dose dependent | rect. | 16 | 11 |
| 557 | 185.88 | humidity | 80 | 43200 | > th | dose dependent | rect. | 19 | 6 |
| 558 | 185.88 | humidity | 80 | 43200 | > th | dose dependent | rect. | 14 | 15 |
| 573 | 185.97 | humidity | 80 | 43200 | > th | dose dependent | rect. | 15 | 13 |
| 605 | 186.14 | humidity | 80 | 43200 | > th | dose dependent | sin | 14 | NA |
| 642 | 186.44 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 12 | 18 |
| 649 | 186.52 | temperature | 20 | 90 | > th | dose independent | rect. | 5 | 7 |
| 705 | 186.97 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 12 | 17 |
| 708 | 187.00 | temperature | 25 | 720 | > th | dose independent | rect. | 23 | 12 |
| 715 | 187.08 | humidity | 70 | 43200 | > th | dose dependent | rect. | 10 | 17 |
| 721 | 187.13 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 6 | 18 |
| 738 | 187.26 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 759 | 187.42 | temperature | 25 | 90 | > th | dose dependent | rect. | 3 | 23 |
| 797 | 187.68 | radiation | 40 | 270 | < th | dose independent | rect. | 2 | 23 |
| 806 | 187.72 | radiation | 40 | 270 | > th | dose dependent | rect. | 14 | 21 |
| 826 | 187.90 | radiation | 40 | 270 | > th | dose dependent | sin | 12 | NA |
| 853 | 188.04 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 10 | 7 |
| 917 | 188.40 | radiation | 40 | 270 | < th | dose independent | rect. | 3 | 10 |
| 923 | 188.46 | temperature | 15 | 270 | > th | dose independent | rect. | 3 | 9 |