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Os04g0496000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glucose/ribitol dehydrogenase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11 (0.0182) R2 : 0.794
β1 : 1.87 (0.0665) R2dD : 0.368 R2D : 0.35
β2 : 1.43 (0.0457) R2dC : 0.443 R2C : 0.436
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.135 (0.0388) R2dN8 : 0.00729 R2N8 : -0.0158
σ : 0.341
deviance : 53.17
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_____
C
peak time of C : 20.5
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
41.12 0.301 11 1.94 1.23 -0.498 0.297 -0.578 0.13 19.3 17.09 10 -- --
42.77 0.305 11 1.93 1.25 -0.496 0.349 -- 0.132 19.3 16.37 10 -- --
41.21 0.299 11 1.94 1.22 -0.514 -- -0.626 0.128 19.2 16.36 9 -- --
43.5 0.307 11 1.91 1.23 -0.525 -- -- 0.128 19.2 16.35 10 -- --
114.74 0.499 10.9 1.9 -- -0.723 -- -0.532 0.118 -- 14.76 6 -- --
50.99 0.335 11 1.89 1.43 -- 0.827 -- 0.134 20.5 -- -- -- --
53.17 0.341 11 1.87 1.43 -- -- -- 0.135 20.5 -- -- -- --
111.64 0.492 10.9 1.77 -- -0.733 -- -- 0.0715 -- 4.797 2 -- --
136.41 0.547 11 -- 1.17 -0.507 -- -- -0.104 19.2 9.28 67 -- --
166.86 0.604 10.9 1.86 -- -- -- -- 0.121 -- -- -- -- --
144.92 0.563 11 -- 1.42 -- -- -- -0.0732 20.6 -- -- -- --
199.74 0.66 11 -- -- -0.717 -- -- -0.0659 -- 4.797 2 -- --
258.05 0.75 11 -- -- -- -- -- -0.0855 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 38.32 temperature 15 10 > th dose dependent rect. 8 16
53 40.09 radiation 10 270 > th dose independent rect. 15 21
64 40.24 radiation 10 270 > th dose independent rect. 16 19
65 40.26 radiation 20 10 < th dose dependent sin 2 NA
77 40.44 radiation 10 90 > th dose independent sin 3 NA
82 40.48 radiation 40 10 < th dose dependent rect. 11 23
84 40.53 radiation 10 90 > th dose independent rect. 17 21
92 40.59 radiation 20 90 < th dose dependent rect. 5 12
96 40.66 temperature 30 10 < th dose dependent rect. 4 14
99 40.67 radiation 20 90 < th dose dependent rect. 19 23
105 40.73 radiation 30 90 < th dose dependent sin 4 NA
116 40.82 temperature 30 270 < th dose independent rect. 11 20
121 40.86 radiation 10 90 > th dose independent rect. 7 7
123 40.86 temperature 30 10 < th dose dependent rect. 2 16
125 40.87 radiation 10 10 > th dose independent sin 2 NA
132 40.92 radiation 20 10 < th dose dependent rect. 6 11
133 40.93 radiation 20 10 < th dose dependent rect. 19 23
139 40.99 temperature 30 90 < th dose independent rect. 13 19
206 41.31 radiation 1 90 > th dose dependent sin 5 NA
230 41.37 radiation 10 10 > th dose independent rect. 17 21
231 41.37 temperature 30 10 < th dose dependent sin 0 NA
233 41.37 humidity 50 10 > th dose dependent rect. 13 20
260 41.50 temperature 30 10 < th dose dependent rect. 12 6
263 41.51 temperature 15 10 > th dose dependent sin 0 NA
284 41.55 radiation 10 90 < th dose independent sin 3 NA
313 41.62 radiation 40 90 < th dose dependent rect. 11 23
315 41.63 atmosphere 1000 10 > th dose independent rect. 11 23
319 41.63 radiation 1 90 > th dose dependent rect. 17 20
326 41.67 radiation 20 10 < th dose independent rect. 2 15
346 41.69 temperature 30 10 < th dose dependent rect. 12 22
349 41.71 radiation 10 90 < th dose independent rect. 5 12
351 41.72 radiation 10 90 < th dose independent rect. 19 23
365 41.76 radiation 20 10 < th dose independent sin 4 NA
370 41.76 radiation 30 90 < th dose dependent rect. 1 16
445 41.89 temperature 15 270 > th dose dependent rect. 6 5
455 41.90 temperature 20 90 > th dose dependent rect. 17 22
456 41.90 temperature 30 90 < th dose dependent rect. 1 22
469 41.93 radiation 10 90 < th dose independent rect. 1 16
485 41.96 temperature 20 10 > th dose dependent rect. 17 22
498 42.00 radiation 30 10 < th dose dependent rect. 2 15
500 42.00 temperature 30 10 < th dose dependent rect. 24 18
507 42.01 radiation 1 90 > th dose dependent rect. 7 6
510 42.01 atmosphere 995 10 > th dose dependent rect. 13 19
516 42.02 temperature 30 270 < th dose independent rect. 11 6
520 42.02 temperature 20 10 > th dose dependent rect. 3 23
545 42.08 radiation 10 270 < th dose dependent rect. 21 21
569 42.10 radiation 20 10 < th dose independent rect. 19 23
587 42.10 temperature 30 10 < th dose dependent rect. 24 23
597 42.12 temperature 20 90 > th dose dependent rect. 17 20
602 42.14 radiation 20 10 < th dose independent rect. 24 17
609 42.15 radiation 40 270 < th dose dependent rect. 11 19
610 42.15 radiation 20 270 < th dose dependent rect. 22 19
616 42.17 radiation 10 270 < th dose independent rect. 22 19
631 42.19 temperature 30 10 < th dose dependent rect. 24 20
636 42.20 temperature 30 270 < th dose independent rect. 13 1
654 42.22 radiation 30 10 < th dose dependent no NA NA
659 42.22 temperature 30 10 < th dose dependent rect. 2 21
664 42.23 temperature 30 90 < th dose dependent rect. 12 5
695 42.28 radiation 10 90 > th dose independent rect. 9 2
724 42.33 radiation 10 270 > th dose independent sin 10 NA
842 42.41 radiation 20 10 < th dose dependent rect. 9 23
850 42.42 temperature 20 10 > th dose dependent rect. 23 23
851 42.42 radiation 20 10 < th dose dependent rect. 15 23
966 42.55 radiation 20 270 < th dose dependent sin 9 NA
978 42.57 temperature 20 10 > th dose dependent rect. 7 7
984 42.58 temperature 25 90 > th dose dependent sin 8 NA
985 42.58 radiation 30 90 < th dose dependent rect. 11 6
993 42.59 radiation 20 270 < th dose independent rect. 10 20
996 42.59 temperature 20 10 > th dose dependent no NA NA
999 42.59 temperature 20 90 > th dose dependent rect. 9 2