Os02g0117400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase A22B, minor histocompatibility antigen H13 family protein.
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Os02g0117400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase A22B, minor histocompatibility antigen H13 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.4 | 0.28 | 11.1 | -0.302 | 0.692 | 0.509 | 0.333 | -0.159 | 0.111 | 20.4 | 20.6 | 1569 | -- | -- |
| 35.44 | 0.277 | 11.1 | -0.271 | 0.689 | 0.514 | 0.342 | -- | 0.115 | 20.4 | 20.7 | 1515 | -- | -- |
| 35.74 | 0.278 | 11.1 | -0.306 | 0.692 | 0.514 | -- | -0.142 | 0.113 | 20.4 | 20.6 | 1570 | -- | -- |
| 35.79 | 0.279 | 11.1 | -0.284 | 0.691 | 0.534 | -- | -- | 0.116 | 20.3 | 20.66 | 1568 | -- | -- |
| 49.85 | 0.329 | 11.1 | -0.166 | -- | 0.596 | -- | 0.138 | 0.0651 | -- | 25.22 | 596 | -- | -- |
| 41.64 | 0.303 | 11.1 | -0.05 | 0.689 | -- | 0.397 | -- | 0.24 | 20.4 | -- | -- | -- | -- |
| 42.13 | 0.304 | 11.1 | -0.0619 | 0.689 | -- | -- | -- | 0.241 | 20.4 | -- | -- | -- | -- |
| 49.44 | 0.327 | 11.1 | -0.224 | -- | 0.603 | -- | -- | -0.00407 | -- | 25.3 | 592 | -- | -- |
| 37.55 | 0.285 | 11.1 | -- | 0.686 | 0.38 | -- | -- | 0.162 | 20.2 | 21.3 | 1320 | -- | -- |
| 68.55 | 0.387 | 11.1 | -0.0658 | -- | -- | -- | -- | 0.233 | -- | -- | -- | -- | -- |
| 42.23 | 0.304 | 11.1 | -- | 0.689 | -- | -- | -- | 0.248 | 20.4 | -- | -- | -- | -- |
| 50.92 | 0.332 | 11.1 | -- | -- | 0.576 | -- | -- | 0.0407 | -- | 25.29 | 581 | -- | -- |
| 68.66 | 0.387 | 11.1 | -- | -- | -- | -- | -- | 0.241 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.83 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 2 | 33.94 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 9 |
| 3 | 33.94 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 9 |
| 4 | 33.95 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 23 | 34.12 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 6 |
| 25 | 34.13 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 4 |
| 28 | 34.14 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 35 | 34.16 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 4 |
| 41 | 34.17 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 99 | 34.41 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 102 | 34.44 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 103 | 34.44 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 3 |
| 119 | 34.51 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 123 | 34.52 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 130 | 34.54 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 152 | 34.60 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 235 | 34.93 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 14 |
| 270 | 35.01 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 19 |
| 289 | 35.06 | temperature | 15 | 1440 | > th | dose dependent | rect. | 24 | 5 |
| 298 | 35.07 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 2 |
| 325 | 35.11 | temperature | 30 | 1440 | < th | dose dependent | rect. | 24 | 5 |
| 388 | 35.18 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 9 |
| 422 | 35.22 | temperature | 20 | 90 | > th | dose independent | rect. | 12 | 16 |
| 472 | 35.26 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 18 |
| 476 | 35.27 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 561 | 35.33 | temperature | 20 | 90 | < th | dose independent | rect. | 18 | 12 |
| 623 | 35.38 | temperature | 20 | 90 | < th | dose independent | sin | 12 | NA |
| 727 | 35.46 | temperature | 25 | 1440 | < th | dose dependent | sin | 11 | NA |
| 752 | 35.48 | temperature | 20 | 90 | < th | dose independent | rect. | 15 | 15 |
| 783 | 35.51 | temperature | 20 | 90 | > th | dose independent | rect. | 19 | 9 |
| 820 | 35.53 | temperature | 30 | 270 | < th | dose dependent | sin | 11 | NA |
| 856 | 35.56 | temperature | 20 | 10 | > th | dose independent | rect. | 12 | 17 |
| 917 | 35.60 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 22 |
| 987 | 35.66 | temperature | 20 | 10 | > th | dose independent | rect. | 19 | 10 |