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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0319900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to (1,4)-beta-xylan endohydrolase, isoenzyme X-II (EC 3.2.1.8) (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.88 (0.0331) R2 : 0.399
β1 : 1.24 (0.144) R2dD : 0.155 R2D : -0.0936
β2 : 0.913 (0.079) R2dC : 0.177 R2C : 0.168
β3 : 2.05 (0.165) R2dE : 0.358 R2E : 0.0662
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.28 (0.0792) R2dN8 : 0.0296 R2N8 : -0.0675
σ : 0.593
deviance : 162.34
__
_____
C
peak time of C : 20.9
E
wheather : temperature
threshold : 24.12
memory length : 5680
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
160.26 0.595 3.92 1.07 0.913 2.38 -0.482 1.35 0.244 20.9 23.7 5648 -- --
161.96 0.593 3.88 1.3 0.922 2.19 -0.651 -- 0.32 20.9 23.99 5671 -- --
160.85 0.591 3.94 1.1 0.917 2.54 -- 1.67 0.238 20.9 23.21 5691 -- --
162.34 0.593 3.88 1.24 0.913 2.05 -- -- 0.28 20.9 24.12 5680 -- --
208.02 0.672 3.92 1.13 -- 2.69 -- 1.97 0.226 -- 22.83 5764 -- --
215.89 0.689 4 0.161 0.912 -- -0.561 -- -0.229 20.7 -- -- -- --
216.92 0.69 4 0.18 0.915 -- -- -- -0.229 20.6 -- -- -- --
209.62 0.674 3.86 1.25 -- 2.07 -- -- 0.271 -- 23.87 5769 -- --
186.32 0.636 3.96 -- 0.917 1.17 -- -- -0.0667 20.8 31.25 4526 -- --
264.08 0.759 3.97 0.177 -- -- -- -- -0.237 -- -- -- -- --
217.77 0.69 4 -- 0.914 -- -- -- -0.249 20.7 -- -- -- --
233.66 0.712 3.93 -- -- 1.17 -- -- -0.0609 -- 33.1 5819 -- --
264.9 0.76 3.98 -- -- -- -- -- -0.257 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 159.53 humidity 80 43200 < th dose dependent rect. 17 2
5 159.99 radiation 1 43200 < th dose independent rect. 18 11
7 160.05 radiation 10 43200 < th dose dependent rect. 18 11
9 160.12 radiation 40 43200 < th dose dependent rect. 18 3
28 160.51 humidity 70 43200 < th dose independent rect. 16 5
30 160.54 humidity 70 43200 < th dose independent rect. 15 7
31 160.54 radiation 40 43200 < th dose dependent rect. 18 1
51 160.72 radiation 1 43200 < th dose independent rect. 18 3
58 160.76 radiation 1 43200 < th dose independent rect. 18 1
60 160.77 humidity 70 43200 > th dose independent rect. 16 5
68 160.81 radiation 1 43200 > th dose independent rect. 18 11
70 160.82 humidity 80 43200 > th dose independent rect. 18 6
77 160.89 humidity 70 43200 < th dose independent rect. 17 3
96 161.09 humidity 60 43200 < th dose dependent rect. 22 13
103 161.16 humidity 50 43200 > th dose dependent rect. 17 5
128 161.28 humidity 60 43200 < th dose dependent rect. 18 18
150 161.47 humidity 80 43200 > th dose independent rect. 19 4
159 161.56 atmosphere 1010 43200 < th dose independent rect. 22 2
165 161.60 radiation 1 14400 < th dose dependent rect. 5 6
168 161.62 humidity 60 43200 > th dose independent rect. 13 13
185 161.69 radiation 1 43200 > th dose independent rect. 18 1
202 161.72 humidity 60 43200 < th dose dependent rect. 8 3
205 161.73 radiation 1 14400 < th dose dependent rect. 3 8
233 161.84 radiation 1 14400 < th dose dependent rect. 20 15
258 161.91 humidity 60 43200 < th dose dependent rect. 9 1
268 161.94 atmosphere 1005 43200 > th dose dependent rect. 16 1
278 161.96 atmosphere 1010 43200 > th dose independent rect. 22 1
314 162.08 humidity 60 43200 < th dose dependent sin 8 NA
318 162.09 humidity 80 43200 > th dose independent rect. 21 1
330 162.12 wind 5 43200 > th dose dependent rect. 5 1
336 162.15 radiation 1 14400 < th dose dependent sin 7 NA
360 162.22 wind 7 43200 < th dose independent rect. 13 11
373 162.25 wind 7 43200 > th dose independent rect. 15 2
394 162.29 wind 7 43200 > th dose independent rect. 13 11
396 162.29 temperature 20 4320 < th dose dependent rect. 23 2
406 162.30 wind 5 43200 > th dose dependent rect. 12 11
440 162.35 wind 7 43200 > th dose independent rect. 12 16
457 162.38 atmosphere 1005 43200 > th dose dependent rect. 19 1
481 162.42 wind 5 43200 > th dose dependent rect. 15 3
485 162.42 radiation 1 14400 < th dose dependent rect. 17 18
486 162.43 humidity 70 43200 < th dose independent sin 17 NA
499 162.45 wind 7 43200 < th dose independent rect. 15 3
509 162.45 radiation 1 14400 < th dose dependent rect. 15 20
513 162.46 wind 7 43200 < th dose independent rect. 12 16
514 162.46 atmosphere 1010 43200 < th dose independent rect. 6 18
520 162.47 atmosphere 1010 43200 < th dose independent rect. 21 19
530 162.48 atmosphere 1010 43200 < th dose independent rect. 21 17
542 162.49 wind 7 43200 > th dose independent rect. 14 5
613 162.53 wind 7 43200 < th dose independent rect. 14 5
616 162.53 atmosphere 1010 43200 < th dose independent rect. 21 11
632 162.54 humidity 80 43200 < th dose independent rect. 21 1
639 162.54 atmosphere 1010 43200 > th dose independent rect. 6 18
652 162.55 humidity 60 43200 < th dose independent rect. 21 14
679 162.56 temperature 20 720 > th dose dependent sin 0 NA
687 162.57 humidity 50 43200 > th dose independent sin 9 NA
704 162.57 humidity 50 43200 > th dose independent rect. 17 20
710 162.57 atmosphere 1010 43200 < th dose independent rect. 15 23
718 162.58 atmosphere 1010 43200 < th dose independent no NA NA
731 162.58 atmosphere 1010 43200 < th dose independent rect. 13 22
734 162.58 atmosphere 1010 43200 < th dose independent rect. 10 23
743 162.58 temperature 20 4320 < th dose dependent rect. 18 9
750 162.59 atmosphere 1010 43200 < th dose independent rect. 6 12
773 162.59 atmosphere 1010 43200 < th dose independent rect. 8 23
783 162.60 atmosphere 1010 43200 < th dose independent sin 9 NA
791 162.60 atmosphere 1010 43200 > th dose independent rect. 21 19
801 162.60 atmosphere 1005 43200 > th dose dependent sin 18 NA
807 162.61 atmosphere 1010 43200 < th dose independent sin 7 NA
811 162.61 atmosphere 1010 43200 > th dose independent rect. 6 10
812 162.61 atmosphere 1010 43200 < th dose independent rect. 6 10
837 162.62 atmosphere 1010 43200 > th dose independent rect. 11 1
840 162.62 atmosphere 1010 43200 > th dose independent rect. 6 12
867 162.63 atmosphere 1010 43200 < th dose independent sin 4 NA
869 162.63 atmosphere 1010 43200 < th dose independent rect. 9 4
908 162.64 atmosphere 1010 43200 < th dose independent sin 0 NA
945 162.65 atmosphere 1010 43200 < th dose independent sin 22 NA
948 162.65 atmosphere 1010 43200 > th dose independent rect. 8 6
949 162.65 atmosphere 1010 43200 < th dose independent rect. 8 6
953 162.65 atmosphere 1010 43200 < th dose independent rect. 8 8
977 162.65 atmosphere 1005 43200 > th dose dependent rect. 23 1
987 162.66 atmosphere 1010 43200 > th dose independent rect. 9 4