BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0551200 Os04g0551200|AK059248
(352 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0551200 Similar to Cytoplasmic malate dehydrogenase 702 0.0
Os10g0478200 Cytoplasmic malate dehydrogenase 520 e-148
AK108921 360 e-99
Os08g0562100 Similar to Sorghum chloroplast CM3 malate dehy... 233 2e-61
Os01g0829800 Similar to Malate dehydrogenase precursor (EC ... 74 2e-13
Os07g0630800 Similar to Nodule-enhanced malate dehydrogenase 72 5e-13
Os08g0434300 Similar to Malate dehydrogenase precursor (EC ... 70 2e-12
Os03g0773800 Similar to Malate dehydrogenase, glyoxysomal p... 69 7e-12
AK109028 66 4e-11
>Os04g0551200 Similar to Cytoplasmic malate dehydrogenase
Length = 352
Score = 702 bits (1812), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/352 (97%), Positives = 342/352 (97%)
Query: 1 MMSSNSLFQRLAKWCPWLLRDEPKKPVKVLVTGAAGQIGYAIVAMIARGLMLGADQPVVL 60
MMSSNSLFQRLAKWCPWLLRDEPKKPVKVLVTGAAGQIGYAIVAMIARGLMLGADQPVVL
Sbjct: 1 MMSSNSLFQRLAKWCPWLLRDEPKKPVKVLVTGAAGQIGYAIVAMIARGLMLGADQPVVL 60
Query: 61 HLLDLPVAANALNGVRMELIDAALPLLRGVVATSDEAEAFKGVNVAIVIGGWPRRDGMER 120
HLLDLPVAANALNGVRMELIDAALPLLRGVVATSDEAEAFKGVNVAIVIGGWPRRDGMER
Sbjct: 61 HLLDLPVAANALNGVRMELIDAALPLLRGVVATSDEAEAFKGVNVAIVIGGWPRRDGMER 120
Query: 121 KDLISKNVTIYKSQASALHQHAAPNCKVLVVANPANTNALVLKEFAPAIPAKNITCLTRL 180
KDLISKNVTIYKSQASALHQHAAPNCKVLVVANPANTNALVLKEFAPAIPAKNITCLTRL
Sbjct: 121 KDLISKNVTIYKSQASALHQHAAPNCKVLVVANPANTNALVLKEFAPAIPAKNITCLTRL 180
Query: 181 DHNRALGQVAEKLNVHVGDVKNAIIWGNHSSTQFPDASHATVSTDRGERPVRELIADEIW 240
DHNRALGQVAEKLNVHVGDVKNAIIWGNHSSTQFPDASHATVSTDRGERPVRELIADEIW
Sbjct: 181 DHNRALGQVAEKLNVHVGDVKNAIIWGNHSSTQFPDASHATVSTDRGERPVRELIADEIW 240
Query: 241 LREEFVTDVQQRGAAVIKARKQXXXXXXXXXXCDHMRDWILGTPKGTWVSMGVYSDGSYG 300
LREEFVTDVQQRGAAVIKARKQ CDHMRDWILGTPKGTWVSMGVYSDGSYG
Sbjct: 241 LREEFVTDVQQRGAAVIKARKQSSSLSAASAACDHMRDWILGTPKGTWVSMGVYSDGSYG 300
Query: 301 VPEGVFFSFPVTCEKGEWSVVQGLEIDDFARSKMETSATELKEEKSIAYEFL 352
VPEGVFFSFPVTCEKGEWSVVQGLEIDDFARSKMETSATELKEEKSIAYEFL
Sbjct: 301 VPEGVFFSFPVTCEKGEWSVVQGLEIDDFARSKMETSATELKEEKSIAYEFL 352
>Os10g0478200 Cytoplasmic malate dehydrogenase
Length = 332
Score = 520 bits (1338), Expect = e-148, Method: Compositional matrix adjust.
Identities = 236/329 (71%), Positives = 286/329 (86%)
Query: 24 KKPVKVLVTGAAGQIGYAIVAMIARGLMLGADQPVVLHLLDLPVAANALNGVRMELIDAA 83
K+P++VLVTGAAGQIGYA+V MIARG+MLGADQPV+LH+LD+P A +LNG++MEL+DAA
Sbjct: 3 KEPMRVLVTGAAGQIGYALVPMIARGVMLGADQPVILHMLDIPPATESLNGLKMELVDAA 62
Query: 84 LPLLRGVVATSDEAEAFKGVNVAIVIGGWPRRDGMERKDLISKNVTIYKSQASALHQHAA 143
PLL+G+VAT+D EA GVNVA+++GG+PR++GMERKD++SKNV+IYKSQASAL HAA
Sbjct: 63 FPLLKGIVATTDVVEACTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEAHAA 122
Query: 144 PNCKVLVVANPANTNALVLKEFAPAIPAKNITCLTRLDHNRALGQVAEKLNVHVGDVKNA 203
PNCKVLVVANPANTNAL+LKEFAP+IP KNITCLTRLDHNRALGQ++EKLNV V DVKNA
Sbjct: 123 PNCKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQISEKLNVQVTDVKNA 182
Query: 204 IIWGNHSSTQFPDASHATVSTDRGERPVRELIADEIWLREEFVTDVQQRGAAVIKARKQX 263
IIWGNHSSTQ+PD +HATV T GE+PVREL+AD+ WL EF++ VQQRGAA+IKARKQ
Sbjct: 183 IIWGNHSSTQYPDVNHATVKTPSGEKPVRELVADDEWLNTEFISTVQQRGAAIIKARKQS 242
Query: 264 XXXXXXXXXCDHMRDWILGTPKGTWVSMGVYSDGSYGVPEGVFFSFPVTCEKGEWSVVQG 323
CDH+RDW+LGTP+GT+VSMGVYSDGSYGVP G+ +SFPVTC GEW++VQG
Sbjct: 243 SALSAASSACDHIRDWVLGTPEGTFVSMGVYSDGSYGVPAGLIYSFPVTCSGGEWTIVQG 302
Query: 324 LEIDDFARSKMETSATELKEEKSIAYEFL 352
L ID+F+R KM+ +A EL EEK++AY L
Sbjct: 303 LPIDEFSRKKMDATAQELSEEKTLAYSCL 331
>AK108921
Length = 332
Score = 360 bits (924), Expect = e-99, Method: Compositional matrix adjust.
Identities = 171/327 (52%), Positives = 233/327 (71%), Gaps = 1/327 (0%)
Query: 25 KPVKVLVTGAAGQIGYAIVAMIARGLMLGADQPVVLHLLDLPVAANALNGVRMELIDAAL 84
+P++VLVTGAAGQI Y+++ IA G + G +QP++LH+ D+ A+ GV++EL D +L
Sbjct: 3 EPIRVLVTGAAGQIAYSLLYAIANGDVFGKNQPIILHMFDITPMLTAMGGVKLELEDCSL 62
Query: 85 PLLRGVVATSDEAEAFKGVNVAIVIGGWPRRDGMERKDLISKNVTIYKSQASALHQHAAP 144
PLL+ VV + ++ AFK ++VAI+ G PRR+GMERKDL+S NV I+K+Q AL +HA
Sbjct: 63 PLLKDVVVSDQDSIAFKDIDVAIMTGAMPRREGMERKDLLSANVRIFKAQGEALDKHARK 122
Query: 145 NCKVLVVANPANTNALVLKEFAPAIPAKNITCLTRLDHNRALGQVAEKLNVHVGDVKNAI 204
KVLVV NPANTN LVL ++AP+IP++N +CLTRLDHNRA QVA KL + VKN I
Sbjct: 123 TVKVLVVGNPANTNCLVLAKYAPSIPSENFSCLTRLDHNRAKAQVALKLGLTSDKVKNVI 182
Query: 205 IWGNHSSTQFPDASHATVSTDRG-ERPVRELIADEIWLREEFVTDVQQRGAAVIKARKQX 263
IWGNHSSTQFPD +HA V+ + G + E + DE W++ EF+ VQ+RGAA+I ARK
Sbjct: 183 IWGNHSSTQFPDLAHAQVTLNDGSNKGAYEALKDENWIKNEFIPCVQKRGAAIIAARKLS 242
Query: 264 XXXXXXXXXCDHMRDWILGTPKGTWVSMGVYSDGSYGVPEGVFFSFPVTCEKGEWSVVQG 323
CDHMRDW GT WVSMG+ SDGSYG+ +G+ +S+PV +W++VQG
Sbjct: 243 SAMSAAKAICDHMRDWWHGTSGDEWVSMGIISDGSYGIEKGLVYSYPVRIVNRKWTIVQG 302
Query: 324 LEIDDFARSKMETSATELKEEKSIAYE 350
L I+D+ARS M+ +A EL EE++ A++
Sbjct: 303 LAINDWARSLMDKTAQELIEERNDAFD 329
>Os08g0562100 Similar to Sorghum chloroplast CM3 malate dehydrogenase (NADP)
(Fragment)
Length = 433
Score = 233 bits (593), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 135/324 (41%), Positives = 182/324 (56%), Gaps = 6/324 (1%)
Query: 24 KKPVKVLVTGAAGQIGYAIVAMIARGLMLGADQPVVLHLLDLPVAANALNGVRMELIDAA 83
K V V V+GAAG I ++ +A G + G DQP+ L LL + AL GV MEL D+
Sbjct: 88 KSLVNVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSIQALEGVAMELEDSL 147
Query: 84 LPLLRGVVATSDEAEAFKGVNVAIVIGGWPRRDGMERKDLISKNVTIYKSQASALHQHAA 143
PLLR V D F+ A++IG PR GMER L+ N I+ Q AL+ A+
Sbjct: 148 YPLLREVSIGIDPYVVFEDAEWALLIGAKPRGPGMERSALLDINGQIFAEQGKALNSVAS 207
Query: 144 PNCKVLVVANPANTNALVLKEFAPAIPAKNITCLTRLDHNRALGQVAEKLNVHVGDVKNA 203
N KV+VV NP NTNAL+ + AP IPAKN LTRLD NRA Q+A K V V N
Sbjct: 208 RNVKVIVVGNPCNTNALICLKNAPNIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNM 267
Query: 204 IIWGNHSSTQFPDASHATVSTDRGERPVRELIADEIWLREEFVTDVQQRGAAVIKARKQX 263
IWGNHS+TQ PD +A ++ RPV+E+I D WL +EF VQ+RG +I+ +
Sbjct: 268 TIWGNHSTTQVPDFLNAKING----RPVKEVIKDTKWLEDEFTKTVQKRGGVLIQKWGRS 323
Query: 264 XXXXXXXXXCDHMRDWILGTPKGTWVSMGVYSDGS-YGVPEGVFFSFPVTCE-KGEWSVV 321
D +R + TP+G W S GVY+ G+ YG+ E + FS P + G++ +V
Sbjct: 324 SAASTAVSIVDAIRSLVNPTPEGDWFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGDYELV 383
Query: 322 QGLEIDDFARSKMETSATELKEEK 345
+ + +DDF +++ S EL EK
Sbjct: 384 KDVAMDDFLWERIKKSEAELLAEK 407
>Os01g0829800 Similar to Malate dehydrogenase precursor (EC 1.1.1.37)
Length = 396
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 112/243 (46%), Gaps = 27/243 (11%)
Query: 23 PKKPVKVLVTGAAGQIGYAIVAMIARGLMLGADQPVVLHLLDLPVAANALNGVRMELIDA 82
P+ KV V GAAG IG + +I ++ A LHL D+ AN + GV +L
Sbjct: 72 PEASYKVAVLGAAGGIGQPLGLLIKMSPLVSA-----LHLYDI---AN-VKGVAADLSHC 122
Query: 83 ALP-LLRGVVATSDEAEAFKGVNVAIVIGGWPRRDGMERKDLISKNVTIYKSQASALHQH 141
P + S+ A KGV+V ++ G PR+ GM R DL + N +I K+ A+ +
Sbjct: 123 NTPSQVLDFTGPSELANCLKGVDVVVIPAGVPRKPGMTRDDLFNINASIVKTLVEAVADN 182
Query: 142 AAPNCKVLVVANPANTN----ALVLKEFAPAIPAKNITCLTRLDHNRALGQVAEKLNVHV 197
P + +++NP N+ A VLK+ P K + +T LD RA +A+K N+ +
Sbjct: 183 -CPEAFIHIISNPVNSTVPIAAEVLKQKGVYNP-KKLFGVTTLDVVRANTFIAQKKNLKL 240
Query: 198 GDVKNAIIWGNHSSTQFPDASHATVSTDRGERPVRELIADEIWLREEFVTDVQQRGAAVI 257
DV ++ G+ T P S RP +E EE +Q G V+
Sbjct: 241 IDVDVPVVGGHAGITILPLLSKT--------RPSVTFTNEE---TEELTRRIQNAGTEVV 289
Query: 258 KAR 260
+A+
Sbjct: 290 EAK 292
>Os07g0630800 Similar to Nodule-enhanced malate dehydrogenase
Length = 404
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 92/338 (27%), Positives = 144/338 (42%), Gaps = 39/338 (11%)
Query: 28 KVLVTGAAGQIGYAIVAMIARGLMLGADQPVVLHLLDLPVAANALNGVRMELIDAALPL- 86
KV + GAAG IG + ++ ++ A LHL D+ AN ++GV +L P
Sbjct: 79 KVAILGAAGGIGQPLSLLVKMSPLVSA-----LHLYDI---AN-VDGVTADLGHCNTPAK 129
Query: 87 LRGVVATSDEAEAFKGVNVAIVIGGWPRRDGMERKDLISKNVTIYKSQASALHQHAAPNC 146
+ G + A GV+V ++ G PR+ GM R DL N I + A+ H AP
Sbjct: 130 VAGFTGKEELAGCLAGVDVVVIPAGVPRKPGMTRDDLFGINAGIVRELVEAVADH-APAA 188
Query: 147 KVLVVANPANTN----ALVLKEFAPAIPAKNITCLTRLDHNRALGQVAEKLNVHVGDVKN 202
V V++NP N+ A VLK P + + +T LD RA VAE + + DV
Sbjct: 189 LVHVISNPVNSTVPIAAEVLKRKGVYDP-RKLFGVTTLDVVRANTFVAEMKGLPLADVDV 247
Query: 203 AIIWGNHSSTQFPDASHATVSTDRGERPVRELIADEIWLREEFVTDVQQRGAAVIKARKQ 262
++ G+ ++T P S A RP +E+ E +Q G V++A+ +
Sbjct: 248 PVVGGHAAATILPLLSKA--------RPKTAFTDEEV---EALTRRIQNAGTEVVEAKAK 296
Query: 263 XXXXXXXXXXCDHMRDWILGTPKGTWVSMGVYSDGSY----GVPEGVFFSFPVTCEKG-- 316
++ + +G VY + SY VPE FF+ V +
Sbjct: 297 AGGGSATLSMAYAAARFLEASLRGLDGDADVY-ECSYVQCQAVPELPFFACRVKLGRDGV 355
Query: 317 EWSVVQGLE---IDDFARSKMETSATELKE--EKSIAY 349
E G E + +F +E +LK+ +K +AY
Sbjct: 356 EEVAAAGAELRGLTEFEARALEALKPQLKKSIDKGVAY 393
>Os08g0434300 Similar to Malate dehydrogenase precursor (EC 1.1.1.37)
Length = 356
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 113/245 (46%), Gaps = 31/245 (12%)
Query: 23 PKKPVKVLVTGAAGQIGYAIVAMIARGLMLGADQPVV--LHLLDLPVAANALNGVRMELI 80
P+ KV V GAAG IG + GL++ P+V LHL D+ AN + GV +L
Sbjct: 31 PEASYKVAVLGAAGGIGQPL------GLLIKM-SPLVSELHLYDI---AN-VKGVAADLS 79
Query: 81 DAALP-LLRGVVATSDEAEAFKGVNVAIVIGGWPRRDGMERKDLISKNVTIYKSQASALH 139
P + S+ A KGV+V ++ G PR+ GM R DL + N +I KS A+
Sbjct: 80 HCNTPSQVLDFTGPSELANCLKGVDVVVIPAGVPRKPGMTRDDLFNINASIVKSLVEAVA 139
Query: 140 QHAAPNCKVLVVANPANTN----ALVLKEFAPAIPAKNITCLTRLDHNRALGQVAEKLNV 195
+ P + +++NP N+ A VLK+ P K + +T LD RA VA+K N+
Sbjct: 140 DN-CPEAFIHIISNPVNSTVPIAAEVLKQKGVYNP-KKLFGVTTLDVVRANTFVAQKKNL 197
Query: 196 HVGDVKNAIIWGNHSSTQFPDASHATVSTDRGERPVRELIADEIWLREEFVTDVQQRGAA 255
+ DV ++ G+ T P S S DE E+ +Q G
Sbjct: 198 KLIDVDVPVVGGHAGITILPLLSKTMPSVT---------FTDE--ETEQLTKRIQNAGTE 246
Query: 256 VIKAR 260
V++A+
Sbjct: 247 VVEAK 251
>Os03g0773800 Similar to Malate dehydrogenase, glyoxysomal precursor (EC
1.1.1.37) (mbNAD-MDH)
Length = 354
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 87/333 (26%), Positives = 133/333 (39%), Gaps = 32/333 (9%)
Query: 28 KVLVTGAAGQIGYAIVAMIARGLMLGADQPVVLHLLDLPVAANALNGVRMELIDAALPLL 87
KV V GAAG IG + ++ ++ VLHL D+ V A ++
Sbjct: 44 KVAVLGAAGGIGQPLSLLMKLNPLVS-----VLHLYDVVNTPGVTADVSHMDTTA---VV 95
Query: 88 RGVVATSDEAEAFKGVNVAIVIGGWPRRDGMERKDLISKNVTIYKSQASALHQHAAPNCK 147
RG + + A G+++ I+ G PR+ GM R DL +KN I +S + + PN
Sbjct: 96 RGFLGPNQLEAALTGMDLVIIPAGLPRKPGMTRDDLFNKNAGIVRSLCEGVAK-CCPNAI 154
Query: 148 VLVVANPANTNALVLKEF---APAIPAKNITCLTRLDHNRALGQVAEKLNVHVGDVKNAI 204
V +++NP N+ + E A K + +T LD RA VAE L + DV +
Sbjct: 155 VNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTTLDVARANTFVAEVLGIDPKDVNVPV 214
Query: 205 IWGNHSSTQFPDASHATVSTDRGERPVRELIADEIWLREEFVTDVQQRGAAVIKARKQXX 264
+ G+ T P S P DEI +Q G V++A+
Sbjct: 215 VGGHAGVTILPLLSQV--------HPPCSFTPDEISY---LTKRIQNGGTEVVEAKAGAG 263
Query: 265 XXXXXXX-XCDHMRDWILGTPKGTWVSMGVYSDGSY---GVPEGVFFSFPVTCEK-GEWS 319
D L +G GV + SY V E FF+ V + G
Sbjct: 264 SATLSMAFAAAKFGDACLRAMRG---DAGVV-ECSYVASAVTELPFFATKVRLGRAGAEE 319
Query: 320 VVQGLEIDDFARSKMETSATELKEEKSIAYEFL 352
V+ ++DF R+ +E + EL E +F+
Sbjct: 320 VLPLGPLNDFERAGLEMAKKELMESIQKGIDFM 352
>AK109028
Length = 345
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 88/200 (44%), Gaps = 12/200 (6%)
Query: 25 KPVKVLVTGAAGQIGYAIVAMIARGLMLGADQPVVLHLLDLPVAANALNGVRMELIDAAL 84
K KV V GAAG IG + ++ P V L VA G + I++
Sbjct: 30 KERKVAVLGAAGGIGQPLSLLMKM-------NPQVSQLSLYDVAGTRGVGADVSHINSRA 82
Query: 85 PLLRGVVATSDEAEAFKGVNVAIVIGGWPRRDGMERKDLISKNVTIYKSQASALHQHAAP 144
+ +G + AEA KG ++ I+ G PR+ GM R DL N I K A +H P
Sbjct: 83 QV-KGYEGDAQLAEALKGCDLVIIPAGVPRKPGMTRDDLFKINAGIVKGLVEACGKH-CP 140
Query: 145 NCKVLVVANPANTNALVLKEFAPAIPA---KNITCLTRLDHNRALGQVAEKLNVHVGDVK 201
+ +++NP N+ + E + + + +T LD RA AEKL + VG V
Sbjct: 141 GAILNIISNPVNSTVPIAAEALKKMGVYDKRKVMGVTTLDVVRAKTFYAEKLGLDVGQVD 200
Query: 202 NAIIWGNHSSTQFPDASHAT 221
++ G+ T P S AT
Sbjct: 201 VPVVGGHAGITILPLFSQAT 220
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.134 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,135,062
Number of extensions: 436958
Number of successful extensions: 1051
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 1056
Number of HSP's successfully gapped: 9
Length of query: 352
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 250
Effective length of database: 11,709,973
Effective search space: 2927493250
Effective search space used: 2927493250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)