Os10g0478200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cytoplasmic malate dehydrogenase.
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Os10g0478200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cytoplasmic malate dehydrogenase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.82 | 0.214 | 15 | 0.671 | 0.635 | -0.347 | -0.303 | -0.673 | 0.39 | 13.3 | 25 | 264 | -- | -- |
| 21.32 | 0.215 | 15 | 0.57 | 0.624 | -0.286 | -0.149 | -- | 0.363 | 13.3 | 26.07 | 226 | -- | -- |
| 21.1 | 0.214 | 15 | 0.671 | 0.656 | -0.335 | -- | -0.688 | 0.389 | 13.3 | 24.65 | 382 | -- | -- |
| 21.45 | 0.216 | 15 | 0.553 | 0.624 | -0.298 | -- | -- | 0.359 | 13.2 | 26.15 | 236 | -- | -- |
| 37.01 | 0.285 | 15 | 0.449 | -- | -0.974 | -- | -0.161 | 0.287 | -- | 55.72 | 2 | -- | -- |
| 22.6 | 0.223 | 15 | 0.635 | 0.674 | -- | -0.184 | -- | 0.426 | 13.5 | -- | -- | -- | -- |
| 22.74 | 0.223 | 15 | 0.629 | 0.674 | -- | -- | -- | 0.425 | 13.5 | -- | -- | -- | -- |
| 37.03 | 0.285 | 15 | 0.427 | -- | -0.978 | -- | -- | 0.281 | -- | 55.72 | 2 | -- | -- |
| 22.19 | 0.219 | 15 | -- | 0.683 | -0.538 | -- | -- | 0.207 | 13.5 | 24.69 | 47520 | -- | -- |
| 50.58 | 0.332 | 15 | 0.602 | -- | -- | -- | -- | 0.41 | -- | -- | -- | -- | -- |
| 33.16 | 0.269 | 15 | -- | 0.662 | -- | -- | -- | 0.355 | 13.4 | -- | -- | -- | -- |
| 41.56 | 0.3 | 15 | -- | -- | -1.1 | -- | -- | 0.218 | -- | 78.95 | 2 | -- | -- |
| 60.14 | 0.362 | 15 | -- | -- | -- | -- | -- | 0.343 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.59 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 19 | 19 |
| 12 | 18.05 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 22 | 18 |
| 29 | 18.19 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 19 | 7 |
| 57 | 18.65 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 21 | 8 |
| 60 | 18.68 | wind | 1.0 | 270 | > th | dose independent | rect. | 2 | 17 |
| 80 | 18.79 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 24 | 9 |
| 92 | 18.86 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 20 | 14 |
| 106 | 18.90 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 15 | 15 |
| 108 | 18.90 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 15 | 15 |
| 112 | 18.92 | radiation | 40.0 | 270 | < th | dose independent | rect. | 15 | 15 |
| 119 | 18.94 | temperature | 20.0 | 90 | > th | dose independent | rect. | 21 | 19 |
| 127 | 18.96 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 15 | 4 |
| 128 | 18.96 | humidity | 50.0 | 270 | > th | dose independent | rect. | 19 | 20 |
| 129 | 18.96 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 15 | 4 |
| 133 | 18.97 | radiation | 40.0 | 270 | < th | dose independent | rect. | 15 | 4 |
| 134 | 18.97 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 9 |
| 135 | 18.97 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 6 | 9 |
| 136 | 18.97 | temperature | 10.0 | 270 | > th | dose independent | rect. | 15 | 15 |
| 137 | 18.98 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 9 |
| 141 | 18.99 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 9 |
| 143 | 18.99 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 9 |
| 146 | 19.00 | wind | 1.0 | 270 | > th | dose independent | rect. | 15 | 4 |
| 147 | 19.00 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 9 |
| 153 | 19.01 | temperature | 10.0 | 270 | > th | dose independent | rect. | 15 | 4 |
| 155 | 19.01 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 15 | 4 |
| 157 | 19.01 | wind | 9.0 | 270 | < th | dose independent | rect. | 19 | 20 |
| 158 | 19.01 | temperature | 10.0 | 270 | > th | dose independent | rect. | 19 | 20 |
| 162 | 19.02 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 19 | 20 |
| 178 | 19.07 | humidity | 50.0 | 270 | > th | dose independent | rect. | 6 | 9 |
| 179 | 19.07 | wind | 9.0 | 270 | < th | dose independent | rect. | 15 | 15 |
| 188 | 19.09 | wind | 9.0 | 270 | < th | dose independent | rect. | 15 | 4 |
| 196 | 19.11 | temperature | 20.0 | 10 | > th | dose independent | rect. | 22 | 18 |
| 197 | 19.11 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 19 | 20 |
| 199 | 19.11 | radiation | 20.0 | 43200 | < th | dose dependent | rect. | 21 | 7 |
| 200 | 19.11 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 19 | 20 |
| 204 | 19.12 | humidity | 50.0 | 10 | > th | dose independent | rect. | 22 | 18 |
| 211 | 19.14 | radiation | 30.0 | 270 | < th | dose independent | rect. | 16 | 1 |
| 216 | 19.14 | humidity | 50.0 | 10 | > th | dose independent | rect. | 20 | 20 |
| 219 | 19.15 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 16 | 1 |
| 220 | 19.15 | radiation | 1.0 | 270 | > th | dose independent | rect. | 6 | 9 |
| 228 | 19.15 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 16 | 1 |
| 259 | 19.17 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 17 |
| 264 | 19.17 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 17 |
| 268 | 19.18 | temperature | 10.0 | 270 | > th | dose independent | rect. | 16 | 1 |
| 270 | 19.18 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 16 | 1 |
| 277 | 19.18 | temperature | 10.0 | 270 | > th | dose independent | rect. | 17 | 23 |
| 302 | 19.21 | wind | 9.0 | 90 | < th | dose independent | rect. | 21 | 19 |
| 307 | 19.22 | radiation | 30.0 | 10 | < th | dose dependent | rect. | 16 | 4 |
| 311 | 19.23 | wind | 1.0 | 270 | > th | dose independent | rect. | 16 | 1 |
| 340 | 19.24 | radiation | 10.0 | 10 | < th | dose independent | rect. | 16 | 4 |
| 350 | 19.25 | wind | 9.0 | 270 | < th | dose independent | rect. | 16 | 1 |
| 353 | 19.25 | temperature | 20.0 | 10 | > th | dose independent | rect. | 16 | 4 |
| 381 | 19.27 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 15 | 4 |
| 404 | 19.29 | temperature | 10.0 | 270 | > th | dose independent | rect. | 19 | 7 |
| 405 | 19.29 | temperature | 30.0 | 270 | < th | dose independent | rect. | 19 | 7 |
| 406 | 19.29 | humidity | 50.0 | 270 | > th | dose independent | rect. | 19 | 7 |
| 407 | 19.29 | humidity | 80.0 | 90 | > th | dose independent | rect. | 20 | 7 |
| 408 | 19.29 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 19 | 7 |
| 409 | 19.29 | radiation | 1.0 | 270 | < th | dose independent | rect. | 19 | 7 |
| 414 | 19.29 | temperature | 10.0 | 270 | > th | dose independent | rect. | 2 | 17 |
| 415 | 19.29 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 2 | 17 |
| 423 | 19.29 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 15 | 6 |
| 424 | 19.29 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 19 | 7 |
| 434 | 19.30 | wind | 1.0 | 10 | > th | dose independent | rect. | 16 | 6 |
| 439 | 19.30 | wind | 9.0 | 10 | < th | dose independent | rect. | 22 | 18 |
| 440 | 19.30 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 19 | 20 |
| 442 | 19.30 | wind | 1.0 | 270 | > th | dose dependent | rect. | 15 | 4 |
| 460 | 19.31 | wind | 9.0 | 270 | < th | dose independent | rect. | 19 | 7 |
| 461 | 19.31 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 19 | 7 |
| 463 | 19.31 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 21 | 8 |
| 469 | 19.31 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 19 | 7 |
| 476 | 19.32 | wind | 9.0 | 10 | < th | dose independent | rect. | 16 | 6 |
| 477 | 19.32 | temperature | 10.0 | 10 | > th | dose independent | rect. | 16 | 6 |
| 479 | 19.32 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 16 | 6 |
| 481 | 19.32 | radiation | 30.0 | 10 | < th | dose independent | rect. | 16 | 6 |
| 497 | 19.32 | temperature | 10.0 | 10 | > th | dose independent | rect. | 22 | 18 |
| 509 | 19.33 | humidity | 50.0 | 10 | > th | dose independent | rect. | 9 | 7 |
| 541 | 19.34 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 21 | 7 |
| 555 | 19.36 | humidity | 90.0 | 270 | < th | dose independent | rect. | 16 | 1 |
| 558 | 19.36 | wind | 1.0 | 270 | > th | dose independent | rect. | 19 | 7 |
| 559 | 19.36 | wind | 1.0 | 270 | > th | dose independent | rect. | 15 | 15 |
| 566 | 19.37 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 16 | 1 |
| 567 | 19.37 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 17 | 4 |
| 570 | 19.37 | humidity | 50.0 | 30 | > th | dose independent | rect. | 16 | 4 |
| 571 | 19.37 | radiation | 30.0 | 1440 | < th | dose independent | rect. | 17 | 4 |
| 587 | 19.37 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 21 | 20 |
| 592 | 19.37 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 15 | 4 |
| 594 | 19.37 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 8 |
| 622 | 19.39 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 21 | 7 |
| 625 | 19.39 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 21 | 7 |
| 629 | 19.39 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 21 | 7 |
| 635 | 19.39 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 21 | 7 |
| 656 | 19.39 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 4 | 17 |
| 661 | 19.39 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 16 | 1 |
| 680 | 19.40 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 22 | 18 |
| 683 | 19.40 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 21 | 19 |
| 694 | 19.41 | humidity | 90.0 | 270 | < th | dose independent | rect. | 15 | 3 |
| 703 | 19.41 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 22 | 18 |
| 705 | 19.41 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 9 | 7 |
| 718 | 19.42 | wind | 9.0 | 270 | < th | dose independent | rect. | 2 | 17 |
| 720 | 19.42 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 16 | 1 |
| 741 | 19.43 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 16 | 1 |
| 747 | 19.43 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 20 | 7 |
| 767 | 19.44 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 3 | 17 |
| 793 | 19.45 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 16 | 6 |
| 794 | 19.45 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 15 | 15 |
| 796 | 19.45 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 15 | 3 |
| 818 | 19.47 | wind | 9.0 | 30 | < th | dose independent | rect. | 9 | 7 |
| 844 | 19.48 | temperature | 10.0 | 10 | > th | dose independent | rect. | 9 | 7 |
| 846 | 19.48 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 9 | 7 |
| 847 | 19.48 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 9 | 7 |
| 862 | 19.48 | wind | 9.0 | 30 | < th | dose independent | rect. | 16 | 17 |
| 863 | 19.48 | temperature | 10.0 | 10 | > th | dose independent | rect. | 16 | 17 |
| 881 | 19.48 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 9 | 7 |
| 916 | 19.49 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 3 | 17 |
| 923 | 19.50 | humidity | 50.0 | 10 | > th | dose independent | rect. | 16 | 17 |