BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0551200 Os04g0551200|AK059248
(352 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G43330.1 | chr5:17390552-17392449 FORWARD LENGTH=333 511 e-145
AT1G04410.1 | chr1:1189418-1191267 REVERSE LENGTH=333 505 e-143
AT5G56720.1 | chr5:22945537-22946718 FORWARD LENGTH=340 471 e-133
AT5G58330.1 | chr5:23580010-23582287 REVERSE LENGTH=444 256 2e-68
AT3G47520.1 | chr3:17513657-17514868 FORWARD LENGTH=404 77 2e-14
AT2G22780.1 | chr2:9689995-9691923 REVERSE LENGTH=355 67 1e-11
AT5G09660.4 | chr5:2993691-2995551 REVERSE LENGTH=364 64 1e-10
>AT5G43330.1 | chr5:17390552-17392449 FORWARD LENGTH=333
Length = 332
Score = 511 bits (1316), Expect = e-145, Method: Compositional matrix adjust.
Identities = 235/329 (71%), Positives = 283/329 (86%)
Query: 24 KKPVKVLVTGAAGQIGYAIVAMIARGLMLGADQPVVLHLLDLPVAANALNGVRMELIDAA 83
K+PV+VLVTGAAGQIGYA+V MIARG+MLGADQPV+LH+LD+P AA ALNGV+MEL+DAA
Sbjct: 3 KEPVRVLVTGAAGQIGYALVPMIARGIMLGADQPVILHMLDIPFAAEALNGVKMELVDAA 62
Query: 84 LPLLRGVVATSDEAEAFKGVNVAIVIGGWPRRDGMERKDLISKNVTIYKSQASALHQHAA 143
PLL+GVVAT+D EA GVNVA+++GG+PR++GMERKD++SKNV+IYKSQASAL +HAA
Sbjct: 63 FPLLKGVVATTDAVEACTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKHAA 122
Query: 144 PNCKVLVVANPANTNALVLKEFAPAIPAKNITCLTRLDHNRALGQVAEKLNVHVGDVKNA 203
PNCKVLVVANPANTNAL+LKEFAP+IP KNITCLTRLDHNRALGQV+E+L+V V DVKN
Sbjct: 123 PNCKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQVSERLSVPVSDVKNV 182
Query: 204 IIWGNHSSTQFPDASHATVSTDRGERPVRELIADEIWLREEFVTDVQQRGAAVIKARKQX 263
IIWGNHSSTQ+PD +HATV T GE+PVREL+ ++ WL EF++ VQQRGAA+IKARK
Sbjct: 183 IIWGNHSSTQYPDVNHATVKTSVGEKPVRELVKNDEWLNGEFISTVQQRGAAIIKARKLS 242
Query: 264 XXXXXXXXXCDHMRDWILGTPKGTWVSMGVYSDGSYGVPEGVFFSFPVTCEKGEWSVVQG 323
CDH+RDW++GTP+GT+VSMGVYSDGSY VP G+ +SFPVTC GEW++VQG
Sbjct: 243 SALSAASSACDHIRDWVVGTPEGTFVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQG 302
Query: 324 LEIDDFARSKMETSATELKEEKSIAYEFL 352
L IDD +R KM+ +A ELKEEK +AY L
Sbjct: 303 LPIDDASRKKMDLTAEELKEEKDLAYSCL 331
>AT1G04410.1 | chr1:1189418-1191267 REVERSE LENGTH=333
Length = 332
Score = 505 bits (1301), Expect = e-143, Method: Compositional matrix adjust.
Identities = 231/329 (70%), Positives = 281/329 (85%)
Query: 24 KKPVKVLVTGAAGQIGYAIVAMIARGLMLGADQPVVLHLLDLPVAANALNGVRMELIDAA 83
K+PV+VLVTGAAGQIGYA+V MIARG+MLGADQPV+LH+LD+P AA ALNGV+MELIDAA
Sbjct: 3 KEPVRVLVTGAAGQIGYALVPMIARGIMLGADQPVILHMLDIPPAAEALNGVKMELIDAA 62
Query: 84 LPLLRGVVATSDEAEAFKGVNVAIVIGGWPRRDGMERKDLISKNVTIYKSQASALHQHAA 143
PLL+GVVAT+D E GVNVA+++GG+PR++GMERKD++SKNV+IYKSQA+AL +HAA
Sbjct: 63 FPLLKGVVATTDAVEGCTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQAAALEKHAA 122
Query: 144 PNCKVLVVANPANTNALVLKEFAPAIPAKNITCLTRLDHNRALGQVAEKLNVHVGDVKNA 203
PNCKVLVVANPANTNAL+LKEFAP+IP KNI+CLTRLDHNRALGQ++E+L+V V DVKN
Sbjct: 123 PNCKVLVVANPANTNALILKEFAPSIPEKNISCLTRLDHNRALGQISERLSVPVSDVKNV 182
Query: 204 IIWGNHSSTQFPDASHATVSTDRGERPVRELIADEIWLREEFVTDVQQRGAAVIKARKQX 263
IIWGNHSS+Q+PD +HA V T GE+PVREL+ D+ WL EF++ VQQRGAA+IKARK
Sbjct: 183 IIWGNHSSSQYPDVNHAKVQTSSGEKPVRELVKDDAWLDGEFISTVQQRGAAIIKARKLS 242
Query: 264 XXXXXXXXXCDHMRDWILGTPKGTWVSMGVYSDGSYGVPEGVFFSFPVTCEKGEWSVVQG 323
CDH+RDW+LGTP+GT+VSMGVYSDGSY VP G+ +SFPVTC G+WS+VQG
Sbjct: 243 SALSAASSACDHIRDWVLGTPEGTFVSMGVYSDGSYSVPSGLIYSFPVTCRNGDWSIVQG 302
Query: 324 LEIDDFARSKMETSATELKEEKSIAYEFL 352
L ID+ +R KM+ +A ELKEEK +AY L
Sbjct: 303 LPIDEVSRKKMDLTAEELKEEKDLAYSCL 331
>AT5G56720.1 | chr5:22945537-22946718 FORWARD LENGTH=340
Length = 339
Score = 471 bits (1212), Expect = e-133, Method: Compositional matrix adjust.
Identities = 216/329 (65%), Positives = 269/329 (81%)
Query: 24 KKPVKVLVTGAAGQIGYAIVAMIARGLMLGADQPVVLHLLDLPVAANALNGVRMELIDAA 83
K P++VL+TGAAG IGYAI MIARG+MLG DQP++LHLLD+ A+++L V+MEL D+A
Sbjct: 9 KDPIRVLITGAAGNIGYAIAPMIARGIMLGPDQPMILHLLDIEPASSSLEAVKMELQDSA 68
Query: 84 LPLLRGVVATSDEAEAFKGVNVAIVIGGWPRRDGMERKDLISKNVTIYKSQASALHQHAA 143
PLL+GV+AT++ EA K VN+ I+IGG+PR GMERKD++SKNV IYK+QASAL ++A+
Sbjct: 69 FPLLKGVIATTNVVEACKDVNIVIMIGGFPRIAGMERKDVMSKNVVIYKAQASALERYAS 128
Query: 144 PNCKVLVVANPANTNALVLKEFAPAIPAKNITCLTRLDHNRALGQVAEKLNVHVGDVKNA 203
+CKVLVVANPANTNAL+LKEFAP+IP +NITCLTRLDHNRAL Q+A+KL+V V VKN
Sbjct: 129 DDCKVLVVANPANTNALILKEFAPSIPEENITCLTRLDHNRALAQLADKLSVPVSSVKNV 188
Query: 204 IIWGNHSSTQFPDASHATVSTDRGERPVRELIADEIWLREEFVTDVQQRGAAVIKARKQX 263
I+WGNHSSTQ+PD +HATVST G+RP++EL+ D WL+ EF+ +VQQRGAAV++ARKQ
Sbjct: 189 IVWGNHSSTQYPDTNHATVSTKTGDRPLKELVTDHNWLKNEFIVEVQQRGAAVLRARKQS 248
Query: 264 XXXXXXXXXCDHMRDWILGTPKGTWVSMGVYSDGSYGVPEGVFFSFPVTCEKGEWSVVQG 323
CDH+RDW LGTPKGTWVSMGV SDGSYG+P G+ +SFPV CEKG W +VQG
Sbjct: 249 SAFSAAGAACDHIRDWFLGTPKGTWVSMGVCSDGSYGIPPGLVYSFPVICEKGSWKIVQG 308
Query: 324 LEIDDFARSKMETSATELKEEKSIAYEFL 352
L ID+F+R KM+ SA EL EEK +AY L
Sbjct: 309 LSIDEFSREKMDDSARELAEEKDLAYSCL 337
>AT5G58330.1 | chr5:23580010-23582287 REVERSE LENGTH=444
Length = 443
Score = 256 bits (653), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 142/324 (43%), Positives = 190/324 (58%), Gaps = 6/324 (1%)
Query: 24 KKPVKVLVTGAAGQIGYAIVAMIARGLMLGADQPVVLHLLDLPVAANALNGVRMELIDAA 83
KK + + V+GAAG I ++ +A G + G DQP+ L LL + AL GV MEL D+
Sbjct: 97 KKLINIAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSIQALEGVAMELEDSL 156
Query: 84 LPLLRGVVATSDEAEAFKGVNVAIVIGGWPRRDGMERKDLISKNVTIYKSQASALHQHAA 143
PLLR V +D E F+ V AI+IG PR GMER DL+ N I+ Q AL++ A+
Sbjct: 157 FPLLREVDIGTDPNEVFQDVEWAILIGAKPRGPGMERADLLDINGQIFAEQGKALNKAAS 216
Query: 144 PNCKVLVVANPANTNALVLKEFAPAIPAKNITCLTRLDHNRALGQVAEKLNVHVGDVKNA 203
PN KVLVV NP NTNAL+ + AP IPAKN LTRLD NRA Q+A K V V N
Sbjct: 217 PNVKVLVVGNPCNTNALICLKNAPNIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNM 276
Query: 204 IIWGNHSSTQFPDASHATVSTDRGERPVRELIADEIWLREEFVTDVQQRGAAVIKARKQX 263
IWGNHS+TQ PD +A ++ PV+E+I D WL E F VQ+RG +I+ +
Sbjct: 277 TIWGNHSTTQVPDFLNARING----LPVKEVITDHKWLEEGFTESVQKRGGLLIQKWGRS 332
Query: 264 XXXXXXXXXCDHMRDWILGTPKGTWVSMGVYSDGS-YGVPEGVFFSFPVTCE-KGEWSVV 321
D ++ + TP+G W S GVY+DG+ YG+ EG+ FS P + G++ +V
Sbjct: 333 SAASTAVSIVDAIKSLVTPTPEGDWFSTGVYTDGNPYGIEEGLVFSMPCRSKGDGDYELV 392
Query: 322 QGLEIDDFARSKMETSATELKEEK 345
+ +EIDD+ R ++ S EL EK
Sbjct: 393 KDVEIDDYLRQRIAKSEAELLAEK 416
>AT3G47520.1 | chr3:17513657-17514868 FORWARD LENGTH=404
Length = 403
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/238 (30%), Positives = 111/238 (46%), Gaps = 27/238 (11%)
Query: 28 KVLVTGAAGQIGYAIVAMIARGLMLGADQPVVLHLLDLPVAANALNGVRMELIDAALP-L 86
KV V GAAG IG + +I ++ LHL D+ AN + GV +L P
Sbjct: 84 KVAVLGAAGGIGQPLSLLIKMSPLVST-----LHLYDI---AN-VKGVAADLSHCNTPSQ 134
Query: 87 LRGVVATSDEAEAFKGVNVAIVIGGWPRRDGMERKDLISKNVTIYKSQASALHQHAAPNC 146
+R S+ A+ K VNV ++ G PR+ GM R DL + N I K+ A+ ++ PN
Sbjct: 135 VRDFTGPSELADCLKDVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVAEN-CPNA 193
Query: 147 KVLVVANPANTN----ALVLKEFAPAIPAKNITCLTRLDHNRALGQVAEKLNVHVGDVKN 202
+ +++NP N+ A VLK+ P K + +T LD RA V++K N+ + DV
Sbjct: 194 FIHIISNPVNSTVPIAAEVLKKKGVYDP-KKLFGVTTLDVVRANTFVSQKKNLKLIDVDV 252
Query: 203 AIIWGNHSSTQFPDASHATVSTDRGERPVRELIADEIWLREEFVTDVQQRGAAVIKAR 260
+I G+ T P S +P +EI +E +Q G V+ A+
Sbjct: 253 PVIGGHAGITILPLLSKT--------KPSVNFTDEEI---QELTVRIQNAGTEVVDAK 299
>AT2G22780.1 | chr2:9689995-9691923 REVERSE LENGTH=355
Length = 354
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 114/239 (47%), Gaps = 29/239 (12%)
Query: 28 KVLVTGAAGQIGYAIVAMIARGLMLGADQPVVLHLLDLPVAANALNGVRMEL--IDAALP 85
KV + GAAG IG + ++ ++ VLHL D+ ANA GV ++ +D +
Sbjct: 44 KVAILGAAGGIGQPLAMLMKMNPLVS-----VLHLYDV---ANA-PGVTADISHMDTSA- 93
Query: 86 LLRGVVATSDEAEAFKGVNVAIVIGGWPRRDGMERKDLISKNVTIYKSQASALHQHAAPN 145
++RG + EA G+++ I+ G PR+ GM R DL + N I ++ + A+ + P
Sbjct: 94 VVRGFLGQPQLEEALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLSEAIAK-CCPK 152
Query: 146 CKVLVVANPANTNALVLKEF---APAIPAKNITCLTRLDHNRALGQVAEKLNVHVGDVKN 202
V +++NP N+ + E A K + +T LD RA VAE +++ +V+
Sbjct: 153 AIVNIISNPVNSTVPIAAEVFKKAGTFDPKKLMGVTMLDVVRANTFVAEVMSLDPREVEV 212
Query: 203 AIIWGNHSSTQFPDASHATVSTDRGERPVRELIADEIWLREEFVTD-VQQRGAAVIKAR 260
++ G+ T P S +P EI E++TD +Q G V++A+
Sbjct: 213 PVVGGHAGVTILPLLSQV--------KPPCSFTQKEI----EYLTDRIQNGGTEVVEAK 259
>AT5G09660.4 | chr5:2993691-2995551 REVERSE LENGTH=364
Length = 363
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 104/237 (43%), Gaps = 25/237 (10%)
Query: 28 KVLVTGAAGQIGYAIVAMIARGLMLGADQPVVLHLLDLPVAANALNGVRMELIDAALPLL 87
KV + GAAG IG ++ ++ ++ +LHL D+ A V A ++
Sbjct: 44 KVAILGAAGGIGQSLSLLMKMNPLVS-----LLHLYDVVNAPGVTADVSHMDTGA---VV 95
Query: 88 RGVVATSDEAEAFKGVNVAIVIGGWPRRDGMERKDLISKNVTIYKSQASALHQHAAPNCK 147
RG + +A G+++ I+ G PR+ GM R DL N I K+ + + PN
Sbjct: 96 RGFLGAKQLEDALTGMDLVIIPAGIPRKPGMTRDDLFKINAGIVKTLCEGVAK-CCPNAI 154
Query: 148 VLVVANPANTNALVLKEF---APAIPAKNITCLTRLDHNRALGQVAEKLNVHVGDVKNAI 204
V +++NP N+ + E A K + +T LD RA VAE L + +V +
Sbjct: 155 VNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTTLDVARANTFVAEVLGLDPREVDVPV 214
Query: 205 IWGNHSSTQFPDASHATVSTDRGERPVRELIADEIWLREEFVTD-VQQRGAAVIKAR 260
+ G+ T P S +P EI E++T+ +Q G V++A+
Sbjct: 215 VGGHAGVTILPLLSQV--------KPPSSFTPQEI----EYLTNRIQNGGTEVVEAK 259
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.134 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,027,150
Number of extensions: 270230
Number of successful extensions: 663
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 659
Number of HSP's successfully gapped: 7
Length of query: 352
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 252
Effective length of database: 8,364,969
Effective search space: 2107972188
Effective search space used: 2107972188
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)