BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0412200 Os04g0412200|AK120232
(152 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0412200 Similar to Ferredoxin I 308 7e-85
Os05g0443500 Similar to Ferredoxin VI, chloroplast precurso... 158 2e-39
Os03g0835900 Similar to Ferredoxin III, chloroplast precurs... 156 6e-39
Os01g0860601 Similar to Ferredoxin, root R-B1 151 2e-37
Os08g0104600 Ferredoxin I, chloroplast precursor (Anti-dise... 146 5e-36
AK119605 146 5e-36
D83660 124 2e-29
AK110576 71 3e-13
Os03g0659200 Similar to Ferredoxin 69 2e-12
Os03g0685000 Similar to Ferredoxin 65 2e-11
>Os04g0412200 Similar to Ferredoxin I
Length = 152
Score = 308 bits (790), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 152/152 (100%), Positives = 152/152 (100%)
Query: 1 MATTTVTTPILCNLSAKPRDTLRLPTTRSPNDGTRRTTLHLSSSRARGDLIRAAAAVYTV 60
MATTTVTTPILCNLSAKPRDTLRLPTTRSPNDGTRRTTLHLSSSRARGDLIRAAAAVYTV
Sbjct: 1 MATTTVTTPILCNLSAKPRDTLRLPTTRSPNDGTRRTTLHLSSSRARGDLIRAAAAVYTV 60
Query: 61 KLIGPEGQESVIKVPEDTYILDAAEEAGVDLPYSCRAGACSTCAGKVVEGGVDQSDQSFL 120
KLIGPEGQESVIKVPEDTYILDAAEEAGVDLPYSCRAGACSTCAGKVVEGGVDQSDQSFL
Sbjct: 61 KLIGPEGQESVIKVPEDTYILDAAEEAGVDLPYSCRAGACSTCAGKVVEGGVDQSDQSFL 120
Query: 121 DDAQVGAGYVLTCVAYPTANSVIQTHKEADLY 152
DDAQVGAGYVLTCVAYPTANSVIQTHKEADLY
Sbjct: 121 DDAQVGAGYVLTCVAYPTANSVIQTHKEADLY 152
>Os05g0443500 Similar to Ferredoxin VI, chloroplast precursor (Fd VI)
Length = 148
Score = 158 bits (399), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 82/149 (55%), Positives = 104/149 (69%), Gaps = 4/149 (2%)
Query: 5 TVTTPILCNLSAKPRDTLRLPTTRSPND-GTRRTTLHLSSSRARGDLIRAAAAVYTVKLI 63
T T P LC KP + P T+SP+ G + TL++S R +A AV+ VKLI
Sbjct: 3 TATAPRLC--FPKPGAAIA-PATKSPSFIGYAKQTLNMSGLRISNKFRVSATAVHKVKLI 59
Query: 64 GPEGQESVIKVPEDTYILDAAEEAGVDLPYSCRAGACSTCAGKVVEGGVDQSDQSFLDDA 123
GP+G E + PEDTYIL+AAE AGV+LP+SCRAG+CSTCAGK+ G VDQS+ SFLD+
Sbjct: 60 GPDGVEHEFEAPEDTYILEAAETAGVELPFSCRAGSCSTCAGKMSSGEVDQSEGSFLDEN 119
Query: 124 QVGAGYVLTCVAYPTANSVIQTHKEADLY 152
Q+G GYVLTC++YP A+ VI THKE +LY
Sbjct: 120 QMGEGYVLTCISYPKADCVIHTHKEEELY 148
>Os03g0835900 Similar to Ferredoxin III, chloroplast precursor (Fd III)
Length = 153
Score = 156 bits (394), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 86/158 (54%), Positives = 104/158 (65%), Gaps = 11/158 (6%)
Query: 1 MATTTVTTPILCNLSAKPRDTLRLPTTRSP------NDGTRRTTLHLSSSRARGDLIRAA 54
MAT T+ T + +LS ++ +SP + G + +L SS + L +A
Sbjct: 1 MATCTLATSCV-SLSNARTQASKVAAVKSPASLSFFSQGMQFPSLKASSKK----LDVSA 55
Query: 55 AAVYTVKLIGPEGQESVIKVPEDTYILDAAEEAGVDLPYSCRAGACSTCAGKVVEGGVDQ 114
A Y VKLI PEGQE + P+DTYILDAAE AGV+LPYSCRAGACSTCAGK+ G VDQ
Sbjct: 56 MATYKVKLITPEGQEHEFEAPDDTYILDAAETAGVELPYSCRAGACSTCAGKIEAGSVDQ 115
Query: 115 SDQSFLDDAQVGAGYVLTCVAYPTANSVIQTHKEADLY 152
SD SFLDDAQ GYVLTCV+YP ++ VI THKE DLY
Sbjct: 116 SDGSFLDDAQQEEGYVLTCVSYPKSDCVIHTHKEGDLY 153
>Os01g0860601 Similar to Ferredoxin, root R-B1
Length = 165
Score = 151 bits (382), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 75/125 (60%), Positives = 95/125 (76%), Gaps = 2/125 (1%)
Query: 30 PNDGTRRTTLHLSSSRAR--GDLIRAAAAVYTVKLIGPEGQESVIKVPEDTYILDAAEEA 87
P +R L L+S AR G +AAAV+ VKLIGP+G ES ++VPEDTY+LDAAEEA
Sbjct: 41 PKLLSRPGNLQLTSGGARFSGRFRASAAAVHKVKLIGPDGAESELEVPEDTYVLDAAEEA 100
Query: 88 GVDLPYSCRAGACSTCAGKVVEGGVDQSDQSFLDDAQVGAGYVLTCVAYPTANSVIQTHK 147
G++LPYSCRAG+CSTCAGK+ G VDQSD SFL D Q+ GYVLTC++YP ++ VI THK
Sbjct: 101 GLELPYSCRAGSCSTCAGKLASGEVDQSDGSFLADEQIEQGYVLTCISYPKSDCVIYTHK 160
Query: 148 EADLY 152
E +++
Sbjct: 161 EEEVH 165
>Os08g0104600 Ferredoxin I, chloroplast precursor (Anti-disease protein 1)
Length = 139
Score = 146 bits (369), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 81/151 (53%), Positives = 104/151 (68%), Gaps = 13/151 (8%)
Query: 1 MATTTVTTPILCNLSAKPRDTLRLPTTRSPNDGTRRTTLHLSSSRARGDLIRAAAAVYTV 60
MA T +++ + +S LR+ T +P R ++ L +S GD +R A Y V
Sbjct: 1 MAATALSSQVRLPMS------LRVATAPAPA----RVSV-LPASNKLGDRLRMQA-TYNV 48
Query: 61 KLIGPEGQESVIKVPEDTYILDAAEEAGVDLPYSCRAGACSTCAGKVVEGGVDQSDQSFL 120
KLI P+G E ++VP+D YILD AEE G+DLPYSCRAG+CS+CAGKVV G +DQSDQSFL
Sbjct: 49 KLITPDG-EVELQVPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKVVSGEIDQSDQSFL 107
Query: 121 DDAQVGAGYVLTCVAYPTANSVIQTHKEADL 151
DD QV AG+VLTC AYP ++ VI+THKE DL
Sbjct: 108 DDDQVAAGWVLTCHAYPKSDVVIETHKEDDL 138
>AK119605
Length = 139
Score = 146 bits (369), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 81/151 (53%), Positives = 104/151 (68%), Gaps = 13/151 (8%)
Query: 1 MATTTVTTPILCNLSAKPRDTLRLPTTRSPNDGTRRTTLHLSSSRARGDLIRAAAAVYTV 60
MA T +++ + +S LR+ T +P R ++ L +S GD +R A Y V
Sbjct: 1 MAATALSSQVRLPMS------LRVATAPAPA----RVSV-LPASNKLGDRLRMQA-TYNV 48
Query: 61 KLIGPEGQESVIKVPEDTYILDAAEEAGVDLPYSCRAGACSTCAGKVVEGGVDQSDQSFL 120
KLI P+G E ++VP+D YILD AEE G+DLPYSCRAG+CS+CAGKVV G +DQSDQSFL
Sbjct: 49 KLITPDG-EVELQVPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKVVSGEIDQSDQSFL 107
Query: 121 DDAQVGAGYVLTCVAYPTANSVIQTHKEADL 151
DD QV AG+VLTC AYP ++ VI+THKE DL
Sbjct: 108 DDDQVAAGWVLTCHAYPKSDVVIETHKEDDL 138
>D83660
Length = 87
Score = 124 bits (312), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 55/81 (67%), Positives = 68/81 (83%)
Query: 72 IKVPEDTYILDAAEEAGVDLPYSCRAGACSTCAGKVVEGGVDQSDQSFLDDAQVGAGYVL 131
+ PEDTYIL+AAE AGV+LP+SCRAG+CSTCAGK+ G VDQS+ SFLD+ Q+G GYVL
Sbjct: 7 FEAPEDTYILEAAETAGVELPFSCRAGSCSTCAGKMSSGEVDQSEGSFLDENQMGEGYVL 66
Query: 132 TCVAYPTANSVIQTHKEADLY 152
TC++YP A+ VI THKE +LY
Sbjct: 67 TCISYPKADCVIHTHKEEELY 87
>AK110576
Length = 131
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 63 IGPEGQESVIKVPEDTYILDAAEEAGVDLPYSCRAGACSTCAGKVVEGGVDQSDQSFLDD 122
I +G+ V+ VPE IL+ A + G+DLP+ C+ G C TC K++ G VDQS S L D
Sbjct: 37 IDHQGKTYVLDVPEGRSILEVALDKGIDLPHDCKLGVCMTCPAKLMSGEVDQSG-SMLSD 95
Query: 123 AQVGAGYVLTCVAYPTANSVIQTHKEADLY 152
GY L C+A P ++ I T E +L
Sbjct: 96 DVAEKGYALLCMALPQSDVKIMTVSEDELL 125
>Os03g0659200 Similar to Ferredoxin
Length = 147
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 67 GQESVIKVPEDTYILDAAEEAGVDLPYSCRAGACSTCAGKVVEGGVDQSDQSFLDDAQVG 126
G+ V++V E IL A + G+D+P+ C+ G C TC ++V G VDQSD DD V
Sbjct: 54 GESRVVEVEEGETILSRALDEGIDVPHDCKLGVCMTCPARLVAGEVDQSDGMLSDDV-VA 112
Query: 127 AGYVLTCVAYPTANSVIQTHKEADL 151
GY L C +YP ++ I+ E +L
Sbjct: 113 QGYALLCASYPRSDCTIRVIPEDEL 137
>Os03g0685000 Similar to Ferredoxin
Length = 183
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 46/79 (58%)
Query: 74 VPEDTYILDAAEEAGVDLPYSCRAGACSTCAGKVVEGGVDQSDQSFLDDAQVGAGYVLTC 133
VP+D YIL AE + LP++CR G C++CA ++ G + Q + + GY L C
Sbjct: 78 VPQDQYILHTAEAQDITLPFACRHGCCTSCAVRIKSGQIRQPEALGISAELKDKGYALLC 137
Query: 134 VAYPTANSVIQTHKEADLY 152
V +PT++ ++T E ++Y
Sbjct: 138 VGFPTSDVEVETQDEDEVY 156
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.130 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,294,291
Number of extensions: 216228
Number of successful extensions: 635
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 631
Number of HSP's successfully gapped: 10
Length of query: 152
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 60
Effective length of database: 12,232,113
Effective search space: 733926780
Effective search space used: 733926780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 151 (62.8 bits)