BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0164800 Os05g0164800|AK103730
(395 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0164800 Similar to Zinc transporter 6, chloroplast pre... 525 e-149
Os03g0667300 Similar to Metal transport protein 136 3e-32
Os03g0667500 Similar to Metal transport protein 135 7e-32
Os07g0232800 Similar to Zinc transporter protein ZIP1 131 8e-31
Os04g0613000 Similar to Zinc transporter ZIP1 (Fragment) 130 2e-30
Os05g0472700 Similar to Metal transport protein 126 3e-29
Os05g0198400 Similar to Zinc transporter 4, chloroplast pre... 124 2e-28
Os08g0207500 Similar to Zinc transporter ZIP1 (Fragment) 120 2e-27
Os06g0566300 Similar to Zinc transporter 4, chloroplast pre... 76 5e-14
>Os05g0164800 Similar to Zinc transporter 6, chloroplast precursor (ZRT/IRT-like
protein 6)
Length = 395
Score = 525 bits (1351), Expect = e-149, Method: Compositional matrix adjust.
Identities = 282/395 (71%), Positives = 282/395 (71%)
Query: 1 MSGTGCFPAGEMAAVARVCRDGAAAARLKTGSLLAILVASAVGICLPVALTGAFRGKAGY 60
MSGTGCFPAGEMAAVARVCRDGAAAARLKTGSLLAILVASAVGICLPVALTGAFRGKAGY
Sbjct: 1 MSGTGCFPAGEMAAVARVCRDGAAAARLKTGSLLAILVASAVGICLPVALTGAFRGKAGY 60
Query: 61 ARGLLLVKCYAAGVILSTSLVHVLPDXXXXXXXXXXXTRRPWRDFPXXXXXXXXXXXXXX 120
ARGLLLVKCYAAGVILSTSLVHVLPD TRRPWRDFP
Sbjct: 61 ARGLLLVKCYAAGVILSTSLVHVLPDAHAALADCAVATRRPWRDFPFAGLFSLVGALLAL 120
Query: 121 XXXXXXXXHLXXXXXXXXXXXXXSXXXXXXXXXXXXXXXTTKKSPVFELSGEMSPKKRAH 180
HL S TTKKSPVFELSGEMSPKKRAH
Sbjct: 121 LVDLSASSHLEAHGHHQHAEEGESPPPPPPTHQPYAPIPTTKKSPVFELSGEMSPKKRAH 180
Query: 181 SDDTDRDDVALFGAKSAVRSDEVVVAPRXXXXXXXXXXXXXXXXXXXXXXXARRKQKMVS 240
SDDTDRDDVALFGAKSAVRSDEVVVAPR ARRKQKMVS
Sbjct: 181 SDDTDRDDVALFGAKSAVRSDEVVVAPRVGCHGHHDVVEVGEEGGGGEEEEARRKQKMVS 240
Query: 241 KVLEIGIVFHSVIIGVTMGMSQDVCAIRPLVVALSFHQVFEGMGLGGCIAQAGFGIATVG 300
KVLEIGIVFHSVIIGVTMGMSQDVCAIRPLVVALSFHQVFEGMGLGGCIAQAGFGIATVG
Sbjct: 241 KVLEIGIVFHSVIIGVTMGMSQDVCAIRPLVVALSFHQVFEGMGLGGCIAQAGFGIATVG 300
Query: 301 YMCVMFSVTTPLGILLGMAIFHMTGYDDSSPNAXXXXXXXXXXXXXXXVYMALVDLISLD 360
YMCVMFSVTTPLGILLGMAIFHMTGYDDSSPNA VYMALVDLISLD
Sbjct: 301 YMCVMFSVTTPLGILLGMAIFHMTGYDDSSPNALIIEGLLGSLSSGILVYMALVDLISLD 360
Query: 361 FFHXXXXXXXXXXXXXXYVALVLGSASMSILALWA 395
FFH YVALVLGSASMSILALWA
Sbjct: 361 FFHNKMMSSSNKLKKVSYVALVLGSASMSILALWA 395
>Os03g0667300 Similar to Metal transport protein
Length = 370
Score = 136 bits (342), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 74/161 (45%), Positives = 98/161 (60%), Gaps = 3/161 (1%)
Query: 235 KQKMVSKVLEIGIVFHSVIIGVTMGMSQDVCAIRPLVVALSFHQVFEGMGLGGCIAQAGF 294
+ +++ +VLE+GIV HSV+IG+ MG SQ+VC IRPLV AL FHQ+FEGMGLGGCI QAG+
Sbjct: 213 RNRVIVQVLEMGIVVHSVVIGLGMGASQNVCTIRPLVAALCFHQMFEGMGLGGCILQAGY 272
Query: 295 GIATVGYMCVMFSVTTPLGILLGMAIFHMTGYDDSSPNAXXXXXXXXXXXXXXXVYMALV 354
G T + FS TTP GI LG+A+ + Y DSSP A YMALV
Sbjct: 273 GGRTRSALVFFFSTTTPFGIALGLALTRV--YSDSSPTALVVVGLLNAASAGLLHYMALV 330
Query: 355 DLISLDFFHXXXXXXXXXXXXXXYVALVLGSASMSILALWA 395
+L++ DF +A++LG+ MS++A WA
Sbjct: 331 ELLAADFM-GPKLQGNVRLQLAASLAILLGAGGMSVMAKWA 370
>Os03g0667500 Similar to Metal transport protein
Length = 374
Score = 135 bits (339), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 73/162 (45%), Positives = 98/162 (60%), Gaps = 3/162 (1%)
Query: 234 RKQKMVSKVLEIGIVFHSVIIGVTMGMSQDVCAIRPLVVALSFHQVFEGMGLGGCIAQAG 293
R+ ++V +VLEIGIV HSV+IG+ MG SQ+VC IRPLV A+ FHQ+FEGMGLGGCI QA
Sbjct: 216 RRNRVVVQVLEIGIVVHSVVIGLGMGASQNVCTIRPLVAAMCFHQMFEGMGLGGCILQAE 275
Query: 294 FGIATVGYMCVMFSVTTPLGILLGMAIFHMTGYDDSSPNAXXXXXXXXXXXXXXXVYMAL 353
+G + FS TTP GI LG+A+ + Y D+SP A YMAL
Sbjct: 276 YGRRMRSVLVFFFSTTTPFGIALGLALTRV--YRDNSPTALIVVGLLNAASAGLLHYMAL 333
Query: 354 VDLISLDFFHXXXXXXXXXXXXXXYVALVLGSASMSILALWA 395
V+L++ DF ++A++LG+ MS++A WA
Sbjct: 334 VELLAADFM-GPKLQGNVRLQLAAFLAVLLGAGGMSVMAKWA 374
>Os07g0232800 Similar to Zinc transporter protein ZIP1
Length = 357
Score = 131 bits (330), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 71/161 (44%), Positives = 103/161 (63%), Gaps = 3/161 (1%)
Query: 235 KQKMVSKVLEIGIVFHSVIIGVTMGMSQDVCAIRPLVVALSFHQVFEGMGLGGCIAQAGF 294
+ +++S+VLE+GIV HSVIIG+++G SQ+ I+PLVVALSFHQ+FEGMGLGGCI QA F
Sbjct: 200 RHRVISQVLELGIVVHSVIIGISLGASQNPETIKPLVVALSFHQMFEGMGLGGCIVQAKF 259
Query: 295 GIATVGYMCVMFSVTTPLGILLGMAIFHMTGYDDSSPNAXXXXXXXXXXXXXXXVYMALV 354
+ ++ M + F +TTP+GI +G+ I + Y++SSP A +YMALV
Sbjct: 260 KVRSIVTMVLFFCLTTPVGIAVGVGISSV--YNESSPTALVVEGILNSVAAGILIYMALV 317
Query: 355 DLISLDFFHXXXXXXXXXXXXXXYVALVLGSASMSILALWA 395
DL++ DF + +A++ G+ MS+LA WA
Sbjct: 318 DLLAEDFMNPRVQSKGKLQLGIN-LAMLAGAGLMSMLAKWA 357
>Os04g0613000 Similar to Zinc transporter ZIP1 (Fragment)
Length = 364
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/161 (45%), Positives = 98/161 (60%), Gaps = 3/161 (1%)
Query: 235 KQKMVSKVLEIGIVFHSVIIGVTMGMSQDVCAIRPLVVALSFHQVFEGMGLGGCIAQAGF 294
+ K+VS+VLE+GI+ HSVIIGV++G S IRPLV ALSFHQ FEG+GLGGCI QA F
Sbjct: 207 RHKVVSQVLELGILVHSVIIGVSLGASVRPSTIRPLVGALSFHQFFEGVGLGGCIVQANF 266
Query: 295 GIATVGYMCVMFSVTTPLGILLGMAIFHMTGYDDSSPNAXXXXXXXXXXXXXXXVYMALV 354
+ M + FS+T P+GI+LG+AI + Y+ S A +YM+LV
Sbjct: 267 KVRATVIMAIFFSLTAPVGIVLGIAI--SSSYNVHSSTAFVVEGVFNSASAGILIYMSLV 324
Query: 355 DLISLDFFHXXXXXXXXXXXXXXYVALVLGSASMSILALWA 395
DL++ D F+ Y+AL LG+ MS+LA+WA
Sbjct: 325 DLLATD-FNNPKLQINTKLQLMAYLALFLGAGLMSMLAIWA 364
>Os05g0472700 Similar to Metal transport protein
Length = 353
Score = 126 bits (316), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 100/161 (62%), Gaps = 3/161 (1%)
Query: 235 KQKMVSKVLEIGIVFHSVIIGVTMGMSQDVCAIRPLVVALSFHQVFEGMGLGGCIAQAGF 294
+ +++S+VLE+G+V HS+IIG+++G S +RPLV AL+FHQ FEG+GLGGCI QA F
Sbjct: 196 RHRVISQVLELGVVVHSLIIGMSLGASDFPSTVRPLVPALTFHQFFEGIGLGGCIVQAKF 255
Query: 295 GIATVGYMCVMFSVTTPLGILLGMAIFHMTGYDDSSPNAXXXXXXXXXXXXXXXVYMALV 354
+ +V M + FS+TTP GI++G+ I + YD +SP A VYMALV
Sbjct: 256 RVRSVVTMALFFSLTTPAGIVVGIGISSV--YDANSPTALVVQGLLEAAAAGILVYMALV 313
Query: 355 DLISLDFFHXXXXXXXXXXXXXXYVALVLGSASMSILALWA 395
D+++ DF VAL+LG+ MS++A+WA
Sbjct: 314 DILAEDFMKTKVQRRGRLQLAMN-VALLLGAGLMSMIAIWA 353
>Os05g0198400 Similar to Zinc transporter 4, chloroplast precursor (ZRT/IRT-like
protein 4)
Length = 384
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/164 (44%), Positives = 96/164 (58%), Gaps = 3/164 (1%)
Query: 232 ARRKQKMVSKVLEIGIVFHSVIIGVTMGMSQDVCAIRPLVVALSFHQVFEGMGLGGCIAQ 291
A+ + +VS++LE+GIV HSVIIG+++G+S+ C IRPLV ALSFHQ FEG LGGCIAQ
Sbjct: 224 AQVRSVVVSQILEMGIVSHSVIIGLSLGVSRSPCTIRPLVAALSFHQFFEGFALGGCIAQ 283
Query: 292 AGFGIATVGYMCVMFSVTTPLGILLGMAIFHMTGYDDSSPNAXXXXXXXXXXXXXXXVYM 351
A F + M F++TTP GI G + Y+ +SP A +YM
Sbjct: 284 AQFKTLSAAIMACFFAITTPAGIAAGAGVASF--YNANSPRALVVEGILDSVSAGILIYM 341
Query: 352 ALVDLISLDFFHXXXXXXXXXXXXXXYVALVLGSASMSILALWA 395
+LVDLI+ DF Y+AL LG+ SMS LA+WA
Sbjct: 342 SLVDLIAADFL-GGKMTGSTRQQVMAYIALFLGALSMSSLAIWA 384
>Os08g0207500 Similar to Zinc transporter ZIP1 (Fragment)
Length = 396
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/161 (44%), Positives = 94/161 (58%), Gaps = 3/161 (1%)
Query: 235 KQKMVSKVLEIGIVFHSVIIGVTMGMSQDVCAIRPLVVALSFHQVFEGMGLGGCIAQAGF 294
+ ++VS+VLE+GI+ HSVIIGV++G S +IRPLV ALSFHQ FEG+GLGGCI QA F
Sbjct: 239 RHRVVSQVLELGILVHSVIIGVSLGASLRPSSIRPLVGALSFHQFFEGIGLGGCIVQANF 298
Query: 295 GIATVGYMCVMFSVTTPLGILLGMAIFHMTGYDDSSPNAXXXXXXXXXXXXXXXVYMALV 354
M FS+T P+GI LG+AI S+ A +YM+LV
Sbjct: 299 KAKATVIMATFFSLTAPVGIALGIAISSSYSKHSST--ALVVEGVFNSAAAGILIYMSLV 356
Query: 355 DLISLDFFHXXXXXXXXXXXXXXYVALVLGSASMSILALWA 395
DL++ D F+ Y+AL LG+ MS+LA+WA
Sbjct: 357 DLLAAD-FNNPKLQTNTKLQLAVYLALFLGAGMMSLLAIWA 396
>Os06g0566300 Similar to Zinc transporter 4, chloroplast precursor (ZRT/IRT-like
protein 4)
Length = 69
Score = 75.9 bits (185), Expect = 5e-14, Method: Composition-based stats.
Identities = 34/54 (62%), Positives = 45/54 (83%)
Query: 238 MVSKVLEIGIVFHSVIIGVTMGMSQDVCAIRPLVVALSFHQVFEGMGLGGCIAQ 291
++ K+LE+GIV HSVIIG+++G+SQ C I+PLV ALSFHQ FEG LGGCI++
Sbjct: 5 IIYKILELGIVSHSVIIGLSLGVSQSPCTIKPLVAALSFHQFFEGFALGGCISE 58
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.326 0.138 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,849,377
Number of extensions: 287252
Number of successful extensions: 885
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 869
Number of HSP's successfully gapped: 10
Length of query: 395
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 292
Effective length of database: 11,657,759
Effective search space: 3404065628
Effective search space used: 3404065628
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 157 (65.1 bits)