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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0134900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to (1,4)-beta-xylan endohydrolase, isoenzyme X-II (EC 3.2.1.8) (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.1 (0.0473) R2 : 0.399
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.975 (0.134) R2dC : 0.082 R2C : 0.18
β3 : 2.39 (0.21) R2dE : 0.206 R2E : 0.314
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.176 (0.101) R2dN8 : 0.00525 R2N8 : 0.0105
σ : 0.888
deviance : 363.38
__
_____
C
peak time of C : 5.33
E
wheather : wind
threshold : 1
memory length : 221
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 4.05
open length of G : 0.478

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
353.62 0.884 4.11 -0.576 0.997 2.61 1.72 -1.96 -0.219 5.44 0.997 221 4.03 0.674
354.1 0.876 4.11 -0.468 0.986 2.52 1.76 -- -0.199 5.39 0.9661 221 4.07 0.613
356.73 0.88 4.11 -0.565 0.971 2.62 -- -1.59 -0.211 5.28 0.9998 223 4.04 0.483
356.9 0.88 4.11 -0.499 0.968 2.46 -- -- -0.22 5.26 0.9566 223 4.05 0.467
396.7 0.928 4.12 -0.63 -- 3.35 -- -2.12 -0.156 -- 1.01 224 4.05 0.467
444.51 0.988 4.12 -0.29 1.56 -- 2.88 -- -0.369 5.51 -- -- -- --
464.91 1.01 4.13 -0.281 1.58 -- -- -- -0.382 5.4 -- -- -- --
397.61 0.929 4.11 -0.529 -- 3.03 -- -- -0.163 -- 0.9706 224 4.07 0.45
363.38 0.888 4.1 -- 0.975 2.39 -- -- -0.176 5.33 1 221 4.05 0.478
595.02 1.14 4.15 -0.228 -- -- -- -- -0.343 -- -- -- -- --
467 1.01 4.12 -- 1.58 -- -- -- -0.351 5.4 -- -- -- --
404.26 0.936 4.1 -- -- 2.95 -- -- -0.1 -- 1.048 224 4.07 0.458
596.39 1.14 4.15 -- -- -- -- -- -0.318 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 359.96 wind 1.0 270 < th dose independent rect. 4 1
2 361.31 wind 1.0 270 < th dose dependent rect. 4 1
4 362.21 temperature 30.0 720 > th dose independent rect. 18 1
18 363.50 temperature 30.0 720 > th dose dependent rect. 18 1
33 365.36 humidity 70.0 720 < th dose independent rect. 18 14
34 366.02 humidity 70.0 720 > th dose independent rect. 19 8
36 366.78 humidity 80.0 720 < th dose dependent rect. 18 3
39 367.69 humidity 70.0 720 < th dose independent rect. 18 2
53 368.10 humidity 70.0 720 < th dose dependent rect. 18 14
85 369.63 wind 5.0 30 < th dose dependent rect. 4 5
118 371.35 wind 1.0 90 < th dose dependent rect. 4 3
126 372.15 temperature 30.0 1440 < th dose independent rect. 18 2
157 373.18 temperature 30.0 1440 < th dose independent rect. 18 4
159 373.26 atmosphere 1005.0 30 > th dose independent rect. 4 5
160 373.30 temperature 30.0 1440 < th dose independent rect. 18 14
161 373.31 radiation 1.0 30 < th dose dependent rect. 21 7
162 373.32 temperature 10.0 30 > th dose independent rect. 21 7
163 373.32 temperature 30.0 30 < th dose independent rect. 21 7
164 373.32 humidity 50.0 30 > th dose independent rect. 21 7
167 373.32 atmosphere 995.0 30 > th dose independent rect. 21 7
168 373.32 radiation 1.0 30 < th dose independent rect. 21 7
173 373.32 temperature 10.0 30 > th dose independent rect. 4 17
175 373.32 atmosphere 1015.0 30 < th dose independent rect. 4 17
182 373.46 wind 9.0 30 < th dose independent rect. 21 7
185 373.50 temperature 30.0 1440 < th dose independent rect. 18 11
199 374.20 temperature 30.0 1440 < th dose independent rect. 18 9
220 374.48 temperature 20.0 90 > th dose dependent rect. 4 1
221 374.50 wind 9.0 30 < th dose independent rect. 4 17
222 374.55 temperature 25.0 90 < th dose independent rect. 4 1
226 374.83 temperature 20.0 90 > th dose independent rect. 4 1
232 375.21 humidity 50.0 30 > th dose dependent rect. 21 7
236 375.29 humidity 70.0 1440 < th dose dependent rect. 16 1
256 375.70 precipitation 0.1 30 < th dose independent rect. 21 7
257 375.70 precipitation 0.1 30 < th dose dependent rect. 21 7
318 376.45 precipitation 0.1 10 < th dose independent rect. 4 17
319 376.45 precipitation 0.1 10 < th dose dependent rect. 4 17
324 376.79 atmosphere 995.0 30 > th dose independent rect. 4 17
358 376.99 atmosphere 995.0 30 > th dose dependent rect. 4 17
368 377.22 humidity 90.0 90 > th dose independent rect. 4 1
371 377.25 radiation 40.0 90 < th dose independent rect. 3 18
384 377.78 atmosphere 1005.0 10 > th dose independent rect. 4 17
390 378.01 humidity 50.0 30 > th dose dependent rect. 4 5
409 378.66 humidity 90.0 90 > th dose dependent rect. 4 1
413 378.87 temperature 10.0 30 > th dose dependent rect. 4 5
440 379.12 radiation 40.0 30 < th dose dependent rect. 4 18
441 379.13 temperature 20.0 30 > th dose independent rect. 4 5
487 379.75 wind 1.0 90 < th dose independent rect. 4 7
492 379.85 humidity 50.0 1440 < th dose independent rect. 16 1
513 380.08 wind 9.0 90 < th dose independent rect. 5 23
514 380.08 humidity 50.0 1440 < th dose dependent rect. 16 1
519 380.24 radiation 40.0 30 < th dose dependent rect. 4 5
523 380.30 wind 5.0 30 < th dose independent rect. 4 5
527 380.36 wind 9.0 10 < th dose independent rect. 9 19
533 380.54 atmosphere 1015.0 90 < th dose dependent rect. 4 1
560 380.73 atmosphere 1005.0 90 > th dose independent rect. 4 1
569 380.90 humidity 70.0 30 > th dose independent rect. 4 5
599 381.29 temperature 10.0 30 > th dose independent rect. 4 5
601 381.29 temperature 30.0 30 < th dose independent rect. 4 5
602 381.29 humidity 50.0 30 > th dose independent rect. 4 5
604 381.29 atmosphere 995.0 30 > th dose independent rect. 4 5
605 381.29 atmosphere 1015.0 30 < th dose independent rect. 4 5
606 381.29 precipitation 0.1 30 < th dose independent rect. 4 5
607 381.29 temperature 10.0 30 > th dose independent rect. 9 19
608 381.29 precipitation 0.1 30 < th dose dependent rect. 4 5
611 381.37 radiation 30.0 30 < th dose independent rect. 4 5
620 381.53 precipitation 0.1 30 < th dose independent rect. 9 19
621 381.53 precipitation 0.1 30 < th dose dependent rect. 9 19
626 381.68 wind 9.0 30 < th dose dependent rect. 21 7
646 382.01 temperature 15.0 90 > th dose independent rect. 5 23
652 382.11 radiation 1.0 90 < th dose independent rect. 4 1
658 382.15 radiation 10.0 90 < th dose dependent rect. 4 1
661 382.19 wind 7.0 90 < th dose independent rect. 4 1
665 382.20 precipitation 0.1 90 < th dose independent rect. 4 1
667 382.20 precipitation 0.1 90 < th dose dependent rect. 4 1
681 382.21 temperature 10.0 90 > th dose independent rect. 4 1
684 382.21 humidity 50.0 90 > th dose independent rect. 4 1
687 382.21 atmosphere 995.0 90 > th dose independent rect. 4 1
688 382.21 atmosphere 1010.0 90 < th dose independent rect. 4 1
715 382.37 radiation 30.0 90 < th dose independent rect. 3 8
772 382.83 humidity 70.0 720 > th dose independent rect. 17 16
810 383.48 temperature 20.0 30 > th dose independent rect. 4 3
817 383.57 temperature 30.0 1440 > th dose dependent sin 12 NA
835 383.65 radiation 40.0 90 < th dose dependent rect. 3 8
859 384.04 humidity 50.0 1440 > th dose independent rect. 16 1
872 384.20 radiation 40.0 1440 > th dose dependent rect. 13 2
881 384.31 humidity 70.0 1440 < th dose dependent sin 13 NA
893 384.45 wind 3.0 4320 < th dose independent rect. 6 3
895 384.45 temperature 10.0 270 > th dose dependent rect. 6 8
899 384.50 humidity 50.0 270 > th dose dependent rect. 21 4
916 384.53 wind 1.0 90 < th dose dependent rect. 4 18
929 384.65 radiation 40.0 270 < th dose dependent rect. 1 8
943 384.69 temperature 15.0 270 > th dose dependent rect. 1 5
948 384.74 wind 3.0 4320 < th dose dependent rect. 6 3
975 384.97 atmosphere 995.0 30 > th dose dependent rect. 21 7