BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0532400 Os04g0532400|J075164K19
(167 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G01800.1 | chr1:293396-294888 FORWARD LENGTH=296 105 1e-23
AT3G61220.2 | chr3:22663025-22664316 FORWARD LENGTH=304 104 2e-23
AT2G24190.2 | chr2:10283740-10284934 REVERSE LENGTH=302 103 4e-23
AT5G61830.1 | chr5:24837335-24838788 FORWARD LENGTH=317 87 6e-18
AT5G51030.1 | chr5:20747862-20749352 REVERSE LENGTH=315 85 1e-17
AT3G59710.1 | chr3:22055220-22057156 REVERSE LENGTH=303 73 8e-14
AT5G50700.1 | chr5:20623259-20624995 REVERSE LENGTH=350 47 5e-06
AT5G50600.1 | chr5:20589917-20591653 REVERSE LENGTH=350 47 5e-06
>AT1G01800.1 | chr1:293396-294888 FORWARD LENGTH=296
Length = 295
Score = 105 bits (262), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 50/88 (56%), Positives = 67/88 (76%), Gaps = 3/88 (3%)
Query: 14 RVAVVTGGNKEIGLEVCRQLAADGITVVLTARDETRGVEAAERLR---GMGLSSVVFHQL 70
RVAVVTG NK IG E+CRQLA +GITVVLTARDE +G+ A ++L+ G ++ FH L
Sbjct: 5 RVAVVTGSNKGIGFEICRQLANNGITVVLTARDENKGLAAVQKLKTENGFSDQAISFHPL 64
Query: 71 EVTDSSSVARLADFLKTRFGKLDILASS 98
+V++ ++A LA F+KTRFGKLDIL ++
Sbjct: 65 DVSNPDTIASLAAFVKTRFGKLDILVNN 92
>AT3G61220.2 | chr3:22663025-22664316 FORWARD LENGTH=304
Length = 303
Score = 104 bits (260), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/101 (52%), Positives = 72/101 (71%), Gaps = 3/101 (2%)
Query: 1 MEGATSSLPSQSARVAVVTGGNKEIGLEVCRQLAADGITVVLTARDETRGVEAAERLRG- 59
M T L + R AVVTG N+ IG E+CRQLA++GI VVLT+RDE RG+EA E L+
Sbjct: 1 MAEETPRLFNGFCRYAVVTGANRGIGFEICRQLASEGIRVVLTSRDENRGLEAVETLKKE 60
Query: 60 --MGLSSVVFHQLEVTDSSSVARLADFLKTRFGKLDILASS 98
+ S++FHQL+V D +S+ LA+F+KT+FGKLDIL ++
Sbjct: 61 LEISDQSLLFHQLDVADPASITSLAEFVKTQFGKLDILVNN 101
>AT2G24190.2 | chr2:10283740-10284934 REVERSE LENGTH=302
Length = 301
Score = 103 bits (257), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 53/98 (54%), Positives = 69/98 (70%), Gaps = 3/98 (3%)
Query: 4 ATSSLPSQSARVAVVTGGNKEIGLEVCRQLAADGITVVLTARDETRGVEAAERLRG---M 60
A S S R A+VTGGN+ IG E+CRQLA GI V+LT+RDE +G+EA E L+ +
Sbjct: 2 AEESPSSGLCRYAIVTGGNRGIGFEICRQLANKGIRVILTSRDEKQGLEAVETLKKELEI 61
Query: 61 GLSSVVFHQLEVTDSSSVARLADFLKTRFGKLDILASS 98
S+VFHQL+V+D SV LA+F+KT FGKLDIL ++
Sbjct: 62 SDQSIVFHQLDVSDPVSVTSLAEFVKTHFGKLDILINN 99
>AT5G61830.1 | chr5:24837335-24838788 FORWARD LENGTH=317
Length = 316
Score = 86.7 bits (213), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 48/86 (55%), Positives = 59/86 (68%), Gaps = 3/86 (3%)
Query: 15 VAVVTGGNKEIGLEVCRQLAADGITVVLTARDETRGVEAAERLRGM--GLSSVVFHQLEV 72
VAVVTG N+ IG E+ RQLA G+TVVLTAR+ G+EA + LR GL V FHQL+V
Sbjct: 38 VAVVTGSNRGIGFEIARQLAVHGLTVVLTARNVNAGLEAVKSLRHQEEGL-KVYFHQLDV 96
Query: 73 TDSSSVARLADFLKTRFGKLDILASS 98
TDSSS+ +LK FG LDIL ++
Sbjct: 97 TDSSSIREFGCWLKQTFGGLDILVNN 122
>AT5G51030.1 | chr5:20747862-20749352 REVERSE LENGTH=315
Length = 314
Score = 85.1 bits (209), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 63/87 (72%), Gaps = 1/87 (1%)
Query: 12 SARVAVVTGGNKEIGLEVCRQLAADGITVVLTARDETRGVEAAERLRGMGLSSVVFHQLE 71
S VAVVTG N+ IG E+ RQLA G+TV+LT+RDE GVEAA+ L+ G +V FH+L+
Sbjct: 36 SETVAVVTGANRGIGFEMVRQLAGHGLTVILTSRDENVGVEAAKILQEGGF-NVDFHRLD 94
Query: 72 VTDSSSVARLADFLKTRFGKLDILASS 98
+ DSSS+ +++K ++G +D+L ++
Sbjct: 95 ILDSSSIQEFCEWIKEKYGFIDVLINN 121
>AT3G59710.1 | chr3:22055220-22057156 REVERSE LENGTH=303
Length = 302
Score = 72.8 bits (177), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 53/83 (63%)
Query: 16 AVVTGGNKEIGLEVCRQLAADGITVVLTARDETRGVEAAERLRGMGLSSVVFHQLEVTDS 75
AVVTG NK IG V ++L G+TVVLTAR+ G +AAE LR +G +V F L+++D
Sbjct: 31 AVVTGANKGIGFAVVKRLLELGLTVVLTARNAENGSQAAESLRRIGFGNVHFCCLDISDP 90
Query: 76 SSVARLADFLKTRFGKLDILASS 98
SS+A A + G LDIL ++
Sbjct: 91 SSIAAFASWFGRNLGILDILVNN 113
>AT5G50700.1 | chr5:20623259-20624995 REVERSE LENGTH=350
Length = 349
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%)
Query: 14 RVAVVTGGNKEIGLEVCRQLAADGITVVLTARDETRGVEAAERLRGMGLSSVVFHQLEVT 73
+V ++TG + IG ++ + A G + LTAR + R E AE R +G +VV +V+
Sbjct: 48 KVVLITGASSGIGEQLAYEYACRGACLALTARRKNRLEEVAEIARELGSPNVVTVHADVS 107
Query: 74 DSSSVARLADFLKTRFGKLDILASS 98
R+ D T FG+LD L ++
Sbjct: 108 KPDDCRRIVDDTITHFGRLDHLVNN 132
>AT5G50600.1 | chr5:20589917-20591653 REVERSE LENGTH=350
Length = 349
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%)
Query: 14 RVAVVTGGNKEIGLEVCRQLAADGITVVLTARDETRGVEAAERLRGMGLSSVVFHQLEVT 73
+V ++TG + IG ++ + A G + LTAR + R E AE R +G +VV +V+
Sbjct: 48 KVVLITGASSGIGEQLAYEYACRGACLALTARRKNRLEEVAEIARELGSPNVVTVHADVS 107
Query: 74 DSSSVARLADFLKTRFGKLDILASS 98
R+ D T FG+LD L ++
Sbjct: 108 KPDDCRRIVDDTITHFGRLDHLVNN 132
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.130 0.349
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,117,300
Number of extensions: 109616
Number of successful extensions: 374
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 381
Number of HSP's successfully gapped: 14
Length of query: 167
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 76
Effective length of database: 8,611,713
Effective search space: 654490188
Effective search space used: 654490188
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 108 (46.2 bits)