Os05g0351200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Pathogenesis-related transcriptional factor and ERF domain containing protein.
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Os05g0351200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Pathogenesis-related transcriptional factor and ERF domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 169.43 | 0.612 | 4.06 | 0.472 | 0.532 | -1.01 | 0.192 | -1.31 | -0.382 | 12.1 | 21.71 | 867 | -- | -- |
| 173.87 | 0.614 | 4.02 | 0.781 | 0.544 | -0.911 | 0.539 | -- | -0.307 | 12.1 | 22 | 854 | -- | -- |
| 169.55 | 0.606 | 4.06 | 0.456 | 0.532 | -1.01 | -- | -1.39 | -0.387 | 12 | 21.71 | 869 | -- | -- |
| 175.04 | 0.616 | 4.02 | 0.805 | 0.54 | -0.914 | -- | -- | -0.292 | 12 | 22.03 | 850 | -- | -- |
| 186.49 | 0.636 | 4.07 | 0.457 | -- | -1.15 | -- | -1.45 | -0.361 | -- | 21.8 | 865 | -- | -- |
| 208.32 | 0.677 | 4.08 | 0.478 | 0.707 | -- | 0.475 | -- | -0.587 | 11.7 | -- | -- | -- | -- |
| 209.27 | 0.677 | 4.08 | 0.496 | 0.706 | -- | -- | -- | -0.586 | 11.6 | -- | -- | -- | -- |
| 192.5 | 0.646 | 4.02 | 0.852 | -- | -1.05 | -- | -- | -0.256 | -- | 22.1 | 883 | -- | -- |
| 190.66 | 0.643 | 4.05 | -- | 0.568 | -0.746 | -- | -- | -0.428 | 12 | 22.1 | 764 | -- | -- |
| 240.55 | 0.725 | 4.1 | 0.477 | -- | -- | -- | -- | -0.594 | -- | -- | -- | -- | -- |
| 215.77 | 0.687 | 4.09 | -- | 0.7 | -- | -- | -- | -0.641 | 11.6 | -- | -- | -- | -- |
| 209.68 | 0.674 | 4.05 | -- | -- | -0.86 | -- | -- | -0.395 | -- | 22.2 | 816 | -- | -- |
| 246.55 | 0.733 | 4.11 | -- | -- | -- | -- | -- | -0.647 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 160.79 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 3 | 162.43 | wind | 3.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 6 | 162.74 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 8 | 163.65 | wind | 3.0 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 25 | 166.51 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 28 | 166.75 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 29 | 166.81 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 34 | 167.42 | wind | 3.0 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 44 | 168.26 | wind | 3.0 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 69 | 169.97 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 21 | 11 |
| 78 | 170.37 | wind | 3.0 | 14400 | < th | dose independent | rect. | 1 | 7 |
| 80 | 170.57 | wind | 3.0 | 14400 | > th | dose independent | rect. | 1 | 7 |
| 83 | 170.66 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 22 | 4 |
| 93 | 170.87 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 1 | 7 |
| 95 | 170.95 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 3 | 10 |
| 96 | 170.96 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 3 | 8 |
| 97 | 170.98 | wind | 5.0 | 4320 | > th | dose independent | rect. | 20 | 6 |
| 109 | 171.26 | wind | 3.0 | 14400 | < th | dose independent | rect. | 23 | 9 |
| 113 | 171.33 | wind | 3.0 | 14400 | > th | dose independent | rect. | 23 | 9 |
| 114 | 171.41 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 21 | 2 |
| 118 | 171.48 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 131 | 171.68 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 21 | 2 |
| 132 | 171.68 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 21 | 2 |
| 158 | 172.14 | wind | 5.0 | 4320 | < th | dose independent | rect. | 20 | 6 |
| 166 | 172.30 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 174 | 172.39 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 23 | 4 |
| 180 | 172.52 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 182 | 172.59 | humidity | 90.0 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 186 | 172.61 | temperature | 25.0 | 720 | < th | dose dependent | sin | 11 | NA |
| 195 | 172.64 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 7 |
| 218 | 172.93 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 22 | 10 |
| 219 | 172.94 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 17 | 14 |
| 226 | 173.00 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 9 |
| 231 | 173.04 | wind | 1.0 | 14400 | < th | dose independent | rect. | 4 | 9 |
| 243 | 173.12 | wind | 1.0 | 14400 | > th | dose independent | rect. | 4 | 9 |
| 263 | 173.31 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 18 | 15 |
| 280 | 173.45 | wind | 3.0 | 14400 | < th | dose dependent | sin | 8 | NA |
| 291 | 173.53 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 1 | 7 |
| 295 | 173.57 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 303 | 173.59 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 12 | 2 |
| 319 | 173.67 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 19 | 10 |
| 324 | 173.69 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 10 | 21 |
| 341 | 173.78 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 21 | 4 |
| 349 | 173.82 | wind | 1.0 | 14400 | < th | dose independent | rect. | 20 | 17 |
| 410 | 174.09 | wind | 1.0 | 14400 | > th | dose independent | rect. | 21 | 16 |
| 431 | 174.20 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 433 | 174.20 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 12 | 1 |
| 445 | 174.22 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 468 | 174.32 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 492 | 174.38 | wind | 1.0 | 14400 | < th | dose independent | rect. | 1 | 12 |
| 506 | 174.43 | temperature | 20.0 | 270 | > th | dose independent | rect. | 2 | 14 |
| 540 | 174.55 | temperature | 25.0 | 720 | < th | dose dependent | no | NA | NA |
| 545 | 174.57 | wind | 1.0 | 14400 | > th | dose independent | rect. | 21 | 14 |
| 573 | 174.67 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 21 | 23 |
| 582 | 174.71 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 634 | 174.91 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 635 | 174.91 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 640 | 174.92 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 659 | 174.99 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 1 | 2 |
| 687 | 175.08 | wind | 1.0 | 14400 | > th | dose independent | rect. | 1 | 12 |
| 727 | 175.21 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 10 | 1 |
| 740 | 175.25 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 754 | 175.31 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 23 | 6 |
| 764 | 175.35 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 765 | 175.35 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 7 | 1 |
| 778 | 175.39 | humidity | 90.0 | 4320 | > th | dose independent | rect. | 7 | 3 |
| 893 | 175.78 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 906 | 175.80 | wind | 1.0 | 14400 | < th | dose independent | sin | 6 | NA |
| 934 | 175.88 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 12 | 2 |
| 964 | 175.96 | wind | 1.0 | 14400 | > th | dose independent | sin | 6 | NA |