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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0298700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Xylan endohydrolase isoenzyme X-I (EC 3.2.1.8).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.06 (0.027) R2 : 0.0169
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.16 (0.0569) R2dN8 : 0.0219 R2N8 : 0.0169
σ : 0.509
deviance : 119.02
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
114.04 0.502 3.04 0.237 0.348 0.367 -1.15 -1.3 0.217 11.4 0.3574 119 -- --
115.35 0.5 3.05 0.154 0.348 0.367 0.277 -- 0.197 11.8 0.1958 126 -- --
114.9 0.499 3.03 0.209 0.351 0.379 -- -0.406 0.225 11.5 0.2169 120 -- --
115.68 0.501 3.04 0.164 0.343 0.363 -- -- 0.199 11.7 0.19 126 -- --
116.34 0.502 3.06 0.147 -- 0.123 -- -0.39 0.18 -- 0.1792 152 -- --
117.07 0.507 3.06 0.127 0.142 -- -0.339 -- 0.169 3.65 -- -- -- --
117.41 0.507 3.06 0.132 0.143 -- -- -- 0.171 4.03 -- -- -- --
117.13 0.504 3.06 0.144 -- 0.124 -- -- 0.181 -- 0.05999 152 -- --
116.37 0.502 3.05 -- 0.32 0.334 -- -- 0.185 11.5 0.23 123 -- --
118.51 0.509 3.06 0.138 -- -- -- -- 0.175 -- -- -- -- --
117.87 0.508 3.06 -- 0.145 -- -- -- 0.156 4.02 -- -- -- --
117.69 0.505 3.06 -- -- 0.128 -- -- 0.17 -- 0.06004 151 -- --
119.02 0.509 3.06 -- -- -- -- -- 0.16 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 106.05 temperature 25.0 90 > th dose independent rect. 4 1
4 106.30 humidity 90.0 10 < th dose independent rect. 4 1
6 106.31 temperature 25.0 90 > th dose dependent rect. 4 1
8 106.86 wind 1.0 30 > th dose dependent rect. 4 1
10 107.84 temperature 25.0 10 > th dose independent rect. 20 9
11 108.12 humidity 90.0 10 < th dose dependent rect. 4 1
16 108.37 wind 1.0 30 > th dose independent rect. 4 1
17 108.49 temperature 25.0 10 > th dose independent rect. 1 4
32 109.28 temperature 10.0 1440 > th dose independent rect. 1 1
35 109.28 temperature 30.0 1440 < th dose independent rect. 1 1
39 109.28 humidity 50.0 1440 > th dose independent rect. 1 1
49 109.28 atmosphere 995.0 1440 > th dose independent rect. 1 1
50 109.28 radiation 1.0 1440 < th dose independent rect. 1 1
70 109.28 temperature 10.0 1440 > th dose independent rect. 2 23
73 109.28 radiation 1.0 1440 < th dose dependent rect. 1 1
78 109.31 humidity 90.0 30 < th dose independent rect. 24 1
80 109.41 temperature 25.0 30 > th dose dependent rect. 1 4
83 109.46 temperature 20.0 30 > th dose dependent rect. 24 1
85 109.50 atmosphere 1005.0 30 > th dose dependent rect. 4 1
86 109.51 temperature 25.0 30 > th dose independent rect. 24 1
90 109.51 humidity 90.0 30 < th dose dependent rect. 24 1
100 109.72 wind 1.0 30 > th dose independent rect. 24 1
101 109.73 atmosphere 1010.0 30 < th dose independent rect. 24 1
103 109.74 temperature 15.0 30 > th dose independent rect. 24 1
105 109.77 atmosphere 1000.0 30 > th dose independent rect. 24 1
106 109.78 humidity 80.0 30 > th dose independent rect. 24 1
107 109.81 wind 7.0 30 < th dose independent rect. 24 1
110 109.81 temperature 30.0 30 < th dose independent rect. 24 1
111 109.81 humidity 50.0 30 > th dose independent rect. 24 1
115 109.81 radiation 1.0 30 < th dose independent rect. 24 1
120 109.81 precipitation 0.1 30 < th dose independent rect. 24 1
121 109.81 temperature 10.0 30 > th dose independent rect. 1 23
122 109.81 radiation 1.0 30 < th dose dependent rect. 24 1
127 109.81 precipitation 0.1 30 < th dose dependent rect. 24 1
132 109.87 atmosphere 995.0 30 > th dose dependent rect. 24 1
133 109.88 wind 9.0 30 < th dose dependent rect. 24 1
140 110.05 humidity 50.0 30 > th dose dependent rect. 24 1
149 110.20 temperature 25.0 10 > th dose independent rect. 22 7
152 110.29 atmosphere 1005.0 10 > th dose independent rect. 4 1
153 110.29 temperature 30.0 30 < th dose dependent rect. 4 1
156 110.34 wind 5.0 30 < th dose independent rect. 4 1
163 110.36 temperature 10.0 30 > th dose independent rect. 4 1
165 110.36 temperature 30.0 30 < th dose independent rect. 4 1
166 110.36 humidity 50.0 30 > th dose independent rect. 4 1
170 110.36 atmosphere 995.0 30 > th dose independent rect. 4 1
172 110.36 atmosphere 1010.0 30 < th dose independent rect. 4 1
174 110.36 radiation 1.0 30 < th dose independent rect. 4 1
179 110.36 temperature 10.0 30 > th dose independent rect. 5 23
180 110.36 wind 9.0 30 < th dose dependent rect. 4 1
181 110.36 radiation 1.0 30 < th dose dependent rect. 4 1
186 110.37 precipitation 0.1 30 < th dose independent rect. 4 1
188 110.37 precipitation 0.1 30 < th dose dependent rect. 4 1
192 110.38 atmosphere 1015.0 30 < th dose dependent rect. 24 1
193 110.39 temperature 10.0 30 > th dose dependent rect. 4 1
194 110.39 humidity 50.0 30 > th dose dependent rect. 4 1
199 110.41 wind 7.0 1440 < th dose independent rect. 5 1
201 110.41 temperature 10.0 1440 > th dose independent rect. 5 1
204 110.41 temperature 30.0 1440 < th dose independent rect. 5 1
208 110.41 humidity 50.0 1440 > th dose independent rect. 5 1
217 110.41 atmosphere 995.0 1440 > th dose independent rect. 5 1
218 110.41 atmosphere 1015.0 1440 < th dose independent rect. 5 1
219 110.41 radiation 20.0 1440 < th dose independent rect. 5 1
228 110.41 temperature 10.0 1440 > th dose independent rect. 6 23
253 110.43 atmosphere 1015.0 30 < th dose dependent rect. 4 1
269 110.50 temperature 25.0 720 > th dose dependent rect. 5 3
274 110.59 atmosphere 995.0 30 > th dose independent rect. 5 23
275 110.60 precipitation 0.1 30 < th dose independent rect. 5 23
277 110.60 precipitation 0.1 30 < th dose dependent rect. 5 23
282 110.66 wind 9.0 30 < th dose independent rect. 5 23
286 110.69 wind 1.0 30 > th dose dependent rect. 24 1
326 111.50 temperature 25.0 720 > th dose independent rect. 5 3
331 111.56 temperature 30.0 30 < th dose dependent rect. 24 1
349 111.93 wind 9.0 30 < th dose independent rect. 1 23
364 112.35 temperature 20.0 30 > th dose dependent rect. 20 9
398 112.55 wind 9.0 1440 < th dose independent rect. 1 1
407 112.72 humidity 90.0 10 < th dose independent rect. 20 10
408 112.72 humidity 50.0 30 > th dose independent rect. 5 23
409 112.74 humidity 90.0 10 < th dose independent rect. 24 5
414 112.79 wind 1.0 90 > th dose independent rect. 19 10
437 113.11 temperature 10.0 90 > th dose dependent rect. 5 14
442 113.18 temperature 25.0 10 > th dose independent rect. 20 14
461 113.36 temperature 30.0 10 > th dose independent rect. 10 1
487 113.51 radiation 1.0 10 < th dose dependent rect. 4 10
497 113.58 temperature 25.0 10 > th dose independent sin 9 NA
512 113.62 temperature 30.0 30 < th dose independent rect. 5 23
524 113.65 radiation 1.0 10 < th dose dependent rect. 4 8
532 113.67 temperature 25.0 10 < th dose independent rect. 20 10
538 113.68 temperature 25.0 30 < th dose independent sin 10 NA
539 113.68 radiation 1.0 10 < th dose independent rect. 4 10
542 113.68 radiation 1.0 10 < th dose dependent rect. 4 4
548 113.68 radiation 1.0 90 < th dose dependent rect. 19 23
557 113.70 atmosphere 995.0 90 > th dose dependent rect. 5 14
560 113.71 temperature 30.0 720 < th dose independent rect. 17 12
567 113.72 temperature 25.0 270 < th dose independent rect. 19 11
584 113.77 temperature 25.0 30 > th dose dependent rect. 24 11
585 113.77 radiation 1.0 90 < th dose dependent rect. 3 23
590 113.78 radiation 1.0 90 < th dose independent rect. 19 23
612 113.82 radiation 1.0 10 < th dose independent rect. 4 8
614 113.82 temperature 10.0 720 > th dose dependent rect. 5 4
622 113.84 temperature 25.0 10 > th dose dependent rect. 6 5
624 113.85 radiation 1.0 10 < th dose independent rect. 4 4
632 113.87 atmosphere 1000.0 90 > th dose independent rect. 5 14
639 113.88 wind 1.0 30 > th dose independent rect. 4 12
664 113.94 humidity 90.0 10 < th dose independent rect. 9 21
675 113.95 temperature 25.0 30 < th dose independent rect. 18 13
693 113.96 precipitation 0.1 720 < th dose independent rect. 5 12
695 113.96 precipitation 0.1 720 < th dose dependent rect. 5 12
696 113.96 temperature 10.0 30 > th dose dependent rect. 5 23
705 113.98 humidity 50.0 720 > th dose independent rect. 17 8
732 114.02 atmosphere 995.0 90 > th dose dependent rect. 19 10
742 114.04 wind 9.0 720 < th dose independent rect. 17 12
749 114.05 atmosphere 995.0 30 > th dose independent rect. 1 23
756 114.06 wind 9.0 90 < th dose independent rect. 5 14
763 114.09 temperature 25.0 270 < th dose independent sin 12 NA
781 114.12 temperature 25.0 30 > th dose independent rect. 20 3
786 114.12 wind 7.0 90 < th dose independent rect. 19 10
793 114.13 humidity 90.0 10 < th dose independent rect. 22 8
804 114.15 humidity 90.0 720 < th dose independent rect. 24 1
807 114.15 atmosphere 1015.0 720 < th dose independent rect. 1 16
820 114.18 humidity 70.0 720 > th dose independent rect. 17 12
824 114.19 temperature 25.0 30 > th dose independent rect. 20 6
827 114.19 wind 9.0 720 < th dose independent rect. 17 8
828 114.19 radiation 20.0 720 < th dose independent rect. 17 8
830 114.19 temperature 25.0 90 > th dose independent rect. 5 14
837 114.20 precipitation 0.1 90 < th dose independent rect. 19 10
842 114.20 precipitation 0.1 90 < th dose dependent rect. 19 10
843 114.20 temperature 25.0 10 > th dose dependent rect. 16 19
848 114.21 temperature 25.0 30 > th dose dependent rect. 20 3
856 114.22 humidity 90.0 10 > th dose independent sin 7 NA
875 114.25 temperature 25.0 30 > th dose dependent rect. 20 6
882 114.25 temperature 25.0 30 > th dose dependent rect. 12 23
883 114.26 temperature 15.0 720 > th dose independent rect. 5 8
887 114.26 radiation 1.0 90 < th dose independent rect. 3 23
888 114.26 radiation 1.0 90 < th dose dependent rect. 19 12
894 114.27 temperature 10.0 90 > th dose independent rect. 19 10
896 114.27 humidity 50.0 90 > th dose independent rect. 19 10
898 114.27 atmosphere 995.0 90 > th dose independent rect. 19 10
899 114.27 radiation 20.0 90 < th dose independent rect. 19 10
902 114.27 radiation 20.0 720 < th dose independent rect. 17 12
904 114.27 temperature 10.0 90 > th dose independent rect. 5 14
905 114.27 atmosphere 1015.0 90 < th dose independent rect. 5 14
910 114.27 radiation 40.0 90 < th dose dependent rect. 19 10
920 114.28 radiation 20.0 90 < th dose dependent rect. 19 10
923 114.29 temperature 30.0 720 < th dose independent rect. 17 4
924 114.29 temperature 10.0 720 > th dose independent rect. 17 8
928 114.29 radiation 1.0 90 < th dose independent rect. 19 10
930 114.29 temperature 10.0 720 > th dose independent rect. 1 16
932 114.29 radiation 1.0 90 < th dose dependent rect. 7 22
939 114.30 atmosphere 995.0 720 > th dose independent rect. 5 12
941 114.30 precipitation 0.1 90 < th dose independent rect. 5 14
949 114.30 precipitation 0.1 90 < th dose dependent rect. 5 14
954 114.31 temperature 10.0 720 > th dose independent rect. 5 12
955 114.31 temperature 10.0 720 > th dose independent rect. 17 12
956 114.31 atmosphere 995.0 720 > th dose independent rect. 17 12
957 114.31 atmosphere 1015.0 720 < th dose independent rect. 5 12
975 114.33 temperature 25.0 10 > th dose independent rect. 22 12
976 114.33 humidity 50.0 720 > th dose independent rect. 17 12
978 114.33 humidity 90.0 10 < th dose independent rect. 7 23
982 114.33 radiation 40.0 720 < th dose dependent rect. 17 12
983 114.33 temperature 25.0 30 > th dose dependent rect. 14 21
988 114.34 precipitation 0.1 720 < th dose independent rect. 17 8
991 114.34 precipitation 0.1 720 < th dose dependent rect. 17 8