Os04g0531900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Glucose/ribitol dehydrogenase family protein.
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Os04g0531900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Glucose/ribitol dehydrogenase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 220.07 | 0.697 | 5.88 | 1.82 | 1.98 | -1.21 | -0.915 | 3.86 | -0.574 | 14.8 | 20.8 | 988 | 0.926 | -- |
| 245.85 | 0.73 | 5.76 | 2.62 | 1.92 | -1.66 | -0.14 | -- | -0.298 | 14.8 | 19.41 | 957 | 0.444 | -- |
| 222.38 | 0.695 | 5.89 | 1.83 | 1.98 | -1.19 | -- | 3.71 | -0.586 | 14.8 | 20.74 | 1012 | 0.912 | -- |
| 244.83 | 0.729 | 5.78 | 2.59 | 1.91 | -1.69 | -- | -- | -0.317 | 14.7 | 19.57 | 943 | 0.061 | -- |
| 411.68 | 0.945 | 5.9 | 1.57 | -- | -0.861 | -- | 3.67 | -0.657 | -- | 21.37 | 1758 | 1.12 | -- |
| 291.65 | 0.801 | 5.71 | 3.08 | 1.71 | -- | 0.973 | -- | -0.0729 | 15.1 | -- | -- | -- | -- |
| 294.73 | 0.804 | 5.71 | 3.1 | 1.71 | -- | -- | -- | -0.0669 | 15.1 | -- | -- | -- | -- |
| 431.65 | 0.968 | 5.77 | 2.56 | -- | -1.21 | -- | -- | -0.372 | -- | 19.1 | 1755 | 1.58 | -- |
| 375.67 | 0.903 | 5.89 | -- | 1.92 | -2.65 | -- | -- | -0.95 | 14.9 | 19.27 | 2469 | 2.94 | -- |
| 461.68 | 1 | 5.71 | 3.03 | -- | -- | -- | -- | -0.112 | -- | -- | -- | -- | -- |
| 548.42 | 1.1 | 5.79 | -- | 1.65 | -- | -- | -- | -0.412 | 15.1 | -- | -- | -- | -- |
| 450.43 | 0.988 | 5.9 | -- | -- | -2.72 | -- | -- | -0.932 | -- | 15.39 | 47520 | 2.73e-05 | -- |
| 703.79 | 1.24 | 5.79 | -- | -- | -- | -- | -- | -0.448 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 217.29 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 16 |
| 6 | 218.94 | temperature | 20 | 270 | > th | dose dependent | rect. | 8 | 7 |
| 9 | 220.92 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 20 |
| 10 | 221.17 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 6 |
| 29 | 224.17 | temperature | 20 | 270 | > th | dose dependent | sin | 1 | NA |
| 40 | 224.86 | temperature | 30 | 270 | < th | dose dependent | sin | 1 | NA |
| 63 | 226.66 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 14 |
| 71 | 227.07 | temperature | 25 | 270 | > th | dose dependent | rect. | 3 | 11 |
| 89 | 227.41 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 14 |
| 92 | 227.48 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 5 |
| 140 | 228.94 | temperature | 20 | 720 | > th | dose dependent | sin | 5 | NA |
| 144 | 228.98 | temperature | 15 | 720 | > th | dose dependent | rect. | 2 | 12 |
| 159 | 229.38 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 15 |
| 167 | 229.55 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 10 |
| 176 | 229.66 | temperature | 20 | 720 | < th | dose independent | sin | 5 | NA |
| 254 | 230.74 | temperature | 25 | 270 | > th | dose independent | sin | 2 | NA |
| 276 | 230.99 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 14 |
| 302 | 231.32 | temperature | 20 | 720 | > th | dose independent | sin | 4 | NA |
| 338 | 231.78 | temperature | 20 | 90 | > th | dose dependent | sin | 22 | NA |
| 450 | 233.06 | temperature | 10 | 90 | > th | dose dependent | sin | 22 | NA |
| 490 | 233.45 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 637 | 234.94 | temperature | 25 | 270 | < th | dose independent | sin | 1 | NA |
| 674 | 235.37 | temperature | 10 | 10 | > th | dose dependent | sin | 21 | NA |
| 708 | 235.62 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 2 |
| 718 | 235.70 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 807 | 236.49 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 21 |
| 871 | 236.96 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 18 |
| 991 | 237.93 | temperature | 25 | 90 | > th | dose dependent | rect. | 8 | 23 |
| 993 | 237.94 | temperature | 25 | 90 | > th | dose dependent | rect. | 23 | 22 |