Os08g0562100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Sorghum chloroplast CM3 malate dehydrogenase (NADP) (Fragment).
FiT-DB / Search/ Help/ Sample detail
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Os08g0562100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Sorghum chloroplast CM3 malate dehydrogenase (NADP) (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.9 | 0.225 | 13.7 | -0.00753 | 0.249 | -0.513 | -0.329 | -0.398 | -0.292 | 23.2 | 71.17 | 1145 | -- | -- |
| 23.05 | 0.224 | 13.7 | -0.0392 | 0.228 | -0.542 | -0.227 | -- | -0.3 | 23.5 | 73.26 | 1096 | -- | -- |
| 23.25 | 0.225 | 13.6 | -0.00501 | 0.244 | -0.534 | -- | -0.113 | -0.288 | 23.6 | 73 | 1103 | -- | -- |
| 23.26 | 0.225 | 13.7 | -0.0224 | 0.227 | -0.55 | -- | -- | -0.298 | 23.8 | 73.87 | 1089 | -- | -- |
| 25.19 | 0.234 | 13.6 | -0.028 | -- | -0.71 | -- | 0.0511 | -0.306 | -- | 73.03 | 996 | -- | -- |
| 26.99 | 0.244 | 13.6 | -0.0529 | 0.369 | -- | -0.185 | -- | -0.244 | 23.7 | -- | -- | -- | -- |
| 27.14 | 0.244 | 13.6 | -0.0456 | 0.37 | -- | -- | -- | -0.243 | 23.8 | -- | -- | -- | -- |
| 25.17 | 0.234 | 13.6 | -0.0159 | -- | -0.713 | -- | -- | -0.31 | -- | 73.03 | 995 | -- | -- |
| 23.27 | 0.225 | 13.6 | -- | 0.223 | -0.545 | -- | -- | -0.294 | 23.8 | 74.05 | 1079 | -- | -- |
| 35.73 | 0.279 | 13.6 | -0.0348 | -- | -- | -- | -- | -0.238 | -- | -- | -- | -- | -- |
| 27.19 | 0.244 | 13.6 | -- | 0.369 | -- | -- | -- | -0.238 | 23.8 | -- | -- | -- | -- |
| 25.18 | 0.234 | 13.6 | -- | -- | -0.715 | -- | -- | -0.308 | -- | 73.32 | 995 | -- | -- |
| 35.77 | 0.279 | 13.6 | -- | -- | -- | -- | -- | -0.234 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.64 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 8 | 7 |
| 2 | 21.72 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 8 | 7 |
| 10 | 21.92 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 3 | 13 |
| 12 | 21.94 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 23 | 17 |
| 17 | 21.97 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 4 | 11 |
| 72 | 22.13 | humidity | 80.0 | 1440 | > th | dose independent | sin | 3 | NA |
| 77 | 22.16 | humidity | 80.0 | 1440 | < th | dose independent | sin | 3 | NA |
| 119 | 22.36 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 134 | 22.41 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 23 | 17 |
| 142 | 22.45 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 3 | 13 |
| 174 | 22.55 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 10 |
| 191 | 22.60 | humidity | 70.0 | 1440 | > th | dose dependent | sin | 3 | NA |
| 263 | 22.78 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 416 | 23.02 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 456 | 23.07 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 3 |
| 461 | 23.07 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 3 |
| 476 | 23.09 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 3 |
| 483 | 23.10 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 489 | 23.10 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 494 | 23.10 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 7 | 23 |
| 523 | 23.13 | humidity | 70.0 | 1440 | > th | dose dependent | no | NA | NA |
| 530 | 23.13 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 2 | 23 |
| 534 | 23.14 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 8 | 17 |
| 549 | 23.14 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 5 | 23 |
| 566 | 23.15 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 13 | 2 |
| 576 | 23.16 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 8 | 18 |
| 585 | 23.16 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 8 | 21 |
| 593 | 23.16 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 607 | 23.17 | humidity | 80.0 | 1440 | > th | dose independent | no | NA | NA |
| 608 | 23.17 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 639 | 23.17 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 691 | 23.20 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 726 | 23.22 | humidity | 80.0 | 1440 | < th | dose independent | no | NA | NA |
| 750 | 23.23 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 3 |
| 778 | 23.25 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 821 | 23.28 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 7 | 8 |
| 834 | 23.29 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 861 | 23.31 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 875 | 23.32 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 6 | 11 |
| 893 | 23.33 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 911 | 23.34 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 6 | 11 |