BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0177100 Os05g0177100|AK064652
(135 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0177100 Conserved hypothetical protein 255 7e-69
Os05g0175960 Cyclin-like F-box domain containing protein 144 2e-35
Os05g0177400 Cyclin-like F-box domain containing protein 135 9e-33
Os07g0535200 Cyclin-like F-box domain containing protein 99 1e-21
Os07g0535100 Cyclin-like F-box domain containing protein 97 3e-21
Os05g0175920 92 1e-19
Os07g0535700 Galactose oxidase, central domain containing p... 87 4e-18
Os07g0535300 Cyclin-like F-box domain containing protein 84 2e-17
Os05g0139200 Cyclin-like F-box domain containing protein 65 1e-11
>Os05g0177100 Conserved hypothetical protein
Length = 135
Score = 255 bits (651), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 125/135 (92%), Positives = 125/135 (92%)
Query: 1 MPQSLVEPFNGIGEGFIVLSQGSLYFVNSDHDKPYKVSVWVLEDYSSEQWIWKHTVSHLH 60
MPQSLVEPFNGIGEGFIVLSQGSLYFVNSDHDKPYKVSVWVLEDYSSEQWIWKHTVSHLH
Sbjct: 1 MPQSLVEPFNGIGEGFIVLSQGSLYFVNSDHDKPYKVSVWVLEDYSSEQWIWKHTVSHLH 60
Query: 61 LFQTKRLLFGHDYKVVSIHPERNNIFLVWPHSKMLMSYELDSREVHFICGIGGCEWVMXX 120
LFQTKRLLFGHDYKVVSIHPERNNIFLVWPHSKMLMSYELDSREVHFICGIGGCEWVM
Sbjct: 61 LFQTKRLLFGHDYKVVSIHPERNNIFLVWPHSKMLMSYELDSREVHFICGIGGCEWVMYY 120
Query: 121 XXXXXXXXESLADGH 135
ESLADGH
Sbjct: 121 LPYVPLYLESLADGH 135
>Os05g0175960 Cyclin-like F-box domain containing protein
Length = 381
Score = 144 bits (362), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 69/112 (61%), Positives = 88/112 (78%)
Query: 1 MPQSLVEPFNGIGEGFIVLSQGSLYFVNSDHDKPYKVSVWVLEDYSSEQWIWKHTVSHLH 60
MP++ V+P+ G+ +GFI +SQ L FVN+D D YK+SVWVLEDYSS+QW KHTVSHLH
Sbjct: 248 MPETFVDPYYGVDDGFIDVSQDCLCFVNTDRDDLYKLSVWVLEDYSSDQWTLKHTVSHLH 307
Query: 61 LFQTKRLLFGHDYKVVSIHPERNNIFLVWPHSKMLMSYELDSREVHFICGIG 112
LF T + FG+D KVVSIHP+RN IFLV + + +SYE+DSREVH+IC +G
Sbjct: 308 LFGTDKQHFGYDDKVVSIHPKRNIIFLVSLNDGIFISYEMDSREVHYICELG 359
>Os05g0177400 Cyclin-like F-box domain containing protein
Length = 351
Score = 135 bits (340), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 64/69 (92%), Positives = 68/69 (98%)
Query: 1 MPQSLVEPFNGIGEGFIVLSQGSLYFVNSDHDKPYKVSVWVLEDYSSEQWIWKHTVSHLH 60
MPQSLVEPF+GIGEGFI LSQGSLYFVN+DHD+PYKVSVWVLEDYSSEQWIWKHTVSHLH
Sbjct: 256 MPQSLVEPFDGIGEGFIGLSQGSLYFVNTDHDEPYKVSVWVLEDYSSEQWIWKHTVSHLH 315
Query: 61 LFQTKRLLF 69
LF+TKRLLF
Sbjct: 316 LFRTKRLLF 324
>Os07g0535200 Cyclin-like F-box domain containing protein
Length = 377
Score = 98.6 bits (244), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 47/98 (47%), Positives = 64/98 (65%)
Query: 15 GFIVLSQGSLYFVNSDHDKPYKVSVWVLEDYSSEQWIWKHTVSHLHLFQTKRLLFGHDYK 74
G I +QG L N D D +K+S+W+LEDY ++ WI KHTVS L LF K+ FG DY+
Sbjct: 258 GIIHQTQGRLCAFNVDPDDIFKLSIWILEDYDTDNWILKHTVSSLRLFGGKKYQFGFDYQ 317
Query: 75 VVSIHPERNNIFLVWPHSKMLMSYELDSREVHFICGIG 112
++ +HPE N IF V+ K LM+YE+D +EV I +G
Sbjct: 318 IIVVHPECNLIFFVYGWDKTLMAYEMDRKEVRVIRNLG 355
>Os07g0535100 Cyclin-like F-box domain containing protein
Length = 377
Score = 97.4 bits (241), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 46/98 (46%), Positives = 64/98 (65%)
Query: 15 GFIVLSQGSLYFVNSDHDKPYKVSVWVLEDYSSEQWIWKHTVSHLHLFQTKRLLFGHDYK 74
G I +QG L N D D +K+S+W+LEDY ++ WI KHTVS L LF + FG DY+
Sbjct: 258 GIIHQTQGRLCAFNVDPDDIFKLSIWILEDYDTDNWILKHTVSSLRLFGGMKYRFGFDYQ 317
Query: 75 VVSIHPERNNIFLVWPHSKMLMSYELDSREVHFICGIG 112
++++HPE N IF V+ K LM+YE+D +EV I +G
Sbjct: 318 IIAVHPECNLIFFVYGWDKTLMAYEMDRKEVRAIRNLG 355
>Os05g0175920
Length = 93
Score = 92.0 bits (227), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 45/74 (60%), Positives = 55/74 (74%), Gaps = 1/74 (1%)
Query: 1 MPQSLVEPFNGIGEGFIVLSQGSLYFVNSDHDKPYK-VSVWVLEDYSSEQWIWKHTVSHL 59
MPQ+L +P + +GF+ LSQG LYFVN+D Y +SVWVL+DYSS+QW KHTVSHL
Sbjct: 20 MPQTLDDPDCNVDDGFVDLSQGRLYFVNTDRYDLYNSLSVWVLQDYSSDQWTLKHTVSHL 79
Query: 60 HLFQTKRLLFGHDY 73
HLF +R FGHDY
Sbjct: 80 HLFGRRRKDFGHDY 93
>Os07g0535700 Galactose oxidase, central domain containing protein
Length = 335
Score = 86.7 bits (213), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 68/120 (56%), Gaps = 1/120 (0%)
Query: 15 GFIVLSQGSLYFVNSDHDKPYKVSVWVLEDYSSEQWIWKHTVSHLHLFQTKRLLFGHDYK 74
G I +QG L N D + ++S+W LEDY ++ WI KHTVS ++LF K+ DY+
Sbjct: 215 GIIHQTQGRLCAFNVDPNDILELSIWFLEDYDTDNWILKHTVSSINLFGRKKYQLDFDYQ 274
Query: 75 VVSIHPERNNIFLVWPHSKMLMSYELDSREVHFICGIGGCEWVMXXXXXXXXXXESLADG 134
V+++HPE N IF V+ LM+YE+D +EV I +G E + ESL DG
Sbjct: 275 VIAVHPECNLIFFVYGWHNTLMAYEMDRKEVRVIRKLGH-ESCLPYLPYVPMFSESLPDG 333
>Os07g0535300 Cyclin-like F-box domain containing protein
Length = 437
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 59/98 (60%)
Query: 15 GFIVLSQGSLYFVNSDHDKPYKVSVWVLEDYSSEQWIWKHTVSHLHLFQTKRLLFGHDYK 74
G I +QG L N D +K+S+W LEDY + WI KHTVS L LF+ K +Y+
Sbjct: 318 GIIHQTQGCLSAFNVDLLDIFKLSIWFLEDYDTNNWILKHTVSSLDLFEGKNYRLDFEYQ 377
Query: 75 VVSIHPERNNIFLVWPHSKMLMSYELDSREVHFICGIG 112
V+++HP+ N IF V+ LM+YE+D +EV I +G
Sbjct: 378 VIAVHPDCNLIFFVYGLDNTLMAYEMDRKEVRVIRNLG 415
>Os05g0139200 Cyclin-like F-box domain containing protein
Length = 399
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 59/109 (54%), Gaps = 3/109 (2%)
Query: 10 NGIGEGFIVLSQGSLYFVNSDHDKPYKVSVWVLEDYSSEQWIWKHTVSHLHLFQTKRLLF 69
NGI FI SQG LY++N +SVW L+DY S W +K+ +S LF +
Sbjct: 271 NGI-LAFIGQSQGHLYYINFRDWDSSILSVWTLDDYCSCGWSFKYNISTSQLFGWTNMKL 329
Query: 70 GHDYKVVSIHPERNNIFLVWPH--SKMLMSYELDSREVHFICGIGGCEW 116
+Y +++IHPE N IF V+ L+SY++D +V+ IC + W
Sbjct: 330 EREYSLIAIHPECNMIFYVFRDEGQNTLLSYDMDRGKVNSICNMRDPFW 378
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.139 0.462
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,627,341
Number of extensions: 168344
Number of successful extensions: 349
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 347
Number of HSP's successfully gapped: 9
Length of query: 135
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 45
Effective length of database: 12,336,541
Effective search space: 555144345
Effective search space used: 555144345
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 150 (62.4 bits)