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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0304900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glycoside hydrolase, family 10 protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.85 (0.0584) R2 : 0.73
β1 : -6.03 (0.211) R2dD : 0.515 R2D : 0.305
β2 : 1.26 (0.136) R2dC : 0.051 R2C : -0.0213
β3 : -1.44 (0.164) R2dE : 0.0548 R2E : -0.11
β4 : -3.73 (0.523) R2dD*C : 0.0307 R2D*C : -0.0167
β5 : 4.08 (0.627) R2dD*E : 0.026 R2D*E : -0.0654
γ1 : -2.62 (0.133) R2dN8 : 0.368 R2N8 : 0.0188
σ : 1.07
deviance : 521.33
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_____
C
peak time of C : 10.9
E
wheather : radiation
threshold : 20
memory length : 1344
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 11
open length of G : 0.981

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
521.33 1.07 4.85 -6.03 1.26 -1.44 -3.73 4.08 -2.62 10.9 20 1344 11 0.981
570.3 1.11 4.84 -5.94 1.28 -1.49 -3.99 -- -2.61 10.8 19.98 1343 10.9 1.02
572.01 1.11 4.86 -6.08 1.18 -1.49 -- 4.25 -2.45 10.8 19.96 1335 11 1.65
629.09 1.17 4.8 -6.04 1.17 -1.71 -- -- -2.39 10.3 19.85 1304 10.9 1.89
635.33 1.17 4.85 -6.1 -- -1.64 -- 4.78 -2.37 -- 19.97 1242 11.1 2.23
670.95 1.21 4.71 -5.73 1.34 -- -4.06 -- -2.03 10.8 -- -- -- --
738.72 1.27 4.71 -5.89 1.37 -- -- -- -2.05 10.4 -- -- -- --
661.86 1.2 4.85 -5.93 -- -2.05 -- -- -2.56 -- 29.92 1239 11.2 2.35
1624.64 1.88 4.8 -- 1.18 -1.12 -- -- -1.81 10.8 9.927 1777 11.1 2.33
854.12 1.37 4.75 -5.92 -- -- -- -- -2.05 -- -- -- -- --
1654.56 1.9 4.56 -- 1.41 -- -- -- -1.39 10.7 -- -- -- --
1541.4 1.83 4.68 -- -- -1.86 -- -- -1.73 -- 9.809 22702 13.2 1.78
1777.72 1.97 4.6 -- -- -- -- -- -1.39 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 517.51 radiation 30 14400 > th dose independent rect. 7 1
16 519.85 radiation 30 14400 > th dose dependent rect. 7 1
32 521.18 wind 9 43200 > th dose independent rect. 16 2
33 523.50 wind 9 43200 < th dose independent rect. 16 2
34 526.18 wind 9 43200 > th dose dependent rect. 15 2
36 532.28 wind 7 43200 > th dose independent rect. 7 7
38 532.37 temperature 20 14400 > th dose independent rect. 21 3
39 532.55 wind 7 43200 < th dose independent rect. 8 6
42 532.75 temperature 20 14400 < th dose independent rect. 21 3
43 532.77 radiation 20 1440 < th dose independent rect. 11 1
44 533.25 temperature 20 4320 > th dose independent rect. 21 1
46 533.48 wind 7 43200 < th dose independent rect. 4 11
49 533.73 wind 7 43200 > th dose independent rect. 4 11
53 533.89 radiation 30 4320 < th dose independent rect. 16 16
61 534.22 wind 1 14400 < th dose independent rect. 22 4
63 534.24 temperature 20 1440 < th dose independent rect. 5 1
67 534.45 temperature 20 4320 > th dose independent rect. 19 5
72 534.63 wind 7 43200 > th dose independent rect. 10 2
75 534.68 wind 7 43200 > th dose independent rect. 21 18
77 534.75 wind 7 43200 < th dose independent rect. 17 13
78 534.79 wind 7 43200 < th dose independent rect. 20 19
85 535.03 wind 9 43200 < th dose independent rect. 15 22
88 535.18 wind 7 43200 > th dose independent rect. 16 21
93 535.25 temperature 20 1440 > th dose independent rect. 4 3
94 535.25 temperature 20 1440 < th dose independent rect. 4 3
97 535.31 wind 7 43200 < th dose independent rect. 10 2
104 535.45 wind 1 14400 > th dose independent rect. 22 4
106 535.48 wind 5 43200 > th dose dependent rect. 10 4
107 535.50 wind 7 43200 < th dose independent sin 11 NA
110 535.52 wind 7 43200 > th dose dependent rect. 9 6
113 535.62 wind 7 43200 > th dose independent rect. 17 13
123 535.85 temperature 20 1440 > th dose independent rect. 5 1
149 536.40 wind 7 43200 > th dose independent sin 11 NA
154 536.52 wind 9 43200 < th dose independent rect. 15 17
161 536.77 wind 7 43200 < th dose independent sin 3 NA
172 536.93 wind 7 43200 > th dose independent sin 4 NA
174 536.97 wind 9 43200 > th dose independent rect. 14 23
228 538.15 wind 7 43200 > th dose dependent rect. 11 1
232 538.21 wind 1 14400 < th dose independent rect. 20 6
259 538.71 wind 7 43200 > th dose dependent rect. 15 22
267 538.93 wind 7 43200 > th dose dependent rect. 16 15
289 539.45 radiation 10 1440 < th dose independent rect. 11 21
290 539.45 wind 9 43200 < th dose independent rect. 4 22
292 539.47 wind 9 43200 < th dose independent rect. 4 20
312 539.70 wind 9 43200 > th dose independent rect. 14 19
316 539.72 wind 7 43200 > th dose dependent sin 12 NA
317 539.74 wind 9 43200 < th dose independent rect. 8 23
344 539.92 wind 9 43200 < th dose independent rect. 1 23
352 540.03 wind 9 43200 < th dose independent no NA NA
362 540.07 wind 5 43200 > th dose dependent rect. 21 3
365 540.08 wind 5 43200 > th dose dependent rect. 21 19
372 540.10 radiation 20 43200 < th dose dependent rect. 8 1
389 540.26 wind 9 43200 < th dose independent rect. 21 23
401 540.32 atmosphere 995 43200 < th dose independent rect. 21 18
417 540.40 wind 7 43200 > th dose dependent rect. 19 22
432 540.46 radiation 10 1440 < th dose independent rect. 13 18
436 540.55 atmosphere 995 43200 < th dose dependent rect. 11 17
448 540.66 wind 5 43200 > th dose dependent sin 2 NA
449 540.66 radiation 10 4320 > th dose dependent rect. 16 16
464 540.75 atmosphere 995 43200 < th dose dependent rect. 11 21
513 541.11 humidity 70 43200 > th dose independent rect. 11 1
524 541.15 wind 7 43200 > th dose dependent rect. 8 22
538 541.25 wind 7 43200 < th dose independent rect. 21 2
539 541.25 wind 1 14400 > th dose independent rect. 20 6
545 541.28 temperature 20 1440 < th dose independent rect. 22 9
547 541.28 wind 9 43200 > th dose independent rect. 4 22
550 541.31 wind 9 43200 > th dose independent rect. 9 23
552 541.32 wind 5 43200 > th dose dependent rect. 18 11
581 541.51 wind 7 43200 > th dose dependent no NA NA
588 541.53 wind 7 43200 > th dose dependent rect. 4 23
589 541.54 wind 7 43200 > th dose dependent rect. 1 23
616 541.72 radiation 10 1440 < th dose independent sin 14 NA
618 541.72 wind 9 43200 > th dose independent rect. 7 19
621 541.75 wind 7 43200 > th dose independent rect. 21 2
627 541.78 temperature 20 1440 > th dose independent rect. 22 9
633 541.81 wind 9 43200 > th dose independent no NA NA
641 541.83 wind 9 43200 > th dose independent rect. 24 23
693 542.06 wind 9 43200 < th dose independent sin 0 NA
801 542.54 wind 1 14400 < th dose dependent rect. 19 9
838 542.74 wind 1 14400 < th dose dependent rect. 21 5
859 542.88 wind 1 14400 < th dose dependent rect. 19 7
889 543.01 radiation 10 4320 > th dose dependent rect. 7 1
958 543.39 radiation 10 43200 > th dose independent rect. 7 2
994 543.56 atmosphere 995 43200 > th dose independent sin 6 NA