BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0409900 Os04g0409900|AY575561
(124 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0409900 Similar to Neutral/alkaline invertase 4 (Fragm... 229 3e-61
Os02g0529400 Plant neutral invertase family protein 180 3e-46
Os01g0332100 Similar to Neutral invertase-like protein (Fra... 149 4e-37
Os03g0314800 Plant neutral invertase family protein 148 1e-36
Os11g0175400 Plant neutral invertase family protein 133 3e-32
Os02g0550600 Plant neutral invertase family protein 132 4e-32
Os04g0432400 Plant neutral invertase family protein 126 4e-30
Os02g0125600 Plant neutral invertase family protein 119 4e-28
>Os04g0409900 Similar to Neutral/alkaline invertase 4 (Fragment)
Length = 124
Score = 229 bits (585), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 112/124 (90%), Positives = 112/124 (90%)
Query: 1 WSYHNGGSWPTLLWQLTVACIKVDRSEIAAKAVEVAERRIANDKWPEYYDTKRARFIGKQ 60
WSYHNGGSWPTLLWQLTVACIKVDRSEIAAKAVEVAERRIANDKWPEYYDTKRARFIGKQ
Sbjct: 1 WSYHNGGSWPTLLWQLTVACIKVDRSEIAAKAVEVAERRIANDKWPEYYDTKRARFIGKQ 60
Query: 61 SRLFQTWTIAGFLVAKQLLENPDKSRILWNNEDEEILNAMNRMTDASNXXXXXXXXXXXX 120
SRLFQTWTIAGFLVAKQLLENPDKSRILWNNEDEEILNAMNRMTDASN
Sbjct: 61 SRLFQTWTIAGFLVAKQLLENPDKSRILWNNEDEEILNAMNRMTDASNLKRRRGRKGLKK 120
Query: 121 TYIV 124
TYIV
Sbjct: 121 TYIV 124
>Os02g0529400 Plant neutral invertase family protein
Length = 606
Score = 180 bits (456), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 84/101 (83%), Positives = 94/101 (93%)
Query: 1 WSYHNGGSWPTLLWQLTVACIKVDRSEIAAKAVEVAERRIANDKWPEYYDTKRARFIGKQ 60
WSYHNGGSWPTLLWQLTVA IK++R EIAAKAVEVAERRIA DKWPEYYDTKRARFIGKQ
Sbjct: 490 WSYHNGGSWPTLLWQLTVASIKMNRPEIAAKAVEVAERRIAIDKWPEYYDTKRARFIGKQ 549
Query: 61 SRLFQTWTIAGFLVAKQLLENPDKSRILWNNEDEEILNAMN 101
SRL+QTW+IAG+LVAKQLL+ PD +RIL N+ED EILNA++
Sbjct: 550 SRLYQTWSIAGYLVAKQLLDKPDAARILSNDEDSEILNALS 590
>Os01g0332100 Similar to Neutral invertase-like protein (Fragment)
Length = 628
Score = 149 bits (376), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 66/99 (66%), Positives = 80/99 (80%)
Query: 1 WSYHNGGSWPTLLWQLTVACIKVDRSEIAAKAVEVAERRIANDKWPEYYDTKRARFIGKQ 60
WSYHNGGSWPTLLWQ T+ACIK+ R E+A +A+ VAE ++A DKWPEYYDT+ RFIGKQ
Sbjct: 507 WSYHNGGSWPTLLWQFTLACIKMGRPELARRAIAVAEEKLAADKWPEYYDTRSGRFIGKQ 566
Query: 61 SRLFQTWTIAGFLVAKQLLENPDKSRILWNNEDEEILNA 99
SR +QTWTIAGFL +K LLENP+ + IL +ED E+L
Sbjct: 567 SRSYQTWTIAGFLTSKMLLENPELASILTCDEDLELLEG 605
>Os03g0314800 Plant neutral invertase family protein
Length = 628
Score = 148 bits (373), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 64/99 (64%), Positives = 81/99 (81%)
Query: 1 WSYHNGGSWPTLLWQLTVACIKVDRSEIAAKAVEVAERRIANDKWPEYYDTKRARFIGKQ 60
WSYHNGGSWPTLLWQ T+ACIK+ R ++A +A+EVAE+R++ DKWPEYYDT+ RFIGKQ
Sbjct: 506 WSYHNGGSWPTLLWQFTLACIKMGRRDLAQRAIEVAEKRLSEDKWPEYYDTRTGRFIGKQ 565
Query: 61 SRLFQTWTIAGFLVAKQLLENPDKSRILWNNEDEEILNA 99
SRL+QTWTIAG+L +K LL+ P+ + IL ED E+L
Sbjct: 566 SRLYQTWTIAGYLSSKMLLDCPELASILICEEDLELLEG 604
>Os11g0175400 Plant neutral invertase family protein
Length = 548
Score = 133 bits (335), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 58/102 (56%), Positives = 73/102 (71%)
Query: 1 WSYHNGGSWPTLLWQLTVACIKVDRSEIAAKAVEVAERRIANDKWPEYYDTKRARFIGKQ 60
WSYHNGGSWP LLW LT ACIK R ++A +A+E+AE R+ D WPEYYD K RFIGKQ
Sbjct: 441 WSYHNGGSWPVLLWLLTAACIKTGRPQMAKRAIELAESRLLKDGWPEYYDGKLGRFIGKQ 500
Query: 61 SRLFQTWTIAGFLVAKQLLENPDKSRILWNNEDEEILNAMNR 102
+R FQTW+IAG+LVA+ +LE+P ++ ED + M R
Sbjct: 501 ARKFQTWSIAGYLVARMMLEDPSTLMMISMEEDRPVKPTMRR 542
>Os02g0550600 Plant neutral invertase family protein
Length = 562
Score = 132 bits (333), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 57/102 (55%), Positives = 75/102 (73%)
Query: 1 WSYHNGGSWPTLLWQLTVACIKVDRSEIAAKAVEVAERRIANDKWPEYYDTKRARFIGKQ 60
WSYHNGGSWP LLW LT ACIK R +IA +A+++AERR+ D WPEYYD K R++GKQ
Sbjct: 455 WSYHNGGSWPVLLWLLTAACIKTGRPQIARRAIDLAERRLLKDGWPEYYDGKLGRYVGKQ 514
Query: 61 SRLFQTWTIAGFLVAKQLLENPDKSRILWNNEDEEILNAMNR 102
+R FQTW+IAG+LVAK +LE+P ++ ED+ + + R
Sbjct: 515 ARKFQTWSIAGYLVAKMMLEDPSHLGMISLEEDKAMKPVLKR 556
>Os04g0432400 Plant neutral invertase family protein
Length = 574
Score = 126 bits (316), Expect = 4e-30, Method: Composition-based stats.
Identities = 54/97 (55%), Positives = 72/97 (74%)
Query: 1 WSYHNGGSWPTLLWQLTVACIKVDRSEIAAKAVEVAERRIANDKWPEYYDTKRARFIGKQ 60
WSYHNGGSWP LLW LT ACIK R +IA +A+E+AE R+A D WPEYYD K R++GKQ
Sbjct: 466 WSYHNGGSWPVLLWLLTAACIKTGRLKIARRAIELAEARLARDGWPEYYDGKLGRYVGKQ 525
Query: 61 SRLFQTWTIAGFLVAKQLLENPDKSRILWNNEDEEIL 97
+R QTW++AG+LVAK ++E+P ++ ED ++
Sbjct: 526 ARKLQTWSVAGYLVAKMMVEDPSHLGMISLEEDRAMM 562
>Os02g0125600 Plant neutral invertase family protein
Length = 200
Score = 119 bits (299), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 53/99 (53%), Positives = 71/99 (71%)
Query: 1 WSYHNGGSWPTLLWQLTVACIKVDRSEIAAKAVEVAERRIANDKWPEYYDTKRARFIGKQ 60
WSYHNGGSWP LLW L +K+ R IA +AVEV E+R+ D++PEYYD K R++GKQ
Sbjct: 92 WSYHNGGSWPVLLWLLVAVSVKLGRPHIARRAVEVMEKRLVKDEFPEYYDGKAGRYVGKQ 151
Query: 61 SRLFQTWTIAGFLVAKQLLENPDKSRILWNNEDEEILNA 99
+R FQTW++AG+LVAK LL++P R + +D I +A
Sbjct: 152 ARKFQTWSVAGYLVAKMLLDDPSNLRAVSLADDCHIRSA 190
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.131 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,682,860
Number of extensions: 115235
Number of successful extensions: 327
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 327
Number of HSP's successfully gapped: 8
Length of query: 124
Length of database: 17,035,801
Length adjustment: 88
Effective length of query: 36
Effective length of database: 12,440,969
Effective search space: 447874884
Effective search space used: 447874884
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 149 (62.0 bits)