BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0531900 Os04g0531900|AK071069
(307 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0531900 Glucose/ribitol dehydrogenase family protein 628 e-180
Os04g0532100 Glucose/ribitol dehydrogenase family protein 412 e-115
Os04g0531750 Glucose/ribitol dehydrogenase family protein 327 8e-90
Os07g0685800 Glucose/ribitol dehydrogenase family protein 288 5e-78
Os02g0640600 263 1e-70
Os02g0607700 Glucose/ribitol dehydrogenase family protein 190 1e-48
Os04g0532400 Glucose/ribitol dehydrogenase family protein 182 4e-46
Os01g0929500 Similar to Carbonyl reductase-like protein 172 4e-43
Os04g0531700 Glucose/ribitol dehydrogenase family protein 113 1e-25
Os04g0496000 Glucose/ribitol dehydrogenase family protein 88 6e-18
>Os04g0531900 Glucose/ribitol dehydrogenase family protein
Length = 307
Score = 628 bits (1619), Expect = e-180, Method: Compositional matrix adjust.
Identities = 307/307 (100%), Positives = 307/307 (100%)
Query: 1 MERDITSLPTKRVAVVTGGNKGIGLEVCRQLAADGITVVLTARDETRGVEAAEKLSGMGL 60
MERDITSLPTKRVAVVTGGNKGIGLEVCRQLAADGITVVLTARDETRGVEAAEKLSGMGL
Sbjct: 1 MERDITSLPTKRVAVVTGGNKGIGLEVCRQLAADGITVVLTARDETRGVEAAEKLSGMGL 60
Query: 61 SSVVFHQLEVTDSSSVARLADFLKTRFGKLDILVNNAAVGGMEYVQGVDTNKEQFVSMDK 120
SSVVFHQLEVTDSSSVARLADFLKTRFGKLDILVNNAAVGGMEYVQGVDTNKEQFVSMDK
Sbjct: 61 SSVVFHQLEVTDSSSVARLADFLKTRFGKLDILVNNAAVGGMEYVQGVDTNKEQFVSMDK 120
Query: 121 KQRLAWLNKQGRETYDAAKNGVQTNYYGTKIVIQALLPLLLQSSGEGRIVNVSSDFGLLR 180
KQRLAWLNKQGRETYDAAKNGVQTNYYGTKIVIQALLPLLLQSSGEGRIVNVSSDFGLLR
Sbjct: 121 KQRLAWLNKQGRETYDAAKNGVQTNYYGTKIVIQALLPLLLQSSGEGRIVNVSSDFGLLR 180
Query: 181 VVNNEDLRKELDDVDNLTEERLDEVLDSFLKDFEAGALEAHGWPTAFAAYKTAKVAMNAY 240
VVNNEDLRKELDDVDNLTEERLDEVLDSFLKDFEAGALEAHGWPTAFAAYKTAKVAMNAY
Sbjct: 181 VVNNEDLRKELDDVDNLTEERLDEVLDSFLKDFEAGALEAHGWPTAFAAYKTAKVAMNAY 240
Query: 241 TRILARRHPELRVNCAHPGYVKTDMTIDSGFLTPEEGGRNVVTVALLPDGGPTGAFFAEG 300
TRILARRHPELRVNCAHPGYVKTDMTIDSGFLTPEEGGRNVVTVALLPDGGPTGAFFAEG
Sbjct: 241 TRILARRHPELRVNCAHPGYVKTDMTIDSGFLTPEEGGRNVVTVALLPDGGPTGAFFAEG 300
Query: 301 KEASFLG 307
KEASFLG
Sbjct: 301 KEASFLG 307
>Os04g0532100 Glucose/ribitol dehydrogenase family protein
Length = 309
Score = 412 bits (1059), Expect = e-115, Method: Compositional matrix adjust.
Identities = 205/310 (66%), Positives = 245/310 (79%), Gaps = 5/310 (1%)
Query: 1 MERDITSLPTKRVAVVTGGNKGIGLEVCRQLAADGITVVLTARDETRGVEAAEKLSGMGL 60
ME I S R+AVVTGGNKGIGLEVCRQLA +G TVVLTARDE +G A EKL G+GL
Sbjct: 1 MEETIFSSTHTRIAVVTGGNKGIGLEVCRQLAGNGATVVLTARDEAKGAAAVEKLHGLGL 60
Query: 61 SSVVFHQLEVTDSSSVARLADFLKTRFGKLDILVNNAAVGGMEYVQ----GVDTNKEQFV 116
SSV+FHQL+VTD+SS+ARLA+FL++RFG+LDILVNNAAVGG+ V G+ +E+F
Sbjct: 61 SSVIFHQLDVTDASSIARLAEFLESRFGRLDILVNNAAVGGIVPVDDPSFGLLPTEEKFS 120
Query: 117 SMDKKQRLAWLNKQGRETYDAAKNGVQTNYYGTKIVIQALLPLLLQSSGEGRIVNVSSDF 176
MD QR+ W+ K R+TYDAAK G++TNYYGTK V +ALLPLL QSS +GRIVNV+S F
Sbjct: 121 GMDGHQRIEWMWKNCRQTYDAAKAGLKTNYYGTKNVTEALLPLL-QSSSDGRIVNVASSF 179
Query: 177 GLLRVVNNEDLRKELDDVDNLTEERLDEVLDSFLKDFEAGALEAHGWPTAFAAYKTAKVA 236
GLLR NE+L++EL+D D+L+EERLDE+L F++DFEAGA+ GWPT F+AYK AK A
Sbjct: 180 GLLRFFTNEELKRELNDADSLSEERLDELLGMFVRDFEAGAVAERGWPTEFSAYKVAKAA 239
Query: 237 MNAYTRILARRHPELRVNCAHPGYVKTDMTIDSGFLTPEEGGRNVVTVALLPDGGPTGAF 296
M+AY RILAR+ P LRVNC PGYVKTD+T +SG LTPEEG VV VALLP GGPTGA
Sbjct: 240 MSAYARILARKRPALRVNCVDPGYVKTDLTRNSGLLTPEEGASRVVAVALLPAGGPTGAL 299
Query: 297 FAEGKEASFL 306
F GKEASF+
Sbjct: 300 FDGGKEASFV 309
>Os04g0531750 Glucose/ribitol dehydrogenase family protein
Length = 185
Score = 327 bits (837), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 161/181 (88%), Positives = 169/181 (93%)
Query: 1 MERDITSLPTKRVAVVTGGNKGIGLEVCRQLAADGITVVLTARDETRGVEAAEKLSGMGL 60
ME DI+SLPTKRVAVVTGGNKGIGLEVCRQLAADGITVVLTARDETRGVEAAEKL GMGL
Sbjct: 1 MEGDISSLPTKRVAVVTGGNKGIGLEVCRQLAADGITVVLTARDETRGVEAAEKLRGMGL 60
Query: 61 SSVVFHQLEVTDSSSVARLADFLKTRFGKLDILVNNAAVGGMEYVQGVDTNKEQFVSMDK 120
S V+FH LEVTDSSSV+RLADFL TRFGKL+ILVNNAAV GME+ Q VDTN+EQFV MDK
Sbjct: 61 SCVIFHHLEVTDSSSVSRLADFLTTRFGKLEILVNNAAVSGMEHAQRVDTNEEQFVGMDK 120
Query: 121 KQRLAWLNKQGRETYDAAKNGVQTNYYGTKIVIQALLPLLLQSSGEGRIVNVSSDFGLLR 180
+QRL WLNKQGRETYDAAKNGVQTNYYGTK+VIQ LLPLLLQSSGEGRIVNVSSD GLLR
Sbjct: 121 QQRLEWLNKQGRETYDAAKNGVQTNYYGTKLVIQTLLPLLLQSSGEGRIVNVSSDAGLLR 180
Query: 181 V 181
V
Sbjct: 181 V 181
>Os07g0685800 Glucose/ribitol dehydrogenase family protein
Length = 373
Score = 288 bits (736), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 147/306 (48%), Positives = 200/306 (65%), Gaps = 17/306 (5%)
Query: 1 MERDITSLPTKRVAVVTGGNKGIGLEVCRQLAADGITVVLTARDETRGVEAAEKLSG-MG 59
+ D ++P +R+AVVTGGN+GIGLEVCRQLA G+TV+LTARDE RG +A E L
Sbjct: 67 VNHDHETIP-ERLAVVTGGNRGIGLEVCRQLALQGVTVILTARDEKRGKDAVESLCHESN 125
Query: 60 LSSVVFHQLEVTDSSSVARLADFLKTRFGKLDILVNNAAVGGMEYVQGVDTNKEQFVSMD 119
LS+++FHQL++ D +S A LA ++ +RFGKLDILVNNA VGG+ VD + + +++D
Sbjct: 126 LSNIIFHQLDILDGNSRASLARYINSRFGKLDILVNNAGVGGV----AVDQDGLRALNID 181
Query: 120 KKQRLAWLNKQGR--------ETYDAAKNGVQTNYYGTKIVIQALLPLLLQSSGEGRIVN 171
+ WL+ + +TYD A + TNYYG K + +ALLPLL QS RIVN
Sbjct: 182 PR---VWLSGKAVNLIQSVIVQTYDEAVKCLNTNYYGLKWITEALLPLLKQSPSGARIVN 238
Query: 172 VSSDFGLLRVVNNEDLRKELDDVDNLTEERLDEVLDSFLKDFEAGALEAHGWPTAFAAYK 231
+S L+ + NE LR EL ++D E R++ +L+ FL D + LE GWPT AY
Sbjct: 239 TTSLRSELKRIPNEKLRDELRNIDIWDEARIEAMLNEFLLDLKNERLEEAGWPTMLPAYS 298
Query: 232 TAKVAMNAYTRILARRHPELRVNCAHPGYVKTDMTIDSGFLTPEEGGRNVVTVALLPDGG 291
+K +N YTRILA+RHPE+R+NC HPG+V T++ ++G + PEEG R V ALLP G
Sbjct: 299 MSKTVVNLYTRILAKRHPEMRINCVHPGFVNTEINWNTGIIPPEEGARGAVKAALLPQDG 358
Query: 292 PTGAFF 297
PTG +F
Sbjct: 359 PTGCYF 364
>Os02g0640600
Length = 403
Score = 263 bits (672), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 132/275 (48%), Positives = 188/275 (68%), Gaps = 14/275 (5%)
Query: 12 RVAVVTGGNKGIGLEVCRQLAADGITVVLTARDETRGVEAAEKLSGMGLSSVVFHQLEVT 71
RVAVVTGGN+G+GLE+CRQLA++GI VVLTARDE +G +A + L GLS V+FHQL+VT
Sbjct: 27 RVAVVTGGNRGVGLEICRQLASNGILVVLTARDEKKGSQAVKALEQSGLSGVIFHQLDVT 86
Query: 72 DSSSVARLADFLKTRFGKLDILVNNAAVGGMEYVQGVDTNK-EQFVSMDKKQR-----LA 125
D SS+ L +F++T+FGK +ILVNNAA+GG +D + + + D K +
Sbjct: 87 DRSSIMLLVEFIRTKFGKFNILVNNAAIGGTT----IDPERLRELLEQDPKASFQEDLMG 142
Query: 126 WLNK---QGRETYDAAKNGVQTNYYGTKIVIQALLPLLLQSSGEGRIVNVSSDFGLLRVV 182
+LN ++ Y+ AK ++ N+YGTK V L+PLLL S+ G+++N++S L+ +
Sbjct: 143 FLNSYMGSLQQNYEMAKECLEINFYGTKDVTDCLMPLLLLSN-SGKVINLTSKISQLQFI 201
Query: 183 NNEDLRKELDDVDNLTEERLDEVLDSFLKDFEAGALEAHGWPTAFAAYKTAKVAMNAYTR 242
+NE + K L D+DNL++E+L +V FLKDF+ G LEAHGW +AY +K +NAY+R
Sbjct: 202 SNEGVIKVLSDIDNLSDEKLKDVASIFLKDFKDGNLEAHGWQPVVSAYAVSKTLVNAYSR 261
Query: 243 ILARRHPELRVNCAHPGYVKTDMTIDSGFLTPEEG 277
+LA+RHP L V C +PG+VKTDM G ++ EEG
Sbjct: 262 LLAKRHPSLEVCCVNPGFVKTDMNYGIGLISVEEG 296
>Os02g0607700 Glucose/ribitol dehydrogenase family protein
Length = 298
Score = 190 bits (482), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 124/292 (42%), Positives = 166/292 (56%), Gaps = 33/292 (11%)
Query: 13 VAVVTGGNKGIGLEVCRQLAADGITVVLTARDETRGVEAAEKLSGMGLSSVVFHQLEVTD 72
VAVVTG N+GIG + +LA G+ VVLTARD RG AA L GL SV F +L+V+D
Sbjct: 22 VAVVTGANRGIGHALAARLAEQGLAVVLTARDGARGEAAAAALRARGLRSVRFRRLDVSD 81
Query: 73 SSSVARLADFLKTRFGKLDILVNNAAVGGMEYVQGVDTNKEQFVSMDKKQRLAWLNKQGR 132
+SVA A +L+ G LDILVNNAAV E +DTN
Sbjct: 82 PASVAAFASWLRDELGGLDILVNNAAVSFNE----IDTN--------------------- 116
Query: 133 ETYDAAKNGVQTNYYGTKIVIQALLPLLLQSSGEGRIVNVSSDFGLLRVVNNEDLRKELD 192
+ + A+ ++TN+YG K++I+ALLPL +S+ RI+N+SS GLL V + LR L
Sbjct: 117 -SVEHAETVLRTNFYGAKMLIEALLPLFRRSAANSRILNISSQLGLLNKVRDPSLRSMLL 175
Query: 193 DVDNLTEERLDEVLDSFLKDFEAGALEA--HGWPTAFAAYKTAKVAMNAYTRILARRHP- 249
D +LTE +++ + FL + + G A GWP + Y +K+A+NAY+R+LA R
Sbjct: 176 DEASLTEGKIERMASRFLAEVKDGTWSAPGRGWPAVWTDYAVSKLALNAYSRVLAARLAR 235
Query: 250 ---ELRVNCAHPGYVKTDMTIDSGFLTPEEGGRNVVTVALLPDGG-PTGAFF 297
+ VNC PG+ +TDMT G T EE GR +ALLP G PTG FF
Sbjct: 236 GGDRVAVNCFCPGFTRTDMTRGWGTRTAEEAGRVAAGLALLPPGDLPTGKFF 287
>Os04g0532400 Glucose/ribitol dehydrogenase family protein
Length = 167
Score = 182 bits (461), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 103/158 (65%), Positives = 108/158 (68%), Gaps = 41/158 (25%)
Query: 1 MERDITSLPTK--RVAVVTGGNKGIGLEVCRQLAADGITVVLTARDETRGVEAAEKLSGM 58
ME +SLP++ RVAVVTGGNK IGLEVCRQLAADGITVVLTARDETRGVEAAE+L GM
Sbjct: 1 MEGATSSLPSQSARVAVVTGGNKEIGLEVCRQLAADGITVVLTARDETRGVEAAERLRGM 60
Query: 59 GLSSVVFHQLEVTDSSSVARLADFLKTRFGKLDIL------------------------- 93
GLSSVVFHQLEVTDSSSVARLADFLKTRFGKLDIL
Sbjct: 61 GLSSVVFHQLEVTDSSSVARLADFLKTRFGKLDILASSPSPCSIDTGIQQLLLAYRYSAS 120
Query: 94 --------------VNNAAVGGMEYVQGVDTNKEQFVS 117
VNNAAVGGMEY QGVD N+EQ S
Sbjct: 121 DLTSDREEMCSVLQVNNAAVGGMEYAQGVDNNEEQVSS 158
>Os01g0929500 Similar to Carbonyl reductase-like protein
Length = 300
Score = 172 bits (435), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 116/308 (37%), Positives = 173/308 (56%), Gaps = 41/308 (13%)
Query: 13 VAVVTGGNKGIGLEVCRQLAADGITVVLTARDETRGVEAAEKL---SGMGLSSVVFHQLE 69
VAVVTG N+GIG E RQLA G+ VVLT+RD RG +A E++ +G SV + QL+
Sbjct: 19 VAVVTGANRGIGYEAARQLATHGLHVVLTSRDAARGRDATEQIRAAAGKPGVSVEWRQLD 78
Query: 70 VTDSSSVARLADFLKTRFGKLDILVNNAAVGGMEYVQGVDTNKEQFVSMDKKQRLAWLNK 129
VTD++SV A +++ G + +LVNNA G+ + +G D N +F
Sbjct: 79 VTDAASVEGFATWVERTHGGVHVLVNNA---GVNFNRGAD-NSVEF-------------- 120
Query: 130 QGRETYDAAKNGVQTNYYGTKIVIQALLPLLLQSSGEGRIVNVSSDFGLL----RVVNNE 185
A+ ++TNY+GTK +I+A++PL++ S GRIVNVSS G + + +
Sbjct: 121 --------AEQVIETNYFGTKRMIEAMMPLMITSPHGGRIVNVSSRLGRVNGRRNRIGDP 172
Query: 186 DLRKELDDVDNLTEERLDEVLDSFLKDFEAGALEA-HGWPTAFAAYKTAKVAMNAYT--- 241
LR+ L + D+L+EE ++E++ FL+ + + + WP + Y +K+A+NAYT
Sbjct: 173 SLRERLLNDDHLSEELINEMVMKFLEQTKQDNWSSGNEWPQMYTDYSISKLAVNAYTRLL 232
Query: 242 RILARRHPE---LRVNCAHPGYVKTDMTIDSGFLTPEEGGRNVVTVALLPDGGPT-GAFF 297
PE + +NC PG+VKT MT G ++ EEG V +AL+P T G FF
Sbjct: 233 ARRLLDRPEGQKIYINCFCPGWVKTAMTGWEGNISAEEGADTGVWLALVPQEQATIGKFF 292
Query: 298 AEGKEASF 305
AE +E SF
Sbjct: 293 AERREISF 300
>Os04g0531700 Glucose/ribitol dehydrogenase family protein
Length = 109
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/89 (64%), Positives = 73/89 (82%), Gaps = 2/89 (2%)
Query: 8 LPTKRVAVVTGGNKGIGLEVCRQLAADGITVVLTARDETRGVEAAEKL--SGMGLSSVVF 65
L R+A+VTGGNKG+GLE CRQLA+ G+ VVLTAR+E RG+EA + + SG S VVF
Sbjct: 9 LSIIRIALVTGGNKGVGLETCRQLASRGLRVVLTARNEARGLEAVDGIRRSGAADSDVVF 68
Query: 66 HQLEVTDSSSVARLADFLKTRFGKLDILV 94
HQL+VTD++SVARLADF++ +FG+LDILV
Sbjct: 69 HQLDVTDAASVARLADFVRDQFGRLDILV 97
>Os04g0496000 Glucose/ribitol dehydrogenase family protein
Length = 142
Score = 88.2 bits (217), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 69/125 (55%), Gaps = 5/125 (4%)
Query: 178 LLRVVNNEDLRKELDDVDNLTEERLDEVLDSFLKDFEAGALEAHGWPTAFAAYKTAKVAM 237
+L+ V++ +L++ L D + LTE ++ + FL + G GWP + Y +K+A+
Sbjct: 7 VLQKVSDPELKRLLQDEERLTEAEVEGMASRFLAQVKDGTWRGQGWPKVWTDYSVSKLAL 66
Query: 238 NAYTRILARRHP----ELRVNCAHPGYVKTDMTIDSGFLTPEEGGRNVVTVALLPDGG-P 292
NAY R+LARR + VNC PG+ +TDMT G T EE +ALLP G P
Sbjct: 67 NAYARVLARRLQARGDRVSVNCFCPGFTRTDMTRGWGKRTAEEAAEIGARLALLPPGELP 126
Query: 293 TGAFF 297
TG FF
Sbjct: 127 TGTFF 131
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.134 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,022,011
Number of extensions: 405414
Number of successful extensions: 1238
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 1250
Number of HSP's successfully gapped: 10
Length of query: 307
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 206
Effective length of database: 11,762,187
Effective search space: 2423010522
Effective search space used: 2423010522
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)