BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0496000 Os04g0496000|AK105166
(142 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G59710.1 | chr3:22055220-22057156 REVERSE LENGTH=303 144 2e-35
AT5G51030.1 | chr5:20747862-20749352 REVERSE LENGTH=315 115 7e-27
AT5G61830.1 | chr5:24837335-24838788 FORWARD LENGTH=317 110 3e-25
AT2G24190.2 | chr2:10283740-10284934 REVERSE LENGTH=302 94 3e-20
AT3G61220.2 | chr3:22663025-22664316 FORWARD LENGTH=304 92 1e-19
AT1G01800.1 | chr1:293396-294888 FORWARD LENGTH=296 86 8e-18
>AT3G59710.1 | chr3:22055220-22057156 REVERSE LENGTH=303
Length = 302
Score = 144 bits (363), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 72/136 (52%), Positives = 95/136 (69%), Gaps = 4/136 (2%)
Query: 8 LQKVSDPELKRLLQDEERLTEAEVEGMASRFLAQVKDGTWRGQGWPKVWTDYSVSKLALN 67
L K+ P ++R+L+ E+ LT +++ ++FL VK GTW QGWP+ W DY++SKLALN
Sbjct: 170 LNKLRSPSIRRILESED-LTNEQIDATLTQFLQDVKSGTWEKQGWPENWPDYAISKLALN 228
Query: 68 AYARVLARRLQARGDRVSVNCFCPGFTRTDMTRGWGKRTAEEAAEIGARLALLPPGELPT 127
AY+RVLARR G ++SVNC CPGFTRT MT G G TA+EAA I A+L LLPP +L T
Sbjct: 229 AYSRVLARRYD--GKKLSVNCLCPGFTRTSMTGGQGTHTADEAAAIVAKLVLLPPEKLAT 286
Query: 128 GTFFKWC-TPQLYSKL 142
G F+ + +L SKL
Sbjct: 287 GKFYICVESKKLISKL 302
>AT5G51030.1 | chr5:20747862-20749352 REVERSE LENGTH=315
Length = 314
Score = 115 bits (288), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 59/124 (47%), Positives = 81/124 (65%), Gaps = 3/124 (2%)
Query: 10 KVSDPELKRLLQDEERLTEAEVEGMASRFLAQVKDGTWRGQGWPKVWTDYSVSKLALNAY 69
K+ + +++ L D + LTE V+ S FL QV++GTW GWP +TDYSVSK+A+NAY
Sbjct: 184 KLENEDVRAKLMDVDSLTEEIVDKTVSEFLKQVEEGTWESGGWPHSFTDYSVSKMAVNAY 243
Query: 70 ARVLARRLQAR--GDRVSVNCFCPGFTRTDMTRGWGKRTAEEAAEIGARLALLPPGELPT 127
RVLA+ L R G+++ NCFCPG+ +T MT G +AE+ A+ G LALLP + T
Sbjct: 244 TRVLAKELSERPEGEKIYANCFCPGWVKTAMTGYAGNVSAEDGADTGVWLALLPDQAI-T 302
Query: 128 GTFF 131
G FF
Sbjct: 303 GKFF 306
>AT5G61830.1 | chr5:24837335-24838788 FORWARD LENGTH=317
Length = 316
Score = 110 bits (275), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 82/125 (65%), Gaps = 2/125 (1%)
Query: 9 QKVSDPELKRLLQDEERLTEAEVEGMASRFLAQVKDGTWRGQGWPKVWTDYSVSKLALNA 68
++++ EL+ L + LTE ++ S+F+ QVKDGTW GWP+ +TDYS+SKLA+NA
Sbjct: 184 NRLANVELRDQLSSPDLLTEELIDRTVSKFINQVKDGTWESGGWPQTFTDYSMSKLAVNA 243
Query: 69 YARVLARRLQARG--DRVSVNCFCPGFTRTDMTRGWGKRTAEEAAEIGARLALLPPGELP 126
Y R++A+ L+ RG +++ VN FCPG+ +T MT G E+AA+ G L+L+ E
Sbjct: 244 YTRLMAKELERRGEEEKIYVNSFCPGWVKTAMTGYAGNMPPEDAADTGVWLSLVLSEEAV 303
Query: 127 TGTFF 131
TG FF
Sbjct: 304 TGKFF 308
>AT2G24190.2 | chr2:10283740-10284934 REVERSE LENGTH=302
Length = 301
Score = 93.6 bits (231), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/115 (41%), Positives = 66/115 (57%), Gaps = 4/115 (3%)
Query: 17 KRLLQDEERLTEAEVEGMASRFLAQVKDGTWRGQGWPKVWTDYSVSKLALNAYARVLARR 76
K +L D E LTE ++ + ++ L +K+ T + + W KV + Y VSK LNAY R+LA++
Sbjct: 183 KGILSDAENLTEVRIDQVINQLLNDLKEDTAKTKYWAKVMSAYVVSKAGLNAYTRILAKK 242
Query: 77 LQARGDRVSVNCFCPGFTRTDMTRGWGKRTAEEAAEIGARLALLPPGELPTGTFF 131
+ VN CPGF +TDM G + EE A RLALLP E P+G FF
Sbjct: 243 ----HPEIRVNSVCPGFVKTDMNFKTGILSVEEGASSPVRLALLPHQESPSGCFF 293
>AT3G61220.2 | chr3:22663025-22664316 FORWARD LENGTH=304
Length = 303
Score = 92.0 bits (227), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 68/124 (54%), Gaps = 4/124 (3%)
Query: 8 LQKVSDPELKRLLQDEERLTEAEVEGMASRFLAQVKDGTWRGQGWPKVWTDYSVSKLALN 67
L+ V + K +L D E LTE ++ + ++ L K+GT + + W K + Y VSK +LN
Sbjct: 176 LKNVLNEWAKGILSDAENLTEERIDQVINQLLNDFKEGTVKEKNWAKFMSAYVVSKASLN 235
Query: 68 AYARVLARRLQARGDRVSVNCFCPGFTRTDMTRGWGKRTAEEAAEIGARLALLPPGELPT 127
Y RVLA+ + VN CPGF +TDM G + EE A RLALLP E P+
Sbjct: 236 GYTRVLAK----KHPEFRVNAVCPGFVKTDMNFKTGVLSVEEGASSPVRLALLPHQETPS 291
Query: 128 GTFF 131
G FF
Sbjct: 292 GCFF 295
>AT1G01800.1 | chr1:293396-294888 FORWARD LENGTH=296
Length = 295
Score = 85.5 bits (210), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 72/124 (58%), Gaps = 5/124 (4%)
Query: 8 LQKVSDPELKRLLQDEERLTEAEVEGMASRFLAQVKDGTWRGQGWPKVWTDYSVSKLALN 67
L+ VS+ K +L D E LTE +++ + + +L K+G + +GWP V + Y +SK A+
Sbjct: 169 LENVSNEWAKGVLSDAENLTEEKIDEVINEYLKDYKEGALQVKGWPTVMSGYILSKAAVI 228
Query: 68 AYARVLARRLQARGDRVSVNCFCPGFTRTDMTRGWGKRTAEEAAEIGARLALLPPGELPT 127
A RVLA+R ++ +N CPGF T++ G + EE A +LAL+P G+ P+
Sbjct: 229 ALTRVLAKRHKS----FIINSVCPGFVNTEINFNTGILSVEEGAASPVKLALVPNGD-PS 283
Query: 128 GTFF 131
G FF
Sbjct: 284 GLFF 287
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.136 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,020,489
Number of extensions: 104858
Number of successful extensions: 324
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 319
Number of HSP's successfully gapped: 6
Length of query: 142
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 53
Effective length of database: 8,666,545
Effective search space: 459326885
Effective search space used: 459326885
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 106 (45.4 bits)