BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0685000 Os03g0685000|AK059896
(183 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G32550.2 | chr1:11771969-11774117 REVERSE LENGTH=195 200 3e-52
AT2G27510.1 | chr2:11758281-11758748 REVERSE LENGTH=156 66 1e-11
AT1G10960.1 | chr1:3664445-3664891 FORWARD LENGTH=149 60 5e-10
AT1G60950.1 | chr1:22444565-22445011 FORWARD LENGTH=149 57 6e-09
AT4G14890.1 | chr4:8520887-8521351 FORWARD LENGTH=155 51 4e-07
AT5G10000.1 | chr5:3126709-3127155 FORWARD LENGTH=149 49 2e-06
>AT1G32550.2 | chr1:11771969-11774117 REVERSE LENGTH=195
Length = 194
Score = 200 bits (509), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 97/142 (68%), Positives = 109/142 (76%), Gaps = 19/142 (13%)
Query: 58 APTHKVTVHDRQRGVVHEFVVPQDQYILHTAEAQDITLPFACRHGCCTSCAVRIKSGQIR 117
P+HKVTVHDRQRGVVHEF +DQYILH+AE+Q+I+LPFACRHGCCTSCAVR+KSG++R
Sbjct: 56 VPSHKVTVHDRQRGVVHEF---EDQYILHSAESQNISLPFACRHGCCTSCAVRVKSGELR 112
Query: 118 QPEALGISAELKDK----------------GYALLCVGFPTSXXXXXXXXXXXXYWLQFG 161
QP+ALGISAELK + GYALLCVGFPTS YWLQFG
Sbjct: 113 QPQALGISAELKSQRISSLDLIQCQKTYLTGYALLCVGFPTSDLEVETQDEDEVYWLQFG 172
Query: 162 RYFARGPVERDDYALELAMGDE 183
RYFARGP+ERDDYALELAMGDE
Sbjct: 173 RYFARGPIERDDYALELAMGDE 194
>AT2G27510.1 | chr2:11758281-11758748 REVERSE LENGTH=156
Length = 155
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 41/69 (59%)
Query: 75 EFVVPQDQYILHTAEAQDITLPFACRHGCCTSCAVRIKSGQIRQPEALGISAELKDKGYA 134
EF V DQYIL AE + LP++CR G C++CA +I SG + Q + + +KGY
Sbjct: 74 EFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDGSFLEDSHLEKGYV 133
Query: 135 LLCVGFPTS 143
L CV +P S
Sbjct: 134 LTCVAYPQS 142
>AT1G10960.1 | chr1:3664445-3664891 FORWARD LENGTH=149
Length = 148
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 38/63 (60%)
Query: 81 DQYILHTAEAQDITLPFACRHGCCTSCAVRIKSGQIRQPEALGISAELKDKGYALLCVGF 140
D Y+L AE + LP++CR G C+SCA ++ SG I Q + + E +GY L CV +
Sbjct: 73 DVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMSEGYVLTCVAY 132
Query: 141 PTS 143
PTS
Sbjct: 133 PTS 135
>AT1G60950.1 | chr1:22444565-22445011 FORWARD LENGTH=149
Length = 148
Score = 56.6 bits (135), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%)
Query: 80 QDQYILHTAEAQDITLPFACRHGCCTSCAVRIKSGQIRQPEALGISAELKDKGYALLCVG 139
D Y+L AE I LP++CR G C+SCA ++ SG + Q + + E +G+ L C
Sbjct: 72 DDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDEQIGEGFVLTCAA 131
Query: 140 FPTS 143
+PTS
Sbjct: 132 YPTS 135
>AT4G14890.1 | chr4:8520887-8521351 FORWARD LENGTH=155
Length = 154
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 61 HKVTV-HDRQRGVVHEFVVPQDQYILHTAEAQDITLPFACRHGCCTSCAVRIKSGQIRQP 119
+KV V HD G E V D+ IL A + +P+ C G C +C ++ +G + Q
Sbjct: 53 YKVVVEHD---GKTTELEVEPDETILSKALDSGLDVPYDCNLGVCMTCPAKLVTGTVDQS 109
Query: 120 EALGISAELKDKGYALLCVGFPTS 143
+ +S ++ ++GY LLC +PTS
Sbjct: 110 GGM-LSDDVVERGYTLLCASYPTS 132
>AT5G10000.1 | chr5:3126709-3127155 FORWARD LENGTH=149
Length = 148
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%)
Query: 70 RGVVHEFVVPQDQYILHTAEAQDITLPFACRHGCCTSCAVRIKSGQIRQPEALGISAELK 129
G E +D IL +AE + LP++CR G C +C ++ SG++ Q + E
Sbjct: 62 EGEEQEIEGNEDCCILESAENAGLELPYSCRSGTCGTCCGKLVSGKVDQSLGSFLEEEQI 121
Query: 130 DKGYALLCVGFP 141
KGY L C+ P
Sbjct: 122 QKGYILTCIALP 133
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.135 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,202,737
Number of extensions: 106179
Number of successful extensions: 196
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 193
Number of HSP's successfully gapped: 6
Length of query: 183
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 91
Effective length of database: 8,584,297
Effective search space: 781171027
Effective search space used: 781171027
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 108 (46.2 bits)