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Os04g0532400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glucose/ribitol dehydrogenase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.3 (0.0375) R2 : 0.856
β1 : 1.31 (0.139) R2dD : 0.0299 R2D : 0.00114
β2 : 2.5 (0.134) R2dC : 0.206 R2C : 0.542
β3 : -3.76 (0.17) R2dE : 0.297 R2E : 0.602
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.492 (0.0807) R2dN8 : 0.0167 R2N8 : -0.000905
σ : 0.701
deviance : 226.32
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C
peak time of C : 6.6
E
wheather : temperature
threshold : 16.45
memory length : 261
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 14.9
open length of G : 9.75

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
219.51 0.696 13.3 1.64 2.67 -3.67 1.83 4.08 0.609 6.92 17.72 257 14.9 9.8
226.2 0.7 13.3 1.31 2.52 -3.77 0.561 -- 0.474 6.62 16.4 264 14.9 9.67
227.64 0.703 13.3 1.59 2.7 -3.63 -- 3.71 0.608 6.81 17.47 252 15 9.87
226.32 0.701 13.3 1.31 2.5 -3.76 -- -- 0.492 6.6 16.45 261 14.9 9.75
290.13 0.793 13.3 1.67 -- -5.55 -- 0.249 0.645 -- 13.59 375 12.6 10.1
354.97 0.883 13.3 0.895 4.68 -- 1.39 -- 0.295 7.71 -- -- -- --
360.48 0.889 13.3 0.931 4.68 -- -- -- 0.293 7.72 -- -- -- --
281.06 0.781 13.4 1.49 -- -5.64 -- -- 0.625 -- 11.07 344 12.9 9.93
270.57 0.766 13.3 -- 2.62 -3.5 -- -- 0.348 6.54 15.52 241 15.1 9.9
1539.55 1.83 13.4 0.991 -- -- -- -- 0.36 -- -- -- -- --
383.31 0.916 13.3 -- 4.68 -- -- -- 0.189 7.7 -- -- -- --
330.44 0.847 13.4 -- -- -5.47 -- -- 0.448 -- 10.44 357 12.8 9.88
1565.45 1.85 13.4 -- -- -- -- -- 0.251 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 225.08 temperature 15 270 > th dose dependent rect. 15 10
7 233.57 temperature 15 270 > th dose dependent rect. 15 19
10 235.17 temperature 30 270 < th dose dependent rect. 11 18
38 243.25 temperature 20 90 > th dose independent rect. 16 19
40 243.74 temperature 20 270 > th dose independent rect. 14 20
44 244.16 temperature 20 10 > th dose independent rect. 16 20
73 249.63 temperature 20 270 > th dose independent rect. 14 11
85 250.97 temperature 25 270 > th dose independent rect. 15 9
107 252.91 temperature 20 270 > th dose dependent sin 14 NA
112 253.49 temperature 20 90 > th dose dependent sin 12 NA
124 254.67 temperature 20 10 > th dose independent rect. 16 12
127 254.81 temperature 15 10 > th dose dependent rect. 16 20
137 255.77 temperature 30 270 < th dose dependent sin 16 NA
201 258.48 temperature 30 90 < th dose dependent rect. 19 12
225 259.60 temperature 30 90 < th dose dependent sin 12 NA
230 259.83 temperature 20 10 > th dose dependent rect. 16 12
277 261.96 temperature 20 10 > th dose independent rect. 16 10
459 267.17 temperature 25 10 < th dose dependent sin 16 NA
460 267.19 temperature 10 720 > th dose dependent rect. 7 18
508 268.39 temperature 15 270 > th dose dependent rect. 4 21
520 268.85 temperature 25 270 < th dose dependent rect. 11 12
547 269.41 temperature 30 720 < th dose dependent rect. 9 13
592 270.39 temperature 10 720 > th dose dependent rect. 13 6
595 270.43 temperature 20 10 > th dose independent sin 13 NA
668 272.05 temperature 30 30 < th dose dependent rect. 19 23
689 272.50 temperature 25 270 < th dose independent rect. 11 16
709 272.80 temperature 20 720 > th dose dependent rect. 13 6
710 272.81 temperature 25 270 > th dose independent sin 17 NA
775 273.79 temperature 25 270 < th dose independent sin 17 NA
800 274.23 temperature 25 10 < th dose dependent rect. 10 18
812 274.35 temperature 10 720 > th dose dependent rect. 7 12
857 274.75 temperature 20 720 > th dose dependent sin 20 NA
887 275.02 temperature 20 90 > th dose independent rect. 5 23