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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0551200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Cytoplasmic malate dehydrogenase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.53 (0.0854) R2 : 0.514
β1 : -7.9 (0.587) R2dD : 1.6 R2D : -0.115
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.77 (0.27) R2dE : 0.377 R2E : -0.27
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -13.9 (2.11) R2dD*E : 0.427 R2D*E : -1.11
γ1 : -1.25 (0.198) R2dN8 : 0.15 R2N8 : -0.213
σ : 1.06
deviance : 518.57
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 24.67
memory length : 1404
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 21.1
open length of G : 1.1

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
507.23 1.06 5.53 -8.01 0.48 2.75 0.536 -14.4 -1.25 5.87 24.8 1419 21 0.913
557.61 1.1 5.31 -6.34 0.542 2.59 0.635 -- -1.19 5.78 15.07 25173 21.1 1.03
507.14 1.05 5.53 -7.9 0.485 2.68 -- -13.7 -1.24 6.08 24.7 1414 21.1 0.899
544.62 1.09 5.28 -5.65 0.29 2.37 -- -- -1.11 5.71 16.67 13680 21.9 0.0139
518.57 1.06 5.53 -7.9 -- 2.77 -- -13.9 -1.25 -- 24.67 1404 21.1 1.1
628.71 1.18 5.05 -3.92 0.653 -- 0.567 -- -0.0172 5.21 -- -- -- --
629.5 1.17 5.05 -3.92 0.657 -- -- -- -0.0197 5.31 -- -- -- --
551.3 1.09 5.27 -5.67 -- 2.43 -- -- -1.02 -- 15.37 13628 21.9 0.0167
843.23 1.35 4.81 -- 0.646 -2.14 -- -- 1.09 4.75 12.43 47520 1.6 1.43
652.06 1.19 5.06 -3.9 -- -- -- -- -0.00332 -- -- -- -- --
1034.55 1.5 4.96 -- 0.592 -- -- -- 0.417 5.56 -- -- -- --
864.61 1.37 4.82 -- -- -2.15 -- -- 1.05 -- 7.549 47520 1.88 0.0333
1052.79 1.51 4.97 -- -- -- -- -- 0.429 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 487.42 temperature 30 14400 > th dose independent rect. 12 1
2 487.57 temperature 30 14400 < th dose independent rect. 12 1
3 489.46 temperature 30 14400 < th dose independent rect. 11 3
9 490.26 temperature 25 14400 < th dose independent rect. 23 9
10 490.30 temperature 25 14400 > th dose independent rect. 23 1
11 490.38 temperature 25 14400 > th dose independent rect. 23 10
21 491.53 temperature 25 14400 < th dose independent rect. 23 2
28 491.88 temperature 25 43200 > th dose independent rect. 4 5
36 492.21 temperature 25 43200 < th dose independent rect. 4 5
39 492.38 temperature 25 14400 < th dose independent rect. 22 5
40 492.39 temperature 30 43200 > th dose independent rect. 15 4
54 492.39 temperature 30 43200 < th dose independent rect. 15 16
56 492.40 temperature 30 43200 < th dose independent rect. 15 14
59 492.41 temperature 30 43200 < th dose independent rect. 15 12
61 492.42 temperature 30 43200 < th dose independent rect. 15 4
63 492.42 temperature 30 43200 < th dose independent rect. 15 7
65 492.42 temperature 30 43200 < th dose independent rect. 15 10
73 492.46 temperature 25 43200 > th dose independent rect. 6 2
75 492.48 temperature 25 43200 < th dose independent rect. 6 2
95 492.74 temperature 25 14400 > th dose independent rect. 21 6
98 492.76 temperature 30 43200 > th dose independent sin 14 NA
100 492.77 temperature 30 43200 < th dose independent sin 14 NA
173 493.18 temperature 25 43200 > th dose dependent rect. 8 1
184 493.42 temperature 30 14400 < th dose independent rect. 18 21
237 493.57 temperature 30 14400 > th dose independent rect. 18 21
239 493.61 temperature 25 43200 > th dose dependent rect. 18 1
257 493.65 temperature 30 14400 < th dose independent rect. 21 18
258 493.66 temperature 30 14400 < th dose independent rect. 2 13
259 493.66 temperature 30 14400 < th dose independent rect. 24 15
267 493.68 temperature 30 14400 < th dose independent rect. 4 11
273 493.69 temperature 30 14400 < th dose independent rect. 6 9
375 494.35 temperature 25 43200 > th dose dependent rect. 4 7
436 494.47 temperature 25 14400 > th dose dependent sin 11 NA
440 494.49 temperature 30 14400 < th dose independent sin 2 NA
529 494.70 temperature 25 43200 > th dose dependent rect. 17 18
585 494.82 temperature 25 43200 > th dose dependent rect. 17 5
601 494.85 temperature 30 14400 > th dose independent sin 1 NA
615 494.88 temperature 30 43200 < th dose independent no NA NA
624 494.88 temperature 30 43200 < th dose independent rect. 4 15
627 494.88 temperature 30 43200 < th dose independent rect. 2 17
632 494.88 temperature 30 43200 < th dose independent rect. 4 18
637 494.88 temperature 30 43200 < th dose independent rect. 2 20
644 494.88 temperature 30 43200 < th dose independent rect. 4 21
663 494.89 temperature 30 43200 < th dose independent rect. 6 13
730 494.93 temperature 25 14400 > th dose dependent rect. 17 14
791 495.05 temperature 30 43200 > th dose independent no NA NA
909 495.07 temperature 30 14400 > th dose dependent rect. 14 1