BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0436400 Os05g0436400|AK060776
(283 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0436400 Peptidase A22, presenilin signal peptide famil... 506 e-143
Os02g0117400 Peptidase A22B, minor histocompatibility antig... 494 e-140
Os10g0393100 Peptidase A22B, minor histocompatibility antig... 104 7e-23
Os11g0433200 Similar to Growth-on protein GRO10 99 3e-21
Os01g0914700 Peptidase A22B, minor histocompatibility antig... 98 8e-21
Os06g0730900 Peptidase A22B, minor histocompatibility antig... 97 1e-20
Os02g0823000 Peptidase A22B, minor histocompatibility antig... 94 1e-19
>Os05g0436400 Peptidase A22, presenilin signal peptide family protein
Length = 283
Score = 506 bits (1302), Expect = e-143, Method: Compositional matrix adjust.
Identities = 255/283 (90%), Positives = 255/283 (90%)
Query: 1 MRFPLVGSAMXXXXXXXXXXXXXDLVNTVLTAYFFILGIAALCATLLPSIKRFLPKEWND 60
MRFPLVGSAM DLVNTVLTAYFFILGIAALCATLLPSIKRFLPKEWND
Sbjct: 1 MRFPLVGSAMLLSLFLLFKFLSKDLVNTVLTAYFFILGIAALCATLLPSIKRFLPKEWND 60
Query: 61 NAIVWRAPLFHSLSVEFTRSQVVASIPGFFFCIWYAAKKHWLANNVLGISFCIQGIEMLS 120
NAIVWRAPLFHSLSVEFTRSQVVASIPGFFFCIWYAAKKHWLANNVLGISFCIQGIEMLS
Sbjct: 61 NAIVWRAPLFHSLSVEFTRSQVVASIPGFFFCIWYAAKKHWLANNVLGISFCIQGIEMLS 120
Query: 121 LGSFKTGAILLSGLFFYDIFWVFFTPVMVSVAKSFDAPIKLLFPTGDAARPFSMLGLGDI 180
LGSFKTGAILLSGLFFYDIFWVFFTPVMVSVAKSFDAPIKLLFPTGDAARPFSMLGLGDI
Sbjct: 121 LGSFKTGAILLSGLFFYDIFWVFFTPVMVSVAKSFDAPIKLLFPTGDAARPFSMLGLGDI 180
Query: 181 VIPGIFVALALRFDVSRGIKNRYFNSAFLGYTVGLTVTIIVMNWFQAAQPALLYIVPGVI 240
VIPGIFVALALRFDVSRGIKNRYFNSAFLGYTVGLTVTIIVMNWFQAAQPALLYIVPGVI
Sbjct: 181 VIPGIFVALALRFDVSRGIKNRYFNSAFLGYTVGLTVTIIVMNWFQAAQPALLYIVPGVI 240
Query: 241 GFVAVHCLWNGEVKPLLXXXXXXXXXXXXXXXDTDSKQNKKKE 283
GFVAVHCLWNGEVKPLL DTDSKQNKKKE
Sbjct: 241 GFVAVHCLWNGEVKPLLEYNESKAEEEEACEEDTDSKQNKKKE 283
>Os02g0117400 Peptidase A22B, minor histocompatibility antigen H13 family protein
Length = 343
Score = 494 bits (1271), Expect = e-140, Method: Compositional matrix adjust.
Identities = 249/283 (87%), Positives = 252/283 (89%)
Query: 1 MRFPLVGSAMXXXXXXXXXXXXXDLVNTVLTAYFFILGIAALCATLLPSIKRFLPKEWND 60
MRFPLVGSAM DLVN VLTAYFFILGIAALCATLLPSIKRFLPKEWND
Sbjct: 61 MRFPLVGSAMLLSLFLLFKFLSKDLVNAVLTAYFFILGIAALCATLLPSIKRFLPKEWND 120
Query: 61 NAIVWRAPLFHSLSVEFTRSQVVASIPGFFFCIWYAAKKHWLANNVLGISFCIQGIEMLS 120
NAIVW AP FHSLSVEFT+SQVVASIPGFFFCIWYAAKKHWLANNVLGISFCIQGIEMLS
Sbjct: 121 NAIVWCAPFFHSLSVEFTKSQVVASIPGFFFCIWYAAKKHWLANNVLGISFCIQGIEMLS 180
Query: 121 LGSFKTGAILLSGLFFYDIFWVFFTPVMVSVAKSFDAPIKLLFPTGDAARPFSMLGLGDI 180
LGSFKTGAILL+GLFFYDIFWVFFTPVMVSVAKSFDAPIKLLFPTGDAARPFSMLGLGDI
Sbjct: 181 LGSFKTGAILLAGLFFYDIFWVFFTPVMVSVAKSFDAPIKLLFPTGDAARPFSMLGLGDI 240
Query: 181 VIPGIFVALALRFDVSRGIKNRYFNSAFLGYTVGLTVTIIVMNWFQAAQPALLYIVPGVI 240
VIPGIFVALALRFDVSRGIKNRYFNSAFLGYTVGLTVTIIVMNWFQAAQPALLYIVPGVI
Sbjct: 241 VIPGIFVALALRFDVSRGIKNRYFNSAFLGYTVGLTVTIIVMNWFQAAQPALLYIVPGVI 300
Query: 241 GFVAVHCLWNGEVKPLLXXXXXXXXXXXXXXXDTDSKQNKKKE 283
GFVAVHCLWNGEVKPLL DTDSKQNKK+E
Sbjct: 301 GFVAVHCLWNGEVKPLLEYNESKAEEEDAVEEDTDSKQNKKEE 343
>Os10g0393100 Peptidase A22B, minor histocompatibility antigen H13 family protein
Length = 371
Score = 104 bits (259), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 94/195 (48%), Gaps = 52/195 (26%)
Query: 100 HWLANNVLGISFCIQGIEMLSLGSFKTGAILLSGLFFYDIFWVFFTP------VMVSVA- 152
HWL NN+LGIS CI + + L + K A+LL LF YD+FWVFF+ VMVSVA
Sbjct: 148 HWLLNNLLGISICIAFVSHVRLPNIKICALLLVCLFVYDVFWVFFSERFFGANVMVSVAT 207
Query: 153 -----------------------KSFDAPIKLLFPT--------GDAARPFSMLGLGDIV 181
K + P+KL+FP G + + MLGLGD+
Sbjct: 208 QKASNPVHTVANKLSLPGLQLITKKLELPVKLVFPRSLMGGLAPGSSPGDYMMLGLGDMA 267
Query: 182 IPGIFVALALRFDVSRGIKN-------------RYFNSAFLGYTVGLTVTIIVMNWFQAA 228
IPG+ +AL L FD R IK+ +Y A GY VGL + Q+
Sbjct: 268 IPGMLLALVLSFD-HRKIKDMSVSQDMPPSKQRKYVWYALTGYGVGLVTALAAGILSQSP 326
Query: 229 QPALLYIVPGVIGFV 243
QPALLY+VP +G V
Sbjct: 327 QPALLYLVPSTLGPV 341
>Os11g0433200 Similar to Growth-on protein GRO10
Length = 361
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 100/184 (54%), Gaps = 18/184 (9%)
Query: 91 FCIWYAAKKH----WLANNVLGISFCIQGIEMLSLGSFKTGAILLSGLFFYDIFWVFFTP 146
F I +A +H W+ ++LGI I ++M L + + + LLS F YD+FWVF +P
Sbjct: 163 FAILWAVYRHASFAWIGQDILGICLMITVLQMARLPNIRVASALLSAAFVYDVFWVFISP 222
Query: 147 ------VMVSVAKSFDA----PIKLLFPT-GDAARPFSMLGLGDIVIPGIFVALALRFDV 195
VM++VA+ ++ P+ L P D + M+G GDI+ PG+ VA + RFD
Sbjct: 223 LIFHESVMIAVARGDNSGEAIPMLLRIPRFFDPWGGYDMIGFGDIIFPGLLVAFSYRFDR 282
Query: 196 S--RGIKNRYFNSAFLGYTVGLTVTIIVMNWFQA-AQPALLYIVPGVIGFVAVHCLWNGE 252
+ RG+ N YF +GY VGL +T + + QPALLY+VP +G + + + GE
Sbjct: 283 ASKRGLFNGYFLWLTVGYAVGLFLTYLALFLMDGHGQPALLYLVPCTLGLIVILGWFRGE 342
Query: 253 VKPL 256
+ L
Sbjct: 343 LHDL 346
>Os01g0914700 Peptidase A22B, minor histocompatibility antigen H13 family protein
Length = 523
Score = 97.8 bits (242), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 94/183 (51%), Gaps = 16/183 (8%)
Query: 90 FFCIWYAAKKH---WLANNVLGISFCIQGIEMLSLGSFKTGAILLSGLFFYDIFWVFFTP 146
F +W + W+ +++GI I ++++ L + K LL F YDIFWVF +P
Sbjct: 336 FVVVWAVHQNSPFAWVGQDLMGICMMILVLQVVHLPNIKVATALLVSAFMYDIFWVFISP 395
Query: 147 ------VMVSVAKSFDA----PIKLLFPTG-DAARPFSMLGLGDIVIPGIFVALALRFDV 195
VM++VA+ D P+ L P D + M+G GDI+ PG+ VA + R+D
Sbjct: 396 FIFKKSVMITVARGSDEGPSLPMVLKMPKEFDTWNGYDMIGFGDILFPGLLVAFSFRYDR 455
Query: 196 SRG--IKNRYFNSAFLGYTVGLTVTIIVMNWFQAAQPALLYIVPGVIGFVAVHCLWNGEV 253
+ G + + YF +GY GL+ T + + ++ QPALLY+VP +G + GE+
Sbjct: 456 ANGKDLTDGYFLCLMIGYAFGLSCTYVGLYLMKSGQPALLYLVPSTLGTIVTLGAKRGEL 515
Query: 254 KPL 256
L
Sbjct: 516 SQL 518
>Os06g0730900 Peptidase A22B, minor histocompatibility antigen H13 family protein
Length = 542
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 95/170 (55%), Gaps = 19/170 (11%)
Query: 91 FCIWYAAKKH----WLANNVLGISFCIQGIEMLSLGSFKTGAILLSGLFFYDIFWVFFTP 146
F + +A +H W+ ++LGI+ I I+++ + + K G++LLS FFYDIFWVF +
Sbjct: 331 FAVLWAVHRHFTYAWIGQDILGIALIITVIQIVRVPNLKVGSVLLSCAFFYDIFWVFVSK 390
Query: 147 ------VMVSVAKSFDA-----PIKLLFPTG-DAARPFSMLGLGDIVIPGIFVALALRFD 194
VM+ VA+ P+ L P D +S++G GDI++PG+ VA ALR+D
Sbjct: 391 RWFHESVMIVVARGDKTDEDGVPMLLKIPRMFDPWGGYSIIGFGDILLPGLLVAFALRYD 450
Query: 195 --VSRGIKNRYFNSAFLGYTVGLTVTIIVMNWFQA-AQPALLYIVPGVIG 241
+ ++ YF + + Y GL +T + +N QPALLYIVP +G
Sbjct: 451 WAAKKSLQTGYFLWSMVAYGSGLLITYVALNLMDGHGQPALLYIVPFTLG 500
>Os02g0823000 Peptidase A22B, minor histocompatibility antigen H13 family protein
Length = 545
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 99/185 (53%), Gaps = 18/185 (9%)
Query: 90 FFCIWYAAKKH---WLANNVLGISFCIQGIEMLSLGSFKTGAILLSGLFFYDIFWVFFTP 146
F IW ++ W+ ++LGI+ + I+++ + + K G++LLS F YDIFWVF +
Sbjct: 332 FAVIWAVYRRMTYAWIGQDILGIALIVTVIQIVRIPNLKVGSVLLSCSFLYDIFWVFISK 391
Query: 147 ------VMVSVAKSFDA-----PIKLLFPTG-DAARPFSMLGLGDIVIPGIFVALALRFD 194
VM+ VA+ P+ L P D FS++G GDI++PG+ +A ALR+D
Sbjct: 392 MWFHESVMIVVARGDKTDEDGVPMLLKIPRMFDPWGGFSIIGFGDILLPGLLIAFALRYD 451
Query: 195 --VSRGIKNRYFNSAFLGYTVGLTVTIIVMNWFQA-AQPALLYIVPGVIGFVAVHCLWNG 251
+ +++ YF + + Y GL +T + +N QPALLYIVP +G G
Sbjct: 452 WAAKKTLQSGYFLWSMVAYGSGLMITYVALNLMDGHGQPALLYIVPFTLGTFIALGRKRG 511
Query: 252 EVKPL 256
E++ L
Sbjct: 512 ELRNL 516
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.330 0.143 0.459
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,016,934
Number of extensions: 293365
Number of successful extensions: 744
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 730
Number of HSP's successfully gapped: 7
Length of query: 283
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 183
Effective length of database: 11,814,401
Effective search space: 2162035383
Effective search space used: 2162035383
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 155 (64.3 bits)