BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0298700 Os05g0298700|AK108917
(265 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0298700 Similar to Xylan endohydrolase isoenzyme X-I (... 357 7e-99
Os05g0319900 Similar to (1,4)-beta-xylan endohydrolase, iso... 267 6e-72
Os01g0134900 Similar to (1,4)-beta-xylan endohydrolase, iso... 248 3e-66
Os01g0134800 Similar to (1,4)-beta-xylan endohydrolase, iso... 216 1e-56
Os03g0672900 Similar to RXF12 protein (Xylan endohydrolase)... 171 5e-43
Os07g0456700 Similar to (1,4)-beta-xylan endohydrolase (EC ... 169 2e-42
Os05g0304000 153 1e-37
Os03g0243700 Glycoside hydrolase, family 10 protein 83 2e-16
Os05g0304900 Glycoside hydrolase, family 10 protein 73 2e-13
Os03g0201400 Glycoside hydrolase, family 10 protein 66 2e-11
Os03g0201901 Glycoside hydrolase, family 10 protein 66 3e-11
>Os05g0298700 Similar to Xylan endohydrolase isoenzyme X-I (EC 3.2.1.8)
Length = 265
Score = 357 bits (915), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 188/265 (70%), Positives = 188/265 (70%)
Query: 1 TIKRTVHXXXXXXXXXXXXXXXXXXXXXXXXXHVPCRRVGQXXXXXXXXXXXXXXXXXXX 60
TIKRTVH HVPCRRVGQ
Sbjct: 1 TIKRTVHRRVAPRRRGGRAAARGSGGRARATGHVPCRRVGQRAGPGRREAPCGARRPPRG 60
Query: 61 XXXXXXXXXLFVNDYNVLRGNDPNATPEKYVELVDALRRXXXXXXXXXXXXHMDSPVAGQ 120
LFVNDYNVLRGNDPNATPEKYVELVDALRR HMDSPVAGQ
Sbjct: 61 RRRRRRRARLFVNDYNVLRGNDPNATPEKYVELVDALRRGGAAVGGIGVQGHMDSPVAGQ 120
Query: 121 VIRXXXXXXXXXXXXPIWITELDVSEPDVGLRADDLEVVLREAYAHPAVEGVVLWGFMEG 180
VIR PIWITELDVSEPDVGLRADDLEVVLREAYAHPAVEGVVLWGFMEG
Sbjct: 121 VIRAALDKLAAAGGAPIWITELDVSEPDVGLRADDLEVVLREAYAHPAVEGVVLWGFMEG 180
Query: 181 QMWRRDAYLVDADGTVNEAGQRFLQLQREWRSDARGIVDGDGRFKFRGFHGTYVAQVTTA 240
QMWRRDAYLVDADGTVNEAGQRFLQLQREWRSDARGIVDGDGRFKFRGFHGTYVAQVTTA
Sbjct: 181 QMWRRDAYLVDADGTVNEAGQRFLQLQREWRSDARGIVDGDGRFKFRGFHGTYVAQVTTA 240
Query: 241 TGKMLKTFTVEKGDNSLELDLDIEI 265
TGKMLKTFTVEKGDNSLELDLDIEI
Sbjct: 241 TGKMLKTFTVEKGDNSLELDLDIEI 265
>Os05g0319900 Similar to (1,4)-beta-xylan endohydrolase, isoenzyme X-II (EC
3.2.1.8) (Fragment)
Length = 581
Score = 267 bits (683), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 135/194 (69%), Positives = 152/194 (78%), Gaps = 1/194 (0%)
Query: 70 LFVNDYNVLRGNDPNATPEKYVELVDALRRXXXXXXXXXXXXHMDSPVAGQVIRXXXXXX 129
LFVNDYNV NDPNATPEKY+EL+DALRR H+ +P +G+VI
Sbjct: 389 LFVNDYNVECANDPNATPEKYIELIDALRRGGAAVGGVGIQGHVSNP-SGEVICGALDKL 447
Query: 130 XXXXXXPIWITELDVSEPDVGLRADDLEVVLREAYAHPAVEGVVLWGFMEGQMWRRDAYL 189
PIWITELDVSEPDV LRADDLEVVLREAYAHPAV GVVLWGFM+G+MWR+DA L
Sbjct: 448 AASTGLPIWITELDVSEPDVSLRADDLEVVLREAYAHPAVAGVVLWGFMQGRMWRQDASL 507
Query: 190 VDADGTVNEAGQRFLQLQREWRSDARGIVDGDGRFKFRGFHGTYVAQVTTATGKMLKTFT 249
VDADGTVNEAGQR + L+REW SDARG +DGDG F FRG+HGTYV QVTTATGK+LKTFT
Sbjct: 508 VDADGTVNEAGQRLVNLRREWTSDARGTIDGDGHFTFRGYHGTYVVQVTTATGKILKTFT 567
Query: 250 VEKGDNSLELDLDI 263
V+KGD SL LD++I
Sbjct: 568 VDKGDTSLVLDMEI 581
>Os01g0134900 Similar to (1,4)-beta-xylan endohydrolase, isoenzyme X-II (EC
3.2.1.8) (Fragment)
Length = 371
Score = 248 bits (633), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 124/194 (63%), Positives = 146/194 (75%), Gaps = 2/194 (1%)
Query: 70 LFVNDYNVLRGNDPNATPEKYVELVDALRRXXXXXXXXXXXXHMDSPVAGQVIRXXXXXX 129
LFVNDYNV GNDPNATPEKY+E + AL++ H+ +PV G+VI
Sbjct: 180 LFVNDYNVEGGNDPNATPEKYIEQITALQQKGAAVGGIGLQGHVTNPV-GEVI-CDALDK 237
Query: 130 XXXXXXPIWITELDVSEPDVGLRADDLEVVLREAYAHPAVEGVVLWGFMEGQMWRRDAYL 189
P+W+TELDV E DV LRADDLEVVLREAYAHPAVEGV+ WGFM+G MWR+DA L
Sbjct: 238 LATTDLPVWLTELDVCESDVDLRADDLEVVLREAYAHPAVEGVMFWGFMQGHMWRQDACL 297
Query: 190 VDADGTVNEAGQRFLQLQREWRSDARGIVDGDGRFKFRGFHGTYVAQVTTATGKMLKTFT 249
V++DGTVN+AG+RF+ L+REW S ARG +DGDG FKFRGFHGTYV Q+ TATGKM KTFT
Sbjct: 298 VNSDGTVNDAGERFIDLRREWTSHARGHIDGDGHFKFRGFHGTYVVQLATATGKMHKTFT 357
Query: 250 VEKGDNSLELDLDI 263
VEKGD L LD+D+
Sbjct: 358 VEKGDTPLVLDMDV 371
>Os01g0134800 Similar to (1,4)-beta-xylan endohydrolase, isoenzyme X-II (EC
3.2.1.8) (Fragment)
Length = 368
Score = 216 bits (551), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 112/195 (57%), Positives = 134/195 (68%), Gaps = 3/195 (1%)
Query: 70 LFVNDYNVLRGNDPNATPEKYVELVDALRRXXXXXXXXXXXXHMDSPVAGQVIRXXXXXX 129
LFVNDYNV NDPNATPE+YVELV L++ H+ PV G VI
Sbjct: 176 LFVNDYNVESANDPNATPERYVELVTDLQKRGAAVGGIGVQGHVTHPV-GDVI-CDALDR 233
Query: 130 XXXXXXPIWITELDVSEPDVGLRADDLEVVLREAYAHPAVEGVVLWGFMEGQMWRRDAYL 189
P+WITELDVS D +RADDLE+VLREA+AHPAVEG++LWGFM+G MWR A+L
Sbjct: 234 LAVTGLPVWITELDVSAADEAVRADDLEIVLREAFAHPAVEGIMLWGFMQGNMWRSHAHL 293
Query: 190 VDADGTVNEAGQRFLQLQREWRSDARGIVDGDGRFKFRGFHGTYVAQVTTATGKM-LKTF 248
VDADG +NEAG R++ L++EW S ARG VDG G FKFRGFHG YV Q+TT G+M + F
Sbjct: 294 VDADGKLNEAGHRYVGLRQEWTSHARGQVDGSGHFKFRGFHGKYVVQLTTGAGEMKYQQF 353
Query: 249 TVEKGDNSLELDLDI 263
V KGD L LD+D+
Sbjct: 354 DVGKGDGPLVLDMDL 368
>Os03g0672900 Similar to RXF12 protein (Xylan endohydrolase) (F19C14.2 protein)
Length = 756
Score = 171 bits (433), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 99/196 (50%), Positives = 122/196 (62%), Gaps = 4/196 (2%)
Query: 70 LFVNDYNVLRGN-DPNATPEKYVELVDALRRXXXXXXXXXXXXHMDSPVAGQVIRXXXXX 128
LFVNDYNV D ATPE Y+ V L+ H+ +PV G V+R
Sbjct: 563 LFVNDYNVEGACVDVRATPEAYIAQVTGLQEQGAAVGGVGLQGHVTAPV-GAVVRAALDR 621
Query: 129 XXXXXXXPIWITELDVSEPDVGLRADDLEVVLREAYAHPAVEGVVLWGFMEGQMWRRDAY 188
P+W TELDVS + +RADDLE +LREAYAHPAV+GVVLWGF E M R DA+
Sbjct: 622 LAVLGL-PLWFTELDVSSANEHVRADDLEAMLREAYAHPAVDGVVLWGFWELSMSRDDAH 680
Query: 189 LVDADGTVNEAGQRFLQLQREWRSDARGIVDGDGRFKFRGFHGTY-VAQVTTATGKMLKT 247
LVDA+G VNEAG+R LQL+REW + A G DG+G F+FRG HG Y V VT A K+ +
Sbjct: 681 LVDAEGEVNEAGRRLLQLKREWLTRAHGRADGNGEFRFRGHHGAYHVDVVTPAGAKISQE 740
Query: 248 FTVEKGDNSLELDLDI 263
FTV+K D L L++ +
Sbjct: 741 FTVDKDDAPLVLNITV 756
>Os07g0456700 Similar to (1,4)-beta-xylan endohydrolase (EC 3.2.1.8)
Length = 1101
Score = 169 bits (427), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 88/190 (46%), Positives = 122/190 (64%), Gaps = 3/190 (1%)
Query: 70 LFVNDYNVLRGNDPNATPEKYVELVDALRRXXXXXXXXXXXXHMDSPVAGQVIRXXXXXX 129
LFVNDYNV D +TPEK +E + L+ H+ PV G +I
Sbjct: 910 LFVNDYNVEDRCDSKSTPEKLIEQIVDLQERGAPVGGIGLQGHITHPV-GDII-CDSLDK 967
Query: 130 XXXXXXPIWITELDVSEPDVGLRADDLEVVLREAYAHPAVEGVVLWGFMEGQMWRRDAYL 189
PIWITELDV+ + +RADDLEV LREA+AHP+VEG++LWGF E M+R A+L
Sbjct: 968 LSILGLPIWITELDVTAENEHIRADDLEVYLREAFAHPSVEGIILWGFWELFMFREHAHL 1027
Query: 190 VDADGTVNEAGQRFLQLQREWRSDARGIVDGDGRFKFRGFHGTYVAQVTTATGKMLKTFT 249
VD DGT+NEAG+R++ L++EW + G VD G KFRG+HG+Y +V T +GK+ ++F
Sbjct: 1028 VDVDGTINEAGKRYIALKQEWLTSITGNVDHHGELKFRGYHGSYTVEVATPSGKVTRSFV 1087
Query: 250 VEKGDNSLEL 259
V+K DN++++
Sbjct: 1088 VDK-DNAVQV 1096
>Os05g0304000
Length = 112
Score = 153 bits (387), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 71/95 (74%), Positives = 82/95 (86%)
Query: 167 PAVEGVVLWGFMEGQMWRRDAYLVDADGTVNEAGQRFLQLQREWRSDARGIVDGDGRFKF 226
AV GVVLWGFM+G+MWR+DA LVDADGT+NEAGQR + L+REW SDARG VDGDG F+F
Sbjct: 16 AAVAGVVLWGFMQGRMWRQDASLVDADGTINEAGQRLVDLRREWMSDARGTVDGDGNFRF 75
Query: 227 RGFHGTYVAQVTTATGKMLKTFTVEKGDNSLELDL 261
RG+HGTYV QVTTA GK LKTFTV+KGD SL +D+
Sbjct: 76 RGYHGTYVVQVTTAAGKTLKTFTVDKGDTSLVVDM 110
>Os03g0243700 Glycoside hydrolase, family 10 protein
Length = 401
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 93/201 (46%), Gaps = 14/201 (6%)
Query: 70 LFVNDYNVLR-GNDPNATPEKYVELVDALRRXXXXXXXXXXXXHMDSPVAGQVIRXXXXX 128
LF+N++NV+ +D ++T + YV + LR H P +
Sbjct: 208 LFMNEFNVIETCDDVSSTVDTYVAKLKDLRAGGAVLEGIGLEGHFLKP--NIPLMRAVLD 265
Query: 129 XXXXXXXPIWITELDVSEP-DVGLRADDLEVVLREAYAHPAVEGVVLWGFMEG----QMW 183
PIW TE+D+S D +A LE VLREAY+HPAV GV+LW + QM
Sbjct: 266 KLATLGLPIWFTEIDISNRYDAQTQAVYLEQVLREAYSHPAVTGVMLWTALHPNGCYQMC 325
Query: 184 RRDAYLVDADGTVNEAGQRFLQLQREWRS-DARGIVDGDGRFKFRGFHGTYVAQVTTATG 242
D L + V + R LQ EW++ A G D G + F GF G Y+ VT A
Sbjct: 326 LTDWNLNNL--PVGDVVDRLLQ---EWQTGQAAGPTDAHGAYSFSGFLGEYIVSVTYANS 380
Query: 243 KMLKTFTVEKGDNSLELDLDI 263
TF++ GD + +++ I
Sbjct: 381 TSQATFSLSPGDETRHINIQI 401
>Os05g0304900 Glycoside hydrolase, family 10 protein
Length = 480
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 89/198 (44%), Gaps = 5/198 (2%)
Query: 70 LFVNDYNVLR-GNDPNATPEKYVELVDALRRXXXXXXXXXXXXHMDSPVAGQVIRXXXXX 128
LF+ND+NV+ +D +++ + YV + L H P V
Sbjct: 282 LFLNDFNVVEVCDDLSSSADSYVSRLRQLADGGVTFEGIGLEGHFGKPNIPYV--RAVLD 339
Query: 129 XXXXXXXPIWITELDVSEP-DVGLRADDLEVVLREAYAHPAVEGVVLWGFMEGQMWRRDA 187
PIW+TE+D+S D +A LE VLRE +AHP+V+G++LW M+
Sbjct: 340 KLGTLRLPIWLTEIDISSSFDPKTQAAYLEEVLREGFAHPSVDGIMLWTAMDTNASCYQM 399
Query: 188 YLVDADGTVNEAGQRFLQLQREWRS-DARGIVDGDGRFKFRGFHGTYVAQVTTATGKMLK 246
L + + T AG +L EW++ + G + G F F F G Y VT
Sbjct: 400 CLTNQNFTNLPAGDVVDKLLGEWQTKETLGTTNDRGSFNFSAFLGEYKLSVTYLNLTAEG 459
Query: 247 TFTVEKGDNSLELDLDIE 264
TF++ D++ +++ +
Sbjct: 460 TFSLAHSDDTKHINIRLS 477
>Os03g0201400 Glycoside hydrolase, family 10 protein
Length = 339
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 87/198 (43%), Gaps = 19/198 (9%)
Query: 70 LFVNDYNVL-RGNDPNATPEKYVELVDAL---RRXXXXXXXXXXXXHMDSPVAGQVIRXX 125
+F+N+YN L + D A P +YV+ + + H +PV +R
Sbjct: 144 MFMNEYNTLEQPGDMAALPARYVQRLKQIIGGYPQNGAGMAIGLEGHFTAPVNIPYMRAA 203
Query: 126 XXXXXXXXXXPIWITELDVSEPDVGLRADDLEVVLREAYAHPAVEGVVLWGFMEGQMWR- 184
P+W+TE+DV +A LE +LREAYAHPAV+GV+LW WR
Sbjct: 204 LDTLAQAGV-PVWLTEVDVG--GGASQAYYLEEILREAYAHPAVQGVILWA-----AWRP 255
Query: 185 RDAY---LVDADGTVNEAGQRFLQLQREWRSDAR-GIVDGDGRFKFRGFHGTYVAQVT-- 238
+ Y L D D G +L EW + R G D +G F+ HG Y VT
Sbjct: 256 QGCYVMCLTDNDFNNLPQGDVVDRLITEWSTAPRAGTTDAEGFFQAELAHGEYKVTVTHP 315
Query: 239 TATGKMLKTFTVEKGDNS 256
+ + ++ VE G S
Sbjct: 316 SLNTSVSQSVKVEMGSGS 333
>Os03g0201901 Glycoside hydrolase, family 10 protein
Length = 412
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 70/134 (52%), Gaps = 15/134 (11%)
Query: 136 PIWITELDVSE-PDVGLRADDLEVVLREAYAHPAVEGVVLWGFMEGQMWRRDAY---LVD 191
PIW+TE+DV+ PD +A LE +LRE YAHPAV G++LW Q Y L D
Sbjct: 286 PIWLTEIDVAPGPD---QARHLEQILREVYAHPAVHGIILWTAWHPQ----GCYVMCLTD 338
Query: 192 ADGTVNEAGQRFLQLQREWRSDAR-GIVDGDGRFKFRGFHGTYVAQVT--TATGKMLKTF 248
+ AG +L EW++ + G+ D DG ++ FHG Y VT A + ++
Sbjct: 339 NNFKNLPAGDVVDKLIWEWKTRSHVGVADADGYYETELFHGDYKVTVTHPAANSTVAQSL 398
Query: 249 TVEK-GDNSLELDL 261
+V++ DN + +
Sbjct: 399 SVDRESDNEFTIHV 412
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.139 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,572,988
Number of extensions: 234660
Number of successful extensions: 360
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 349
Number of HSP's successfully gapped: 11
Length of query: 265
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 166
Effective length of database: 11,866,615
Effective search space: 1969858090
Effective search space used: 1969858090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)