BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0351200 Os05g0351200|Os05g0351200
(269 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0351200 Pathogenesis-related transcriptional factor an... 93 2e-19
Os04g0550200 Pathogenesis-related transcriptional factor an... 72 6e-13
Os02g0657000 AP2 domain-containing protein Rap211 70 1e-12
Os04g0549700 Similar to Dehydration responsive element bind... 70 2e-12
Os02g0656600 Similar to Dehydration responsive element bind... 69 4e-12
Os10g0560700 Similar to Transcriptional factor TINY 67 1e-11
Os02g0231000 66 3e-11
Os06g0553700 65 4e-11
>Os05g0351200 Pathogenesis-related transcriptional factor and ERF domain
containing protein
Length = 269
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 53/104 (50%)
Query: 1 MEPSDDACTVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFRYRGVRQRSWGK 60
MEPSDDACTV FRYRGVRQRSWGK
Sbjct: 1 MEPSDDACTVAAPAAETAASSSGAGGGGGGGRTKKKAAGKGGPENGKFRYRGVRQRSWGK 60
Query: 61 WVAEIREPRKRSRKWLGTFATAEXXXXXXXXXXXXXXGPRAHLN 104
WVAEIREPRKRSRKWLGTFATAE GPRAHLN
Sbjct: 61 WVAEIREPRKRSRKWLGTFATAEDAARAYDRAALLLYGPRAHLN 104
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/29 (100%), Positives = 29/29 (100%)
Query: 241 WGFHGGDEEDYAAALLWSEPDPWFDLFLK 269
WGFHGGDEEDYAAALLWSEPDPWFDLFLK
Sbjct: 241 WGFHGGDEEDYAAALLWSEPDPWFDLFLK 269
>Os04g0550200 Pathogenesis-related transcriptional factor and ERF domain
containing protein
Length = 217
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/55 (63%), Positives = 37/55 (67%)
Query: 50 YRGVRQRSWGKWVAEIREPRKRSRKWLGTFATAEXXXXXXXXXXXXXXGPRAHLN 104
YRGVR RSWGKWV+EIREPRK+SR WLGTFATAE G AHLN
Sbjct: 47 YRGVRMRSWGKWVSEIREPRKKSRIWLGTFATAEMAARAHDVAALAIKGRTAHLN 101
>Os02g0657000 AP2 domain-containing protein Rap211
Length = 225
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/55 (63%), Positives = 37/55 (67%)
Query: 50 YRGVRQRSWGKWVAEIREPRKRSRKWLGTFATAEXXXXXXXXXXXXXXGPRAHLN 104
YRGVR RSWGKWV+EIREPRK+SR WLGTFATAE G AHLN
Sbjct: 50 YRGVRMRSWGKWVSEIREPRKKSRIWLGTFATAEMAARAHDVAALAIKGRAAHLN 104
>Os04g0549700 Similar to Dehydration responsive element binding protein 1F
(DREB1F protein)
Length = 284
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/55 (61%), Positives = 37/55 (67%)
Query: 50 YRGVRQRSWGKWVAEIREPRKRSRKWLGTFATAEXXXXXXXXXXXXXXGPRAHLN 104
YRGVR+RSWGKWV+EIREPRK+SR WLGTF TAE G AHLN
Sbjct: 118 YRGVRRRSWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDVAALAIKGRNAHLN 172
>Os02g0656600 Similar to Dehydration responsive element binding protein 2B
(DREB2B protein)
Length = 287
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/55 (61%), Positives = 37/55 (67%)
Query: 50 YRGVRQRSWGKWVAEIREPRKRSRKWLGTFATAEXXXXXXXXXXXXXXGPRAHLN 104
YRGVR+RSWGKWV+EIREPRK+SR WLGTF TAE G AHLN
Sbjct: 99 YRGVRRRSWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDVAALAIKGRAAHLN 153
>Os10g0560700 Similar to Transcriptional factor TINY
Length = 289
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 36/55 (65%)
Query: 50 YRGVRQRSWGKWVAEIREPRKRSRKWLGTFATAEXXXXXXXXXXXXXXGPRAHLN 104
YRGVR R+WGKWV+EIREPRK+SR WLGTF TA+ G AHLN
Sbjct: 96 YRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTADMAARAHDVAALAIKGRAAHLN 150
>Os02g0231000
Length = 247
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 35/55 (63%)
Query: 50 YRGVRQRSWGKWVAEIREPRKRSRKWLGTFATAEXXXXXXXXXXXXXXGPRAHLN 104
YRGVR R+WGKWV+EIREPRK+SR WLGTF T E GP A LN
Sbjct: 46 YRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDAAALVVKGPAAVLN 100
>Os06g0553700
Length = 263
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 35/55 (63%)
Query: 50 YRGVRQRSWGKWVAEIREPRKRSRKWLGTFATAEXXXXXXXXXXXXXXGPRAHLN 104
YRGVR R+WGKWV+EIREPRK+SR WLGTF T E GP A LN
Sbjct: 51 YRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDAAALVVKGPAAVLN 105
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.139 0.496
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,709,567
Number of extensions: 73395
Number of successful extensions: 328
Number of sequences better than 1.0e-10: 27
Number of HSP's gapped: 343
Number of HSP's successfully gapped: 28
Length of query: 269
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 170
Effective length of database: 11,866,615
Effective search space: 2017324550
Effective search space used: 2017324550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 155 (64.3 bits)