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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0243700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glycoside hydrolase, family 10 protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.23 (0.0522) R2 : 0.657
β1 : -1.53 (0.193) R2dD : 0.0556 R2D : -0.00873
β2 : 1.42 (0.136) R2dC : 0.0946 R2C : 0.228
β3 : 3.79 (0.185) R2dE : 0.395 R2E : 0.475
β4 : -3.6 (0.502) R2dD*C : 0.0386 R2D*C : -0.000902
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.367 (0.112) R2dN8 : 0.012 R2N8 : 0.0186
σ : 0.974
deviance : 437.45
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_____
C
peak time of C : 1.84
E
wheather : temperature
threshold : 26.3
memory length : 675
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18.6
open length of G : 5.13

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
435.57 0.981 4.22 -0.903 1.31 3.18 -3.67 6.15 -0.514 1.9 25.88 671 18.5 4.73
437.45 0.974 4.23 -1.53 1.42 3.79 -3.6 -- -0.367 1.84 26.3 675 18.6 5.13
485.89 1.03 4.19 -0.868 1.44 3.05 -- 5.69 -0.434 2.09 26.03 667 18.5 4.72
483.25 1.02 4.26 -1.48 1.41 3.65 -- -- -0.491 2.2 26.12 659 18.6 4.83
557.2 1.1 4.3 -0.908 -- 3.92 -- 4.65 -0.817 -- 24.64 652 18.5 4.85
831.14 1.35 4.32 -1.05 2.57 -- -1.87 -- -0.76 2.67 -- -- -- --
843.05 1.36 4.31 -1 2.58 -- -- -- -0.75 2.8 -- -- -- --
553.53 1.1 4.35 -1.53 -- 4.42 -- -- -0.884 -- 25.07 659 18.5 5.24
528.56 1.07 4.23 -- 1.51 3.44 -- -- -0.358 1.87 26.15 581 20 2.47
1228.35 1.64 4.3 -0.89 -- -- -- -- -0.684 -- -- -- -- --
869.42 1.38 4.29 -- 2.56 -- -- -- -0.639 2.8 -- -- -- --
615.2 1.16 4.29 -- -- 4.26 -- -- -0.627 -- 25.41 581 19.9 2.74
1249.26 1.65 4.28 -- -- -- -- -- -0.585 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 452.32 temperature 25 720 > th dose dependent rect. 18 5
12 471.00 humidity 70 720 < th dose independent rect. 18 2
33 481.19 humidity 80 720 < th dose dependent rect. 18 3
49 495.91 humidity 70 720 > th dose independent rect. 17 8
145 528.29 temperature 30 720 > th dose independent rect. 18 1
179 534.35 humidity 70 720 > th dose independent rect. 17 3
183 535.65 temperature 15 720 > th dose dependent rect. 17 6
225 545.55 humidity 70 720 > th dose independent rect. 17 16
228 546.19 humidity 70 720 > th dose independent sin 12 NA
233 547.09 temperature 30 720 < th dose independent rect. 17 8
259 548.38 humidity 70 1440 > th dose independent rect. 18 13
335 553.49 humidity 60 720 > th dose dependent rect. 17 6
344 555.65 temperature 25 720 > th dose dependent sin 12 NA
364 560.47 humidity 70 720 < th dose independent sin 12 NA
384 564.64 humidity 70 720 > th dose dependent rect. 19 2
419 568.83 temperature 30 720 < th dose dependent rect. 17 6
433 570.66 radiation 1 720 > th dose independent rect. 18 11
435 570.71 radiation 1 720 > th dose independent rect. 18 1
488 571.87 temperature 30 1440 < th dose independent rect. 17 15
538 574.62 humidity 50 1440 < th dose independent rect. 16 1
543 575.81 temperature 20 90 > th dose dependent rect. 3 2
546 576.32 humidity 50 1440 < th dose dependent rect. 16 1
553 576.94 temperature 30 720 < th dose dependent rect. 18 3
659 582.94 temperature 20 10 > th dose dependent rect. 3 3
708 583.96 temperature 30 1440 < th dose independent sin 12 NA
725 585.07 temperature 30 1440 > th dose independent sin 12 NA
994 593.45 wind 3 90 < th dose dependent rect. 3 2
995 593.45 wind 3 10 < th dose dependent rect. 3 3