Os03g0685000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ferredoxin.
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Os03g0685000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ferredoxin.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 54.12 | 0.346 | 13.1 | -1.26 | 0.739 | 0.49 | 0.00678 | -0.141 | -0.976 | 22 | 25.36 | 329 | -- | -- |
| 54.17 | 0.343 | 13.1 | -1.22 | 0.742 | 0.482 | -0.00351 | -- | -0.961 | 22 | 25.32 | 328 | -- | -- |
| 54.12 | 0.343 | 13.1 | -1.26 | 0.74 | 0.489 | -- | -0.141 | -0.976 | 22 | 25.35 | 328 | -- | -- |
| 54.17 | 0.343 | 13.1 | -1.22 | 0.742 | 0.482 | -- | -- | -0.962 | 22 | 25.32 | 328 | -- | -- |
| 77.21 | 0.409 | 13.1 | -1.43 | -- | 0.851 | -- | -0.379 | -1.04 | -- | 25.92 | 592 | -- | -- |
| 64.07 | 0.375 | 13 | -1.08 | 0.933 | -- | -0.0513 | -- | -0.753 | 20.6 | -- | -- | -- | -- |
| 64.08 | 0.375 | 13 | -1.08 | 0.933 | -- | -- | -- | -0.753 | 20.6 | -- | -- | -- | -- |
| 77.52 | 0.41 | 13.1 | -1.33 | -- | 0.835 | -- | -- | -1.01 | -- | 25.93 | 592 | -- | -- |
| 91.82 | 0.446 | 13 | -- | 0.762 | 0.37 | -- | -- | -0.779 | 21.7 | 25.5 | 334 | -- | -- |
| 113.15 | 0.497 | 13 | -1.08 | -- | -- | -- | -- | -0.762 | -- | -- | -- | -- | -- |
| 94.89 | 0.456 | 13 | -- | 0.937 | -- | -- | -- | -0.633 | 20.6 | -- | -- | -- | -- |
| 121.69 | 0.514 | 13 | -- | -- | 0.633 | -- | -- | -0.826 | -- | 25.71 | 532 | -- | -- |
| 144.14 | 0.56 | 13 | -- | -- | -- | -- | -- | -0.641 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 43.33 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 7 | 22 |
| 2 | 43.62 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 13 | 45.92 | wind | 9.0 | 90 | < th | dose independent | rect. | 7 | 22 |
| 22 | 46.81 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 5 | 2 |
| 23 | 46.90 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 5 | 2 |
| 26 | 46.99 | temperature | 20.0 | 90 | > th | dose independent | rect. | 5 | 2 |
| 27 | 47.02 | humidity | 70.0 | 90 | > th | dose independent | rect. | 5 | 2 |
| 28 | 47.05 | radiation | 10.0 | 90 | < th | dose independent | rect. | 5 | 2 |
| 30 | 47.10 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 5 | 2 |
| 32 | 47.18 | wind | 7.0 | 90 | < th | dose independent | rect. | 5 | 2 |
| 34 | 47.18 | temperature | 10.0 | 90 | > th | dose independent | rect. | 5 | 2 |
| 36 | 47.18 | temperature | 30.0 | 90 | < th | dose independent | rect. | 5 | 2 |
| 37 | 47.18 | humidity | 50.0 | 90 | > th | dose independent | rect. | 5 | 2 |
| 40 | 47.18 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 5 | 2 |
| 42 | 47.18 | temperature | 10.0 | 90 | > th | dose independent | rect. | 7 | 22 |
| 44 | 47.20 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 5 | 2 |
| 45 | 47.20 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 5 | 2 |
| 48 | 47.28 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 7 | 22 |
| 49 | 47.28 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 7 | 22 |
| 50 | 47.29 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 5 | 2 |
| 52 | 47.33 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 7 | 23 |
| 59 | 47.59 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 5 | 2 |
| 62 | 47.60 | wind | 9.0 | 90 | < th | dose dependent | rect. | 5 | 2 |
| 70 | 47.85 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 5 | 18 |
| 82 | 48.29 | wind | 1.0 | 90 | > th | dose independent | rect. | 5 | 2 |
| 83 | 48.44 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 7 | 10 |
| 84 | 48.47 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 8 |
| 90 | 48.55 | radiation | 1.0 | 90 | > th | dose independent | rect. | 18 | 13 |
| 94 | 48.70 | humidity | 80.0 | 90 | > th | dose independent | rect. | 5 | 4 |
| 100 | 48.79 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 5 | 18 |
| 101 | 48.81 | radiation | 1.0 | 90 | > th | dose independent | rect. | 5 | 2 |
| 118 | 48.91 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 8 | 21 |
| 121 | 48.97 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 8 | 9 |
| 151 | 49.24 | radiation | 30.0 | 10 | < th | dose independent | rect. | 5 | 3 |
| 154 | 49.26 | humidity | 80.0 | 90 | > th | dose independent | rect. | 5 | 6 |
| 158 | 49.28 | humidity | 70.0 | 10 | > th | dose independent | rect. | 5 | 3 |
| 161 | 49.29 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 3 | 10 |
| 165 | 49.34 | radiation | 10.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 184 | 49.52 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 3 | 6 |
| 204 | 49.69 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 5 | 6 |
| 206 | 49.70 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 7 | 22 |
| 235 | 49.89 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 5 | 3 |
| 250 | 49.98 | wind | 5.0 | 10 | < th | dose independent | rect. | 5 | 3 |
| 255 | 50.02 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 256 | 50.02 | wind | 9.0 | 90 | < th | dose dependent | rect. | 7 | 22 |
| 259 | 50.03 | temperature | 10.0 | 10 | > th | dose independent | rect. | 5 | 3 |
| 261 | 50.03 | temperature | 30.0 | 10 | < th | dose independent | rect. | 5 | 3 |
| 262 | 50.03 | humidity | 50.0 | 10 | > th | dose independent | rect. | 5 | 3 |
| 265 | 50.03 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 5 | 3 |
| 266 | 50.03 | temperature | 10.0 | 10 | > th | dose independent | rect. | 8 | 21 |
| 286 | 50.07 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 4 | 15 |
| 289 | 50.09 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 5 | 6 |
| 295 | 50.12 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 5 | 3 |
| 298 | 50.12 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 5 | 3 |
| 345 | 50.35 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 4 | 17 |
| 356 | 50.43 | wind | 1.0 | 10 | > th | dose independent | rect. | 5 | 3 |
| 366 | 50.50 | radiation | 10.0 | 90 | < th | dose independent | rect. | 5 | 18 |
| 400 | 50.66 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 2 | 19 |
| 415 | 50.69 | temperature | 25.0 | 270 | > th | dose dependent | sin | 8 | NA |
| 441 | 50.75 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 445 | 50.77 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 10 |
| 447 | 50.77 | wind | 1.0 | 90 | > th | dose independent | rect. | 7 | 22 |
| 448 | 50.77 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 5 | 2 |
| 461 | 50.78 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 6 | 1 |
| 505 | 50.92 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 3 | 4 |
| 516 | 50.95 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 8 | 21 |
| 530 | 50.99 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 6 | 1 |
| 535 | 51.00 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 2 | 18 |
| 538 | 51.01 | radiation | 10.0 | 270 | < th | dose independent | rect. | 16 | 15 |
| 542 | 51.02 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 4 | 19 |
| 585 | 51.11 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 5 | 9 |
| 681 | 51.25 | temperature | 25.0 | 270 | > th | dose independent | rect. | 22 | 16 |
| 684 | 51.25 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 5 | 8 |
| 712 | 51.31 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 2 | 17 |
| 735 | 51.36 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 741 | 51.37 | temperature | 25.0 | 270 | < th | dose independent | rect. | 2 | 17 |
| 764 | 51.42 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 5 | 18 |
| 773 | 51.44 | radiation | 1.0 | 10 | > th | dose independent | rect. | 5 | 2 |
| 796 | 51.46 | wind | 9.0 | 90 | < th | dose dependent | rect. | 8 | 20 |
| 832 | 51.54 | radiation | 40.0 | 270 | < th | dose independent | rect. | 10 | 21 |
| 838 | 51.55 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 20 | 17 |
| 853 | 51.59 | wind | 1.0 | 10 | > th | dose independent | rect. | 6 | 1 |
| 910 | 51.63 | wind | 7.0 | 270 | < th | dose independent | rect. | 7 | 10 |
| 912 | 51.63 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 6 | 1 |
| 917 | 51.63 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 16 | 15 |
| 945 | 51.68 | radiation | 10.0 | 10 | < th | dose independent | rect. | 5 | 9 |
| 989 | 51.74 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 22 | 15 |